Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,964,245 T→C Y72H (TAC→CAC)  rho → transcription termination factor Rho

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,964,2450TC100.0% 659.5 / NA 205Y72H (TAC→CAC) rhotranscription termination factor Rho
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (108/97);  total (108/97)

Only 100 of 211 total aligned reads displayed.

CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT  >  NC_000913/3964155‑3964334
                                                                                          |                                                                                         
caCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAc                                                                                         <  1:4353221/93‑1 (MQ=255)
 aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAcc                                                                                        >  1:6217609/1‑93 (MQ=255)
 aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAcc                                                                                        <  2:1920277/93‑1 (MQ=255)
  cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt                                                                                       <  1:1354314/93‑1 (MQ=255)
  cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt                                                                                       <  1:1371270/93‑1 (MQ=255)
  cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt                                                                                       >  2:5464390/1‑93 (MQ=255)
  cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt                                                                                       <  1:1779787/93‑1 (MQ=255)
    cAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTcc                                                                                     >  1:53038/1‑92 (MQ=255)
    cAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCg                                                                                     >  1:1014299/1‑93 (MQ=255)
     aaaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGc                                                                                    >  2:4084210/1‑93 (MQ=255)
     aaaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGc                                                                                    >  2:2389861/1‑93 (MQ=255)
      aaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGcc                                                                                   >  2:3058323/1‑93 (MQ=255)
      aaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGcc                                                                                   >  1:2761279/1‑93 (MQ=255)
       agagTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCg                                                                                  >  1:2354629/1‑93 (MQ=255)
       agagTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCg                                                                                  <  1:659076/93‑1 (MQ=255)
         agTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGt                                                                                <  1:5549517/93‑1 (MQ=255)
           tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTcc                                                                              <  2:4095925/93‑1 (MQ=255)
            ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCt                                                                             <  2:2763839/93‑1 (MQ=255)
            ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCt                                                                             <  2:4853622/93‑1 (MQ=255)
             gCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtg                                                                            <  2:4990123/93‑1 (MQ=255)
              cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtga                                                                           >  2:3169254/1‑93 (MQ=255)
              cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtga                                                                           <  1:1185320/93‑1 (MQ=255)
               gAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgat                                                                          <  2:4388449/93‑1 (MQ=255)
               gAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgat                                                                          >  1:2667839/1‑93 (MQ=255)
                aaGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatg                                                                         <  1:942515/93‑1 (MQ=255)
                aaGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatg                                                                         >  1:4902203/1‑93 (MQ=255)
                aaGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatg                                                                         <  2:2957839/93‑1 (MQ=255)
                 aGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatga                                                                        >  1:2739211/1‑93 (MQ=255)
                 aGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatga                                                                        >  2:2472857/1‑93 (MQ=255)
                   atatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACa                                                                      >  1:4498119/1‑93 (MQ=255)
                    tatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAt                                                                     >  2:6177771/1‑93 (MQ=255)
                    tatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAt                                                                     >  1:4871034/1‑93 (MQ=255)
                     atCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATc                                                                    >  1:4427740/1‑93 (MQ=255)
                     atCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATc                                                                    >  2:4101668/1‑93 (MQ=255)
                     atCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATc                                                                    <  1:2523090/93‑1 (MQ=255)
                      tCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCt                                                                   <  1:2854864/93‑1 (MQ=255)
                       cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTa                                                                  >  2:3640053/1‑93 (MQ=255)
                           ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt                                                              >  1:4723186/1‑93 (MQ=255)
                           ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt                                                              <  2:4335744/93‑1 (MQ=255)
                           ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt                                                              <  2:1557492/93‑1 (MQ=255)
                           ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt                                                              >  1:1615090/1‑93 (MQ=255)
                            gTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGttt                                                             <  2:2711790/93‑1 (MQ=255)
                            gTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGttt                                                             >  2:4195175/1‑93 (MQ=255)
                               aTGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTccc                                                          >  2:5653628/1‑93 (MQ=255)
                                 ggCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCt                                                        >  1:758056/1‑93 (MQ=255)
                                  gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGATAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa                                                       >  2:2069196/1‑93 (MQ=255)
                                  gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa                                                       <  2:3252845/93‑1 (MQ=255)
                                  gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa                                                       >  1:3347499/1‑93 (MQ=255)
                                  gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa                                                       <  2:666495/93‑1 (MQ=255)
                                  gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa                                                       <  1:1527753/93‑1 (MQ=255)
                                     tACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGcc                                                    >  2:5970183/1‑93 (MQ=255)
                                      tcTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCa                                                   <  1:3304350/92‑1 (MQ=255)
                                       cTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaa                                                  <  2:5396024/93‑1 (MQ=255)
                                        tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaaa                                                 >  2:1270045/1‑93 (MQ=255)
                                        tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaaa                                                 >  2:5851898/1‑93 (MQ=255)
                                          gagaTATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATc                                               >  2:4506297/1‑93 (MQ=255)
                                            gaTATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccg                                             >  1:5793027/1‑93 (MQ=255)
                                              aatTGCAGGATGGATTGGGTTTCCCCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgcc                                           <  1:2904064/92‑1 (MQ=255)
                                                ttGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGt                                         >  2:3598562/1‑93 (MQ=255)
                                                  gCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGttt                                       <  2:6196595/93‑1 (MQ=255)
                                                   cAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTc                                      <  2:1414591/93‑1 (MQ=255)
                                                    aGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCa                                     >  1:5013352/1‑93 (MQ=255)
                                                     ggatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCaa                                    >  1:2019947/1‑93 (MQ=255)
                                                     ggatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCaa                                    >  2:1392433/1‑93 (MQ=255)
                                                      gatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAc                                   <  2:953833/93‑1 (MQ=255)
                                                       atggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAcc                                  <  1:3760460/93‑1 (MQ=255)
                                                        tggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGTTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCt                                 <  2:1812298/93‑1 (MQ=255)
                                                        tggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCt                                 >  1:4665999/1‑93 (MQ=255)
                                                         ggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTc                                >  1:899886/1‑93 (MQ=255)
                                                         ggatTTGGTTTCCTCCGTTCCGCAGACAGCTACCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCACCCTc                                <  2:1701495/93‑1 (MQ=255)
                                                          gatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCTCTAGCCAAATCCGCCGTTTCAACCTcc                               >  2:6268595/1‑93 (MQ=255)
                                                          gatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTcc                               >  2:1050680/1‑93 (MQ=255)
                                                           atTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCg                              >  2:3008721/1‑93 (MQ=255)
                                                           atTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCg                              >  1:5860651/1‑93 (MQ=255)
                                                                gTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTg                         <  2:1782298/93‑1 (MQ=255)
                                                                gTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTg                         <  1:4086954/93‑1 (MQ=255)
                                                                 tttCCTCCGTTCCTCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTgg                        <  1:1887876/93‑1 (MQ=255)
                                                                 tttCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTgg                        >  1:5350802/1‑93 (MQ=255)
                                                                 tttCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTgg                        <  1:296775/93‑1 (MQ=255)
                                                                   tcctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTg                      >  1:111387/1‑93 (MQ=255)
                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     >  2:5740471/1‑93 (MQ=255)
                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     >  2:5113560/1‑93 (MQ=255)
                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     >  1:3668946/1‑93 (MQ=255)
                                                                     ctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAt                    >  1:5688224/1‑93 (MQ=255)
                                                                     ctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAt                    >  2:3322092/1‑93 (MQ=255)
                                                                      tccGTTCCGCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATa                   <  1:516538/93‑1 (MQ=255)
                                                                      tccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATa                   >  2:464500/1‑93 (MQ=255)
                                                                          ttCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAt               <  1:559580/93‑1 (MQ=255)
                                                                          ttCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAt               <  1:1204195/93‑1 (MQ=255)
                                                                              gCAGACGGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTGCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATctct           <  2:3724198/93‑1 (MQ=255)
                                                                                aGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTgg         >  1:3102444/1‑93 (MQ=255)
                                                                                aGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTgg         >  2:3816232/1‑93 (MQ=255)
                                                                                 gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGt        >  1:3390412/1‑93 (MQ=255)
                                                                                 gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGt        >  2:5500418/1‑93 (MQ=255)
                                                                                 gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGt        >  1:1137945/1‑93 (MQ=255)
                                                                                  aCAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa       <  1:2401695/93‑1 (MQ=255)
                                                                                  aCAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa       <  1:1463736/93‑1 (MQ=255)
                                                                                   cAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTaa      <  1:3964192/93‑1 (MQ=255)
                                                                                   cAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTaa      <  2:2275782/93‑1 (MQ=255)
                                                                                     gCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGa    <  1:608840/93‑1 (MQ=255)
                                                                                          |                                                                                         
CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT  >  NC_000913/3964155‑3964334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC  >  NC_000913/3964152‑3964338
                                                                                             |                                                                                             
CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCC                                                                                               <  SRR4302533.243859/94‑1 (MQ=60)
 AGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCA                                                                                              >  SRR4302533.3988815/1‑94 (MQ=60)
   CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACC                                                                                            <  SRR4302533.2754271/94‑1 (MQ=60)
   CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACC                                                                                            >  SRR4302533.6254892/1‑94 (MQ=60)
   CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACC                                                                                            <  SRR4302533.4379493/94‑1 (MQ=60)
     CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          <  SRR4302533.1157401/94‑1 (MQ=60)
     CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          <  SRR4302533.1790622/94‑1 (MQ=60)
     CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          <  SRR4302533.1362455/94‑1 (MQ=60)
     CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          >  SRR4302533.818761/1‑94 (MQ=60)
     CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          <  SRR4302533.1379512/94‑1 (MQ=60)
      GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG                                                                                         <  SRR4302533.2789422/94‑1 (MQ=60)
      GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG                                                                                         >  SRR4302533.1020239/1‑94 (MQ=60)
      GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCC                                                                                         >  SRR4302533.53396/1‑94 (MQ=60)
        AAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCC                                                                                       >  SRR4302533.2778205/1‑94 (MQ=60)
         AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG                                                                                      >  SRR4302533.2369191/1‑94 (MQ=60)
         AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG                                                                                      <  SRR4302533.5817344/94‑1 (MQ=60)
          AGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGG                                                                                     <  SRR4302533.662959/94‑1 (MQ=60)
           GAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGC                                                                                    >  SRR4302533.913841/1‑94 (MQ=60)
            AGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTC                                                                                   >  SRR4302533.1210386/1‑94 (MQ=60)
            AGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTC                                                                                   <  SRR4302533.5583029/94‑1 (MQ=60)
             GTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCC                                                                                  >  SRR4302533.5271525/1‑94 (MQ=60)
             GTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCC                                                                                  <  SRR4302533.1530069/94‑1 (MQ=60)
               GGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTG                                                                                <  SRR4302533.3254096/94‑1 (MQ=60)
                 CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT                                                                              >  SRR4302533.113067/1‑94 (MQ=60)
                 CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT                                                                              >  SRR4302533.2684208/1‑94 (MQ=60)
                 CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT                                                                              <  SRR4302533.1192434/94‑1 (MQ=60)
                  GAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATG                                                                             >  SRR4302533.4931907/1‑94 (MQ=60)
                   AAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGA                                                                            <  SRR4302533.948060/94‑1 (MQ=60)
                   AAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGA                                                                            >  SRR4302533.2756008/1‑94 (MQ=60)
                   AAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGA                                                                            <  SRR4302533.2555096/94‑1 (MQ=60)
                    AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC                                                                           <  SRR4302533.2412112/94‑1 (MQ=60)
                    AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC                                                                           <  SRR4302533.6106548/94‑1 (MQ=60)
                    AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC                                                                           <  SRR4302533.5163112/94‑1 (MQ=60)
                     GATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACA                                                                          >  SRR4302533.4525360/1‑94 (MQ=60)
                      ATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAT                                                                         >  SRR4302533.4900552/1‑94 (MQ=60)
                       TATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATC                                                                        >  SRR4302533.2876039/1‑94 (MQ=60)
                       TATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATC                                                                        >  SRR4302533.4454504/1‑94 (MQ=60)
                        ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT                                                                       <  SRR4302533.2538635/94‑1 (MQ=60)
                        ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT                                                                       >  SRR4302533.4729108/1‑94 (MQ=60)
                        ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT                                                                       <  SRR4302533.670174/94‑1 (MQ=60)
                         TCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTA                                                                      <  SRR4302533.2872431/94‑1 (MQ=60)
                         TCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTA                                                                      <  SRR4302533.2872430/94‑1 (MQ=60)
                          CTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTAC                                                                     >  SRR4302533.1805511/1‑94 (MQ=60)
                           TTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACG                                                                    <  SRR4302533.4878670/94‑1 (MQ=60)
                             TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT                                                                  >  SRR4302533.4751821/1‑94 (MQ=60)
                             TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT                                                                  >  SRR4302533.1624883/1‑94 (MQ=60)
                             TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT                                                                  <  SRR4302533.3352135/94‑1 (MQ=60)
                               GTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTC                                                                >  SRR4302533.2302089/1‑94 (MQ=60)
                                GGATGGCGTACTGGAGATAGTGCAGGATCGATTTGGTTTCCTCCGTACCGCAGACAGCTCCCTCCGCGCCGGTCCTGATGACATCTACGTTTCC                                                               <  SRR4302533.850638/94‑1 (MQ=60)
                                 GATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCC                                                              <  SRR4302533.3407454/94‑1 (MQ=60)
                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            >  SRR4302533.4145738/1‑94 (MQ=60)
                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            <  SRR4302533.5365851/94‑1 (MQ=60)
                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            >  SRR4302533.762518/1‑94 (MQ=60)
                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            >  SRR4302533.382198/1‑94 (MQ=60)
                                    GTCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTA                                                           <  SRR4302533.2000577/94‑1 (MQ=60)
                                    GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTA                                                           >  SRR4302533.3368180/1‑94 (MQ=60)
                                     GCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAG                                                          <  SRR4302533.1536946/94‑1 (MQ=60)
                                         TCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA                                                      <  SRR4302533.5830897/94‑1 (MQ=60)
                                         TCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA                                                      <  SRR4302533.3324755/94‑1 (MQ=60)
                                         ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA                                                      >  SRR4302533.6029636/1‑94 (MQ=60)
                                              AGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCG                                                 >  SRR4302533.5828024/1‑94 (MQ=60)
                                                 AATTGCAGGATGGATTGGGTTTCCCCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCG                                              <  SRR4302533.2921901/94‑1 (MQ=60)
                                                   TTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTT                                            <  SRR4302533.178322/94‑1 (MQ=60)
                                                    TGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTT                                           <  SRR4302533.4425813/94‑1 (MQ=60)
                                                    TGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTT                                           >  SRR4302533.1645228/1‑94 (MQ=60)
                                                     GCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTC                                          >  SRR4302533.4488870/1‑94 (MQ=60)
                                                     GCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTC                                          >  SRR4302533.1432569/1‑94 (MQ=60)
                                                      CAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCA                                         >  SRR4302533.5043727/1‑94 (MQ=60)
                                                      CAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCA                                         >  SRR4302533.5476631/1‑94 (MQ=60)
                                                       AGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAA                                        >  SRR4302533.2032388/1‑94 (MQ=60)
                                                        GGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC                                       >  SRR4302533.2969268/1‑94 (MQ=60)
                                                        GGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCGCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC                                       <  SRR4302533.1247783/94‑1 (MQ=60)
                                                          ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT                                     <  SRR4302533.3783509/94‑1 (MQ=60)
                                                          ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT                                     >  SRR4302533.4694268/1‑94 (MQ=60)
                                                          ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT                                     >  SRR4302533.2446460/1‑94 (MQ=60)
                                                           TGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTC                                    >  SRR4302533.905166/1‑94 (MQ=60)
                                                            GGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCC                                   >  SRR4302533.4927078/1‑94 (MQ=60)
                                                             GATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCG                                  >  SRR4302533.5896082/1‑94 (MQ=60)
                                                                  GGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTG                             >  SRR4302533.2763876/1‑94 (MQ=60)
                                                                   GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG                            >  SRR4302533.5382909/1‑94 (MQ=60)
                                                                   GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG                            <  SRR4302533.4937006/94‑1 (MQ=60)
                                                                   GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG                            <  SRR4302533.4111834/94‑1 (MQ=60)
                                                                    TTTCCTCCGTTCCTCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT                           <  SRR4302533.1899406/94‑1 (MQ=60)
                                                                    TTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT                           <  SRR4302533.298593/94‑1 (MQ=60)
                                                                    TTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT                           >  SRR4302533.3052331/1‑94 (MQ=60)
                                                                     TTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTG                          >  SRR4302533.3653416/1‑94 (MQ=60)
                                                                     TTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTG                          >  SRR4302533.112091/1‑94 (MQ=60)
                                                                      TCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGA                         >  SRR4302533.3691496/1‑94 (MQ=60)
                                                                       CCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAT                        >  SRR4302533.5722582/1‑94 (MQ=60)
                                                                         TCCGTTCCGCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAC                      <  SRR4302533.519603/94‑1 (MQ=60)
                                                                         CCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAC                      <  SRR4302533.1540970/94‑1 (MQ=60)
                                                                          CCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACC                     >  SRR4302533.559731/1‑94 (MQ=60)
                                                                            GTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT                   <  SRR4302533.6284736/94‑1 (MQ=60)
                                                                            GTTCCGCAGACAGCCCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT                   <  SRR4302533.1368609/94‑1 (MQ=60)
                                                                             TTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATC                  <  SRR4302533.4690354/94‑1 (MQ=60)
                                                                             TTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATC                  <  SRR4302533.1211434/94‑1 (MQ=60)
                                                                             TTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATC                  <  SRR4302533.562903/94‑1 (MQ=60)
                                                                                  CAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGG             >  SRR4302533.3121517/1‑94 (MQ=60)
                                                                                  CAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGG             <  SRR4302533.1100643/94‑1 (MQ=60)
                                                                                   AGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGT            >  SRR4302533.3411350/1‑94 (MQ=60)
                                                                                   AGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGT            >  SRR4302533.1144715/1‑94 (MQ=60)
                                                                                     ACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA          >  SRR4302533.3737412/1‑94 (MQ=60)
                                                                                     ACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA          <  SRR4302533.1472560/94‑1 (MQ=60)
                                                                                     ACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA          <  SRR4302533.2416528/94‑1 (MQ=60)
                                                                                      CAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAG         <  SRR4302533.3988341/94‑1 (MQ=60)
                                                                                       AGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGA        <  SRR4302533.4055811/94‑1 (MQ=60)
                                                                                        GCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAT       <  SRR4302533.612423/94‑1 (MQ=60)
                                                                                        GCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAT       <  SRR4302533.3845660/94‑1 (MQ=60)
                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      >  SRR4302533.6193361/1‑94 (MQ=60)
                                                                                          TCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTC     >  SRR4302533.1065023/1‑94 (MQ=60)
                                                                                          TCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTC     <  SRR4302533.5629699/94‑1 (MQ=60)
                                                                                          TCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTC     <  SRR4302533.4953940/94‑1 (MQ=60)
                                                                                           CCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCG    >  SRR4302533.2423862/1‑94 (MQ=60)
                                                                                           CCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCG    <  SRR4302533.3760275/94‑1 (MQ=60)
                                                                                            CCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGC   >  SRR4302533.2297485/1‑94 (MQ=60)
                                                                                            CCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGC   <  SRR4302533.424141/94‑1 (MQ=60)
                                                                                             CACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC  >  SRR4302533.2660915/1‑94 (MQ=60)
                                                                                             CACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC  >  SRR4302533.4757171/1‑94 (MQ=60)
                                                                                             |                                                                                             
CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC  >  NC_000913/3964152‑3964338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: