Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,952,925	A→G	G367G (GGT→GGC)	recB ←	RecB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,952,925	0	A	G	100.0%	710.3 / NA	222	G367G (GGT→GGC)	recB	RecB
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (125/97); total (125/97)

Only 100 of 243 total aligned reads displayed.

AAAAATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCACCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGT  >  NC_000913/2952835‑2953014

  aaaTTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTcgccgc                                                                                       <  2:3260464/93‑1 (MQ=255)

    aTTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCtt                                                                                     >  1:3525144/1‑93 (MQ=255)

     ttCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCttt                                                                                    >  2:1884612/1‑93 (MQ=255)

     ttCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCttt                                                                                    >  1:2803973/1‑93 (MQ=255)

      tCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTc                                                                                   <  2:5123420/93‑1 (MQ=255)

          tACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTa                                                                               <  2:1360504/93‑1 (MQ=255)

            ctgctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACg                                                                             <  1:5026709/93‑1 (MQ=255)

            ctgctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACg                                                                             >  2:1126350/1‑93 (MQ=255)

            ctgctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACg                                                                             >  1:2097658/1‑93 (MQ=255)

             tgctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGc                                                                            >  1:5977832/1‑93 (MQ=255)

             tgctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGc                                                                            >  1:396431/1‑93 (MQ=255)

             tgctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGc                                                                            >  1:2193609/1‑93 (MQ=255)

              gctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCa                                                                           >  1:5543257/1‑93 (MQ=255)

              gctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCa                                                                           <  2:397508/93‑1 (MQ=255)

               ctgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAg                                                                          >  2:4973337/1‑93 (MQ=255)

                tgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAgc                                                                         >  1:5728476/1‑93 (MQ=255)

                tgGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAgc                                                                         >  1:757723/1‑93 (MQ=255)

                 gggggTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAgcg                                                                        >  1:2522547/1‑93 (MQ=255)

                 gggggTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAgcg                                                                        >  2:4516112/1‑93 (MQ=255)

                      tCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGaa                                                                   >  1:214504/1‑93 (MQ=255)

                        ggTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATc                                                                 <  1:5491291/93‑1 (MQ=255)

                        ggTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATc                                                                 <  2:2933877/93‑1 (MQ=255)

                        ggTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATc                                                                 <  1:2731197/93‑1 (MQ=255)

                         gTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCg                                                                <  1:3994521/93‑1 (MQ=255)

                          tATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCTAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGa                                                               <  1:6237163/93‑1 (MQ=255)

                          tATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGa                                                               <  1:1819747/93‑1 (MQ=255)

                           aTCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAg                                                              >  1:2389754/1‑93 (MQ=255)

                            tCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCATCCCCTCGCCGCTTTCGCTACCCAGCGCGGAAGCGAGc                                                             <  2:2007035/93‑1 (MQ=255)

                            tCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGc                                                             >  2:5872258/1‑93 (MQ=255)

                               tGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGa                                                          >  2:2316010/1‑93 (MQ=255)

                                gAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGAc                                                         <  2:491608/93‑1 (MQ=255)

                                gAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGAc                                                         <  1:58108/93‑1 (MQ=255)

                                gAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCCCGGAATCGAGCCGAc                                                         >  2:2274197/1‑93 (MQ=255)

                                 aaaTTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACt                                                        <  1:1757270/93‑1 (MQ=255)

                                 aaaTTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACt                                                        <  2:2472778/93‑1 (MQ=255)

                                   aTTCATCGATCATTGCCACCGGGAATCGCGTACGGATCCCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTa                                                      >  1:1880844/1‑93 (MQ=255)

                                    ttCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTaa                                                     >  1:4814515/1‑93 (MQ=255)

                                     tCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAAc                                                    <  2:4228654/93‑1 (MQ=255)

                                       aTCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACCCCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACAt                                                  <  2:1282310/93‑1 (MQ=255)

                                       aTCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACAt                                                  >  2:3193531/1‑93 (MQ=255)

                                        tCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATg                                                 >  2:1623298/1‑93 (MQ=255)

                                        tCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATg                                                 >  1:1041602/1‑93 (MQ=255)

                                        tCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATg                                                 >  2:5940239/1‑93 (MQ=255)

                                        tCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATg                                                 <  1:1306457/93‑1 (MQ=255)

                                        tCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATg                                                 >  1:1654242/1‑93 (MQ=255)

                                          gATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGtc                                               >  1:2565857/1‑93 (MQ=255)

                                            tCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGtcat                                             <  2:3560892/93‑1 (MQ=255)

                                             cATTGCCCCCGGGAAGCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGtcatc                                            <  1:4928194/93‑1 (MQ=255)

                                             cATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGtcatc                                            <  2:1460623/93‑1 (MQ=255)

                                              aTTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGtcatca                                           <  2:2110131/93‑1 (MQ=255)

                                              aTTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGtcatca                                           >  1:4169839/1‑93 (MQ=255)

                                              aTTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGtcatca                                           <  2:69287/93‑1 (MQ=255)

                                              aTTGCCACCGCGAATCGCGTACGGATCGCCGCAGCCAACCCCTCGCCGCTTTCGCTCCGCAGCGCGGAATCGAGCCGACTTAACATGtcatca                                           <  2:1690745/93‑1 (MQ=255)

                                               ttGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCaa                                          >  1:4405374/1‑93 (MQ=255)

                                                tGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCaaa                                         <  2:1801744/93‑1 (MQ=255)

                                                 tcccccGGGAATCCCGTACTGATCGCCGCTGCCAACACCTCGCCTCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCaaaa                                        <  1:508774/89‑1 (MQ=255)

                                                 accgccGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCaaaa                                        <  2:5014673/89‑1 (MQ=255)

                                                  ccACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAc                                       <  1:3249904/93‑1 (MQ=255)

                                                  ccACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAc                                       <  1:3664099/93‑1 (MQ=255)

                                                   cACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAcc                                      <  1:865154/93‑1 (MQ=255)

                                                   cACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAcc                                      >  2:2075032/1‑93 (MQ=255)

                                                    aCCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAccc                                     >  1:6126213/1‑93 (MQ=255)

                                                     ccGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCa                                    >  1:2671269/1‑93 (MQ=255)

                                                     ccGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCa                                    >  2:2806418/1‑93 (MQ=255)

                                                     ccGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCa                                    >  1:6289211/1‑93 (MQ=255)

                                                      cGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCaa                                   <  2:616270/93‑1 (MQ=255)

                                                      cGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCaa                                   >  2:5730384/1‑93 (MQ=255)

                                                      cGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCaa                                   <  1:4711979/93‑1 (MQ=255)

                                                      cGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCaa                                   >  2:2672410/1‑93 (MQ=255)

                                                        ggAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAAtt                                 >  2:5541645/1‑93 (MQ=255)

                                                         gAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTc                                <  2:3788789/93‑1 (MQ=255)

                                                         gAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTc                                <  1:5289814/93‑1 (MQ=255)

                                                         gAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTc                                >  1:92217/1‑93 (MQ=255)

                                                            tCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGcc                             <  2:5799004/93‑1 (MQ=255)

                                                            tCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGcc                             <  2:1545142/93‑1 (MQ=255)

                                                            tCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGcc                             <  2:4732766/93‑1 (MQ=255)

                                                              gcgTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCAc                           >  2:1071680/1‑93 (MQ=255)

                                                              ccgTACGGATCGCCGCTGCAAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCAc                           <  1:4796220/92‑1 (MQ=255)

                                                                 tACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCACAACCCAATTCGCCAcggc                        >  1:3139775/1‑93 (MQ=255)

                                                                 tACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCAcggc                        >  2:30944/1‑93 (MQ=255)

                                                                 tACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCAcggc                        >  1:2039578/1‑93 (MQ=255)

                                                                  aCGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCAcggcg                       <  1:4640951/93‑1 (MQ=255)

                                                                    ggATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGGCGACTTAACATGTCATCAAAACCCAATTCGCCACggcggc                     >  1:1213106/1‑93 (MQ=255)

                                                                     gATCGCCGCTGCCACCCCCTCGCCGCTTTCGCTACGCAGCGCGGACTCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGgcggcg                    <  1:1487903/93‑1 (MQ=255)

                                                                     gATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGgcggcg                    >  2:4645796/1‑93 (MQ=255)

                                                                       tCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGtt                  <  1:5339950/93‑1 (MQ=255)

                                                                          ccgcTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCACAACCCAATTCGCCACGGCGGCGttttt               >  1:2963479/1‑93 (MQ=255)

                                                                           cgcTGCCAACTCCTCGCCGCTTTCGCTCCGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTc              <  2:3730096/93‑1 (MQ=255)

                                                                           cgcTGCCAACCCCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTc              <  2:1214892/93‑1 (MQ=255)

                                                                           cgcTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGGGGCGTTTTTc              >  2:543573/1‑93 (MQ=255)

                                                                           cgcTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTc              >  2:806367/1‑93 (MQ=255)

                                                                            gcTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCa             <  2:5307562/93‑1 (MQ=255)

                                                                             ctcccAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCAc            <  1:1081292/90‑1 (MQ=255)

                                                                              tGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCAcg           >  1:5660562/1‑93 (MQ=255)

                                                                                ccAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCAcgcg         >  2:3609219/1‑93 (MQ=255)

                                                                                 cAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACgcgc        >  1:3761444/1‑93 (MQ=255)

                                                                                    cacCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTAc     <  2:4122016/93‑1 (MQ=255)

                                                                                      ccTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTg   <  1:4056814/93‑1 (MQ=255)

                                                                                      ccTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTg   >  2:6258192/1‑93 (MQ=255)

                                                                                       cTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGt  <  1:1863248/93‑1 (MQ=255)

AAAAATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCACCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGT  >  NC_000913/2952835‑2953014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGAAAAATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCACCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGTTTCG  >  NC_000913/2952833‑2953018

CGAAAAATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGC                                                                                              >  SRR4302533.537884/1‑94 (MQ=60)

 GAAAAATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCC                                                                                             >  SRR4302533.2123146/1‑94 (MQ=60)

   AAAATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGC                                                                                           >  SRR4302533.1899144/1‑94 (MQ=60)

     AATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTT                                                                                         >  SRR4302533.5424860/1‑94 (MQ=60)

     AATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTT                                                                                         >  SRR4302533.3546868/1‑94 (MQ=60)

     AATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTT                                                                                         <  SRR4302533.6229481/94‑1 (MQ=60)

      ATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTT                                                                                        <  SRR4302533.5021795/94‑1 (MQ=60)

      ATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTT                                                                                        >  SRR4302533.2821228/1‑94 (MQ=60)

       TTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTC                                                                                       <  SRR4302533.4347389/94‑1 (MQ=60)

            TACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTAC                                                                                  >  SRR4302533.2513646/1‑94 (MQ=60)

             ACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACG                                                                                 >  SRR4302533.2110571/1‑94 (MQ=60)

              CTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGC                                                                                >  SRR4302533.398830/1‑94 (MQ=60)

              CTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGC                                                                                >  SRR4302533.6014039/1‑94 (MQ=60)

              CTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGC                                                                                <  SRR4302533.5057146/94‑1 (MQ=60)

              CTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGC                                                                                >  SRR4302533.2207128/1‑94 (MQ=60)

               TGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCA                                                                               >  SRR4302533.5576734/1‑94 (MQ=60)

               TGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCA                                                                               >  SRR4302533.4813126/1‑94 (MQ=60)

                 CTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGC                                                                             >  SRR4302533.5763069/1‑94 (MQ=60)

                 CTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGC                                                                             >  SRR4302533.762184/1‑94 (MQ=60)

                 CTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGC                                                                             >  SRR4302533.151163/1‑94 (MQ=60)

                  TGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCG                                                                            >  SRR4302533.2538088/1‑94 (MQ=60)

                      GGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGA                                                                        <  SRR4302533.5971574/94‑1 (MQ=60)

                       GTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAA                                                                       >  SRR4302533.215853/1‑94 (MQ=60)

                        TCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAAT                                                                      <  SRR4302533.4113340/94‑1 (MQ=60)

                         CGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAGCACCTCGCCGCTTTCGCTACGCAGCGCGGAATC                                                                     <  SRR4302533.620084/94‑1 (MQ=60)

                          GGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCG                                                                    <  SRR4302533.2747955/94‑1 (MQ=60)

                          GGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCG                                                                    >  SRR4302533.5543553/1‑94 (MQ=60)

                          GGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCG                                                                    <  SRR4302533.5524417/94‑1 (MQ=60)

                           GTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGA                                                                   >  SRR4302533.2742584/1‑94 (MQ=60)

                           GTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGA                                                                   <  SRR4302533.4018842/94‑1 (MQ=60)

                            TATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCTAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAG                                                                  <  SRR4302533.6274510/94‑1 (MQ=60)

                            TATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAG                                                                  <  SRR4302533.1385568/94‑1 (MQ=60)

                            TATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAG                                                                  <  SRR4302533.1830863/94‑1 (MQ=60)

                            TATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAG                                                                  >  SRR4302533.2404512/1‑94 (MQ=60)

                             ATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGC                                                                 >  SRR4302533.5871550/1‑94 (MQ=60)

                             ATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGC                                                                 >  SRR4302533.2137269/1‑94 (MQ=60)

                             ATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGC                                                                 >  SRR4302533.1704916/1‑94 (MQ=60)

                               CCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCG                                                               >  SRR4302533.4924165/1‑94 (MQ=60)

                               CCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCG                                                               >  SRR4302533.5082125/1‑94 (MQ=60)

                                CTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGA                                                              >  SRR4302533.3990351/1‑94 (MQ=60)

                                 TGAAATTCATCGATCATTGCCACCGGGAATCTCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGAC                                                             <  SRR4302533.632385/94‑1 (MQ=60)

                                  GAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACT                                                            <  SRR4302533.58493/94‑1 (MQ=60)

                                  GAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACT                                                            <  SRR4302533.5788829/94‑1 (MQ=60)

                                   AAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTT                                                           >  SRR4302533.2954336/1‑94 (MQ=60)

                                   AAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTT                                                           <  SRR4302533.1767982/94‑1 (MQ=60)

                                    AATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTA                                                          >  SRR4302533.2686320/1‑94 (MQ=60)

                                    AATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCCCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTA                                                          >  SRR4302533.1892300/1‑94 (MQ=60)

                                     ATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAA                                                         <  SRR4302533.4700660/94‑1 (MQ=60)

                                     ATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAA                                                         >  SRR4302533.4843695/1‑94 (MQ=60)

                                        CATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACAT                                                      <  SRR4302533.1777082/94‑1 (MQ=60)

                                         ATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATG                                                     <  SRR4302533.4842167/94‑1 (MQ=60)

                                         ATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATG                                                     >  SRR4302533.1047726/1‑94 (MQ=60)

                                         ATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATG                                                     >  SRR4302533.1664257/1‑94 (MQ=60)

                                          TCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGT                                                    <  SRR4302533.1314305/94‑1 (MQ=60)

                                           CGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTC                                                   >  SRR4302533.2581647/1‑94 (MQ=60)

                                            GATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCA                                                  >  SRR4302533.1880480/1‑94 (MQ=60)

                                             ATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCAT                                                 >  SRR4302533.2808309/1‑94 (MQ=60)

                                               CATTGCCCCCGGGAAGCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCA                                               <  SRR4302533.4958037/94‑1 (MQ=60)

                                               CATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCA                                               >  SRR4302533.6311758/1‑94 (MQ=60)

                                               CATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCA                                               >  SRR4302533.4195106/1‑94 (MQ=60)

                                                ATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAA                                              >  SRR4302533.6328564/1‑94 (MQ=60)

                                                ATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAA                                              >  SRR4302533.4431974/1‑94 (MQ=60)

                                                  TGCCCCCGGGAACCGCCTACGGAGCGCCGTTGCCAACTCCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAA                                            <  SRR4302533.4037238/94‑1 (MQ=60)

                                                   tcccCCGGGAATCCCGTACTGATCGCCGCTGCCAACACCTCGCCTCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAC                                           <  SRR4302533.511794/90‑1 (MQ=60)

                                                   GCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAC                                           >  SRR4302533.372648/1‑94 (MQ=60)

                                                   GCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAAC                                           >  SRR4302533.3101482/1‑94 (MQ=60)

                                                    CCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACC                                          <  SRR4302533.3686623/94‑1 (MQ=60)

                                                    CCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACC                                          >  SRR4302533.1968229/1‑94 (MQ=60)

                                                    CCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACC                                          <  SRR4302533.3269943/94‑1 (MQ=60)

                                                     CACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCC                                         <  SRR4302533.870219/94‑1 (MQ=60)

                                                     CACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCC                                         >  SRR4302533.6163137/1‑94 (MQ=60)

                                                     CACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCC                                         >  SRR4302533.2551785/1‑94 (MQ=60)

                                                      CCCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCA                                        <  SRR4302533.2781529/94‑1 (MQ=60)

                                                      ACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCA                                        >  SRR4302533.6326723/1‑94 (MQ=60)

                                                      ACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCA                                        >  SRR4302533.2687652/1‑94 (MQ=60)

                                                       CCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAA                                       <  SRR4302533.4800730/94‑1 (MQ=60)

                                                        CGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAAT                                      <  SRR4302533.4740537/94‑1 (MQ=60)

                                                          GGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTC                                    >  SRR4302533.92802/1‑94 (MQ=60)

                                                          GGAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTC                                    <  SRR4302533.1141450/94‑1 (MQ=60)

                                                           GAATCGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCG                                   <  SRR4302533.5321492/94‑1 (MQ=60)

                                                               CGCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCAC                               <  SRR4302533.806299/94‑1 (MQ=60)

                                                                GCGTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACG                              <  SRR4302533.4038663/94‑1 (MQ=60)

                                                                CCGTACGGATCGCCGCTGCAAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACG                              <  SRR4302533.4825273/94‑1 (MQ=60)

                                                                  GTACGGATCGCCGCTGCCAACACCTCGCCTCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGC                            <  SRR4302533.739480/94‑1 (MQ=60)

                                                                  GTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCACAACCCAATTCGCCACGGC                            >  SRR4302533.3159077/1‑94 (MQ=60)

                                                                  GTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGC                            >  SRR4302533.2052153/1‑94 (MQ=60)

                                                                  GTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGC                            >  SRR4302533.5986772/1‑94 (MQ=60)

                                                                  GTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGC                            >  SRR4302533.3820016/1‑94 (MQ=60)

                                                                  GTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGC                            >  SRR4302533.5323327/1‑94 (MQ=60)

                                                                  GTACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGC                            >  SRR4302533.5261341/1‑94 (MQ=60)

                                                                   TACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCG                           >  SRR4302533.2336181/1‑94 (MQ=60)

                                                                   TACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCG                           <  SRR4302533.4927005/94‑1 (MQ=60)

                                                                    ACGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGG                          <  SRR4302533.4669070/94‑1 (MQ=60)

                                                                     CGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGGCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGC                         >  SRR4302533.1220399/1‑94 (MQ=60)

                                                                     CGGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGC                         <  SRR4302533.3218281/94‑1 (MQ=60)

                                                                     CGGATCGCCGATGCCAACACCCCGCCGCTTTCGCAACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGC                         <  SRR4302533.6118195/94‑1 (MQ=60)

                                                                      GGATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCG                        >  SRR4302533.3086529/1‑94 (MQ=60)

                                                                       GATCGCCGCTGCCACCCCCTCGCCGCTTTCGCTACGCAGCGCGGACTCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGT                       <  SRR4302533.1496880/94‑1 (MQ=60)

                                                                       GATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGT                       >  SRR4302533.1242673/1‑94 (MQ=60)

                                                                        ATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTT                      >  SRR4302533.1775354/1‑94 (MQ=60)

                                                                        ATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTT                      <  SRR4302533.3957141/94‑1 (MQ=60)

                                                                        ATCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTT                      >  SRR4302533.5468031/1‑94 (MQ=60)

                                                                         TCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTT                     <  SRR4302533.1506155/94‑1 (MQ=60)

                                                                         TCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTT                     >  SRR4302533.4623307/1‑94 (MQ=60)

                                                                         TCGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTT                     <  SRR4302533.5371971/94‑1 (MQ=60)

                                                                          CGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTT                    >  SRR4302533.3568660/1‑94 (MQ=60)

                                                                          CGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTT                    >  SRR4302533.4442418/1‑94 (MQ=60)

                                                                          CGCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTT                    >  SRR4302533.1071189/1‑94 (MQ=60)

                                                                           GCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCACAACCCAATTCGCCACGGCGGCGTTTTT                   >  SRR4302533.2981597/1‑94 (MQ=60)

                                                                           GCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTT                   >  SRR4302533.2645561/1‑94 (MQ=60)

                                                                           GCCGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTT                   >  SRR4302533.237524/1‑94 (MQ=60)

                                                                             CGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCA                 >  SRR4302533.3612776/1‑94 (MQ=60)

                                                                             CGCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCA                 >  SRR4302533.3285743/1‑94 (MQ=60)

                                                                              GCTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCAC                <  SRR4302533.1865382/94‑1 (MQ=60)

                                                                               CTGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACG               >  SRR4302533.5694764/1‑94 (MQ=60)

                                                                               CTCCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACG               <  SRR4302533.1087673/94‑1 (MQ=60)

                                                                                TGCCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGC              <  SRR4302533.206483/94‑1 (MQ=60)

                                                                                  CCAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGC            >  SRR4302533.3784500/1‑94 (MQ=60)

                                                                                   CAACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCT           >  SRR4302533.2170550/1‑94 (MQ=60)

                                                                                     ACACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTAC         >  SRR4302533.5714510/1‑94 (MQ=60)

                                                                                      CACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACT        >  SRR4302533.5642947/1‑94 (MQ=60)

                                                                                      CACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACT        >  SRR4302533.1301979/1‑94 (MQ=60)

                                                                                      CACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACT        <  SRR4302533.5657635/94‑1 (MQ=60)

                                                                                      CACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACT        <  SRR4302533.926898/94‑1 (MQ=60)

                                                                                       ACCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTG       <  SRR4302533.5149781/94‑1 (MQ=60)

                                                                                        CCTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGT      <  SRR4302533.4081510/94‑1 (MQ=60)

                                                                                         CTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGTT     <  SRR4302533.1874615/94‑1 (MQ=60)

                                                                                         CTCGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGTT     >  SRR4302533.1053584/1‑94 (MQ=60)

                                                                                           CGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGTTTC   <  SRR4302533.3506683/94‑1 (MQ=60)

                                                                                           CGCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGTTTC   >  SRR4302533.4612078/1‑94 (MQ=60)

                                                                                            GCCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGCCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGTTTCG  >  SRR4302533.4455898/1‑94 (MQ=60)

CGAAAAATTCGGTACTGCTGGGGGTCGGTATCCTGAAATTCATCGATCATTGCCACCGGGAATCGCGTACGGATCGCCGCTGCCAACACCTCACCGCTTTCGCTACGCAGCGCGGAATCGAGCCGACTTAACATGTCATCAAAACCCAATTCGCCACGGCGGCGTTTTTCACGCGCTACTGTTTCG  >  NC_000913/2952833‑2953018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`