Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
3,964,245 |
T→C |
Y72H (TAC→CAC) |
rho → |
transcription termination factor Rho |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 3,964,245 | 0 | T | C | 100.0%
| 659.5
/ NA
| 205 | Y72H (TAC→CAC) | rho | transcription termination factor Rho |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (108/97); total (108/97) |
Only 100 of 211 total aligned reads displayed.
CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT > NC_000913/3964155‑3964334
|
caCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAc < 1:4353221/93‑1 (MQ=255)
aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAcc > 1:6217609/1‑93 (MQ=255)
aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAcc < 2:1920277/93‑1 (MQ=255)
cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt < 1:1354314/93‑1 (MQ=255)
cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt < 1:1371270/93‑1 (MQ=255)
cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt > 2:5464390/1‑93 (MQ=255)
cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt < 1:1779787/93‑1 (MQ=255)
cAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTcc > 1:53038/1‑92 (MQ=255)
cAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCg > 1:1014299/1‑93 (MQ=255)
aaaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGc > 2:4084210/1‑93 (MQ=255)
aaaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGc > 2:2389861/1‑93 (MQ=255)
aaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGcc > 2:3058323/1‑93 (MQ=255)
aaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGcc > 1:2761279/1‑93 (MQ=255)
agagTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCg > 1:2354629/1‑93 (MQ=255)
agagTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCg < 1:659076/93‑1 (MQ=255)
agTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGt < 1:5549517/93‑1 (MQ=255)
tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTcc < 2:4095925/93‑1 (MQ=255)
ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCt < 2:2763839/93‑1 (MQ=255)
ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCt < 2:4853622/93‑1 (MQ=255)
gCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtg < 2:4990123/93‑1 (MQ=255)
cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtga > 2:3169254/1‑93 (MQ=255)
cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtga < 1:1185320/93‑1 (MQ=255)
gAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgat < 2:4388449/93‑1 (MQ=255)
gAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgat > 1:2667839/1‑93 (MQ=255)
aaGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatg < 1:942515/93‑1 (MQ=255)
aaGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatg > 1:4902203/1‑93 (MQ=255)
aaGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatg < 2:2957839/93‑1 (MQ=255)
aGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatga > 1:2739211/1‑93 (MQ=255)
aGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatga > 2:2472857/1‑93 (MQ=255)
atatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACa > 1:4498119/1‑93 (MQ=255)
tatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAt > 2:6177771/1‑93 (MQ=255)
tatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAt > 1:4871034/1‑93 (MQ=255)
atCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATc > 1:4427740/1‑93 (MQ=255)
atCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATc > 2:4101668/1‑93 (MQ=255)
atCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATc < 1:2523090/93‑1 (MQ=255)
tCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCt < 1:2854864/93‑1 (MQ=255)
cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTa > 2:3640053/1‑93 (MQ=255)
ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt > 1:4723186/1‑93 (MQ=255)
ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt < 2:4335744/93‑1 (MQ=255)
ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt < 2:1557492/93‑1 (MQ=255)
ggTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGtt > 1:1615090/1‑93 (MQ=255)
gTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGttt < 2:2711790/93‑1 (MQ=255)
gTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGttt > 2:4195175/1‑93 (MQ=255)
aTGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTccc > 2:5653628/1‑93 (MQ=255)
ggCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCt > 1:758056/1‑93 (MQ=255)
gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGATAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa > 2:2069196/1‑93 (MQ=255)
gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa < 2:3252845/93‑1 (MQ=255)
gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa > 1:3347499/1‑93 (MQ=255)
gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa < 2:666495/93‑1 (MQ=255)
gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa < 1:1527753/93‑1 (MQ=255)
tACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGcc > 2:5970183/1‑93 (MQ=255)
tcTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCa < 1:3304350/92‑1 (MQ=255)
cTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaa < 2:5396024/93‑1 (MQ=255)
tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaaa > 2:1270045/1‑93 (MQ=255)
tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaaa > 2:5851898/1‑93 (MQ=255)
gagaTATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATc > 2:4506297/1‑93 (MQ=255)
gaTATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccg > 1:5793027/1‑93 (MQ=255)
aatTGCAGGATGGATTGGGTTTCCCCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgcc < 1:2904064/92‑1 (MQ=255)
ttGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGt > 2:3598562/1‑93 (MQ=255)
gCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGttt < 2:6196595/93‑1 (MQ=255)
cAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTc < 2:1414591/93‑1 (MQ=255)
aGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCa > 1:5013352/1‑93 (MQ=255)
ggatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCaa > 1:2019947/1‑93 (MQ=255)
ggatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCaa > 2:1392433/1‑93 (MQ=255)
gatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAc < 2:953833/93‑1 (MQ=255)
atggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAcc < 1:3760460/93‑1 (MQ=255)
tggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGTTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCt < 2:1812298/93‑1 (MQ=255)
tggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCt > 1:4665999/1‑93 (MQ=255)
ggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTc > 1:899886/1‑93 (MQ=255)
ggatTTGGTTTCCTCCGTTCCGCAGACAGCTACCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCACCCTc < 2:1701495/93‑1 (MQ=255)
gatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCTCTAGCCAAATCCGCCGTTTCAACCTcc > 2:6268595/1‑93 (MQ=255)
gatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTcc > 2:1050680/1‑93 (MQ=255)
atTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCg > 2:3008721/1‑93 (MQ=255)
atTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCg > 1:5860651/1‑93 (MQ=255)
gTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTg < 2:1782298/93‑1 (MQ=255)
gTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTg < 1:4086954/93‑1 (MQ=255)
tttCCTCCGTTCCTCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTgg < 1:1887876/93‑1 (MQ=255)
tttCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTgg > 1:5350802/1‑93 (MQ=255)
tttCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTgg < 1:296775/93‑1 (MQ=255)
tcctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTg > 1:111387/1‑93 (MQ=255)
cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa > 2:5740471/1‑93 (MQ=255)
cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa > 2:5113560/1‑93 (MQ=255)
cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa > 1:3668946/1‑93 (MQ=255)
ctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAt > 1:5688224/1‑93 (MQ=255)
ctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAt > 2:3322092/1‑93 (MQ=255)
tccGTTCCGCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATa < 1:516538/93‑1 (MQ=255)
tccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATa > 2:464500/1‑93 (MQ=255)
ttCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAt < 1:559580/93‑1 (MQ=255)
ttCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAt < 1:1204195/93‑1 (MQ=255)
gCAGACGGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTGCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATctct < 2:3724198/93‑1 (MQ=255)
aGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTgg > 1:3102444/1‑93 (MQ=255)
aGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTgg > 2:3816232/1‑93 (MQ=255)
gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGt > 1:3390412/1‑93 (MQ=255)
gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGt > 2:5500418/1‑93 (MQ=255)
gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGt > 1:1137945/1‑93 (MQ=255)
aCAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa < 1:2401695/93‑1 (MQ=255)
aCAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa < 1:1463736/93‑1 (MQ=255)
cAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTaa < 1:3964192/93‑1 (MQ=255)
cAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTaa < 2:2275782/93‑1 (MQ=255)
gCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGa < 1:608840/93‑1 (MQ=255)
|
CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT > NC_000913/3964155‑3964334
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC > NC_000913/3964152‑3964338
|
CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCC < SRR4302533.243859/94‑1 (MQ=60)
AGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCA > SRR4302533.3988815/1‑94 (MQ=60)
CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACC < SRR4302533.2754271/94‑1 (MQ=60)
CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACC > SRR4302533.6254892/1‑94 (MQ=60)
CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACC < SRR4302533.4379493/94‑1 (MQ=60)
CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC < SRR4302533.1157401/94‑1 (MQ=60)
CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC < SRR4302533.1790622/94‑1 (MQ=60)
CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC < SRR4302533.1362455/94‑1 (MQ=60)
CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC > SRR4302533.818761/1‑94 (MQ=60)
CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC < SRR4302533.1379512/94‑1 (MQ=60)
GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG < SRR4302533.2789422/94‑1 (MQ=60)
GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG > SRR4302533.1020239/1‑94 (MQ=60)
GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCC > SRR4302533.53396/1‑94 (MQ=60)
AAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCC > SRR4302533.2778205/1‑94 (MQ=60)
AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG > SRR4302533.2369191/1‑94 (MQ=60)
AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG < SRR4302533.5817344/94‑1 (MQ=60)
AGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGG < SRR4302533.662959/94‑1 (MQ=60)
GAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGC > SRR4302533.913841/1‑94 (MQ=60)
AGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTC > SRR4302533.1210386/1‑94 (MQ=60)
AGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTC < SRR4302533.5583029/94‑1 (MQ=60)
GTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCC > SRR4302533.5271525/1‑94 (MQ=60)
GTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCC < SRR4302533.1530069/94‑1 (MQ=60)
GGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTG < SRR4302533.3254096/94‑1 (MQ=60)
CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT > SRR4302533.113067/1‑94 (MQ=60)
CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT > SRR4302533.2684208/1‑94 (MQ=60)
CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT < SRR4302533.1192434/94‑1 (MQ=60)
GAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATG > SRR4302533.4931907/1‑94 (MQ=60)
AAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGA < SRR4302533.948060/94‑1 (MQ=60)
AAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGA > SRR4302533.2756008/1‑94 (MQ=60)
AAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGA < SRR4302533.2555096/94‑1 (MQ=60)
AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC < SRR4302533.2412112/94‑1 (MQ=60)
AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC < SRR4302533.6106548/94‑1 (MQ=60)
AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC < SRR4302533.5163112/94‑1 (MQ=60)
GATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACA > SRR4302533.4525360/1‑94 (MQ=60)
ATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAT > SRR4302533.4900552/1‑94 (MQ=60)
TATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATC > SRR4302533.2876039/1‑94 (MQ=60)
TATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATC > SRR4302533.4454504/1‑94 (MQ=60)
ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT < SRR4302533.2538635/94‑1 (MQ=60)
ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT > SRR4302533.4729108/1‑94 (MQ=60)
ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT < SRR4302533.670174/94‑1 (MQ=60)
TCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTA < SRR4302533.2872431/94‑1 (MQ=60)
TCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTA < SRR4302533.2872430/94‑1 (MQ=60)
CTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTAC > SRR4302533.1805511/1‑94 (MQ=60)
TTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACG < SRR4302533.4878670/94‑1 (MQ=60)
TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT > SRR4302533.4751821/1‑94 (MQ=60)
TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT > SRR4302533.1624883/1‑94 (MQ=60)
TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT < SRR4302533.3352135/94‑1 (MQ=60)
GTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTC > SRR4302533.2302089/1‑94 (MQ=60)
GGATGGCGTACTGGAGATAGTGCAGGATCGATTTGGTTTCCTCCGTACCGCAGACAGCTCCCTCCGCGCCGGTCCTGATGACATCTACGTTTCC < SRR4302533.850638/94‑1 (MQ=60)
GATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCC < SRR4302533.3407454/94‑1 (MQ=60)
TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT > SRR4302533.4145738/1‑94 (MQ=60)
TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT < SRR4302533.5365851/94‑1 (MQ=60)
TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT > SRR4302533.762518/1‑94 (MQ=60)
TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT > SRR4302533.382198/1‑94 (MQ=60)
GTCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTA < SRR4302533.2000577/94‑1 (MQ=60)
GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTA > SRR4302533.3368180/1‑94 (MQ=60)
GCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAG < SRR4302533.1536946/94‑1 (MQ=60)
TCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA < SRR4302533.5830897/94‑1 (MQ=60)
TCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA < SRR4302533.3324755/94‑1 (MQ=60)
ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA > SRR4302533.6029636/1‑94 (MQ=60)
AGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCG > SRR4302533.5828024/1‑94 (MQ=60)
AATTGCAGGATGGATTGGGTTTCCCCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCG < SRR4302533.2921901/94‑1 (MQ=60)
TTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTT < SRR4302533.178322/94‑1 (MQ=60)
TGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTT < SRR4302533.4425813/94‑1 (MQ=60)
TGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTT > SRR4302533.1645228/1‑94 (MQ=60)
GCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTC > SRR4302533.4488870/1‑94 (MQ=60)
GCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTC > SRR4302533.1432569/1‑94 (MQ=60)
CAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCA > SRR4302533.5043727/1‑94 (MQ=60)
CAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCA > SRR4302533.5476631/1‑94 (MQ=60)
AGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAA > SRR4302533.2032388/1‑94 (MQ=60)
GGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC > SRR4302533.2969268/1‑94 (MQ=60)
GGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCGCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC < SRR4302533.1247783/94‑1 (MQ=60)
ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT < SRR4302533.3783509/94‑1 (MQ=60)
ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT > SRR4302533.4694268/1‑94 (MQ=60)
ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT > SRR4302533.2446460/1‑94 (MQ=60)
TGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTC > SRR4302533.905166/1‑94 (MQ=60)
GGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCC > SRR4302533.4927078/1‑94 (MQ=60)
GATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCG > SRR4302533.5896082/1‑94 (MQ=60)
GGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTG > SRR4302533.2763876/1‑94 (MQ=60)
GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG > SRR4302533.5382909/1‑94 (MQ=60)
GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG < SRR4302533.4937006/94‑1 (MQ=60)
GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG < SRR4302533.4111834/94‑1 (MQ=60)
TTTCCTCCGTTCCTCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT < SRR4302533.1899406/94‑1 (MQ=60)
TTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT < SRR4302533.298593/94‑1 (MQ=60)
TTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT > SRR4302533.3052331/1‑94 (MQ=60)
TTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTG > SRR4302533.3653416/1‑94 (MQ=60)
TTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTG > SRR4302533.112091/1‑94 (MQ=60)
TCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGA > SRR4302533.3691496/1‑94 (MQ=60)
CCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAT > SRR4302533.5722582/1‑94 (MQ=60)
TCCGTTCCGCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAC < SRR4302533.519603/94‑1 (MQ=60)
CCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAC < SRR4302533.1540970/94‑1 (MQ=60)
CCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACC > SRR4302533.559731/1‑94 (MQ=60)
GTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT < SRR4302533.6284736/94‑1 (MQ=60)
GTTCCGCAGACAGCCCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT < SRR4302533.1368609/94‑1 (MQ=60)
TTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATC < SRR4302533.4690354/94‑1 (MQ=60)
TTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATC < SRR4302533.1211434/94‑1 (MQ=60)
TTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATC < SRR4302533.562903/94‑1 (MQ=60)
CAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGG > SRR4302533.3121517/1‑94 (MQ=60)
CAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGG < SRR4302533.1100643/94‑1 (MQ=60)
AGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGT > SRR4302533.3411350/1‑94 (MQ=60)
AGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGT > SRR4302533.1144715/1‑94 (MQ=60)
ACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA > SRR4302533.3737412/1‑94 (MQ=60)
ACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA < SRR4302533.1472560/94‑1 (MQ=60)
ACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA < SRR4302533.2416528/94‑1 (MQ=60)
CAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAG < SRR4302533.3988341/94‑1 (MQ=60)
AGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGA < SRR4302533.4055811/94‑1 (MQ=60)
GCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAT < SRR4302533.612423/94‑1 (MQ=60)
GCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAT < SRR4302533.3845660/94‑1 (MQ=60)
CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT > SRR4302533.6193361/1‑94 (MQ=60)
TCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTC > SRR4302533.1065023/1‑94 (MQ=60)
TCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTC < SRR4302533.5629699/94‑1 (MQ=60)
TCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTC < SRR4302533.4953940/94‑1 (MQ=60)
CCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCG > SRR4302533.2423862/1‑94 (MQ=60)
CCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCG < SRR4302533.3760275/94‑1 (MQ=60)
CCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGC > SRR4302533.2297485/1‑94 (MQ=60)
CCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGC < SRR4302533.424141/94‑1 (MQ=60)
CACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC > SRR4302533.2660915/1‑94 (MQ=60)
CACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC > SRR4302533.4757171/1‑94 (MQ=60)
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CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC > NC_000913/3964152‑3964338
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Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |