Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,964,245	T→C	Y72H (TAC→CAC)	rho →	transcription termination factor Rho

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,964,245	0	T	C	99.8%	1548.7 / NA	487	Y72H (TAC→CAC)	rho	transcription termination factor Rho
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (243/243); minor base A (0/1); total (243/244)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 501 total aligned reads displayed.

CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT  >  NC_000913/3964155‑3964334

caCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAc                                                                                         >  2:961255/1‑93 (MQ=255)

caCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAc                                                                                         >  2:3992789/1‑93 (MQ=255)

caCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAc                                                                                         <  1:7573437/93‑1 (MQ=255)

 actcAAAGAGCGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTTCAGGATGGATTTGGTTTCCTCCGTTCCTCAGACAGCTTCCAcc                                                                                        >  2:8959508/4‑93 (MQ=255)

 aCGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCAcc                                                                                        <  2:5680394/93‑1 (MQ=255)

  cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt                                                                                       >  2:6812474/1‑93 (MQ=255)

  cGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCt                                                                                       <  1:8844783/93‑1 (MQ=255)

     aaaGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGc                                                                                    <  2:5035475/93‑1 (MQ=255)

       agagTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCg                                                                                  >  1:8613164/1‑93 (MQ=255)

        gagTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCgg                                                                                 <  2:3606297/93‑1 (MQ=255)

          gTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTc                                                                               <  1:1137534/93‑1 (MQ=255)

           tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGtac                                                                              >  2:2626217/1‑91 (MQ=255)

           tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTcc                                                                              <  1:9055632/93‑1 (MQ=255)

           tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTcc                                                                              <  1:9805930/93‑1 (MQ=255)

           tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTcc                                                                              <  2:3377316/93‑1 (MQ=255)

           tGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTcc                                                                              <  1:4482101/93‑1 (MQ=255)

            ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCt                                                                             >  1:6981712/1‑93 (MQ=255)

            ggCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCt                                                                             <  2:8887398/93‑1 (MQ=255)

             gCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtg                                                                            >  2:2769845/1‑93 (MQ=255)

              cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtga                                                                           <  1:10017030/93‑1 (MQ=255)

              cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtga                                                                           <  1:4249596/93‑1 (MQ=255)

              cGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtga                                                                           <  2:3717836/93‑1 (MQ=255)

               gAAGATATCTTTGGTGATGGCTTACTGGAGATATTTCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgat                                                                          >  1:1825612/1‑93 (MQ=255)

                aaGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatg                                                                         >  1:4879229/1‑93 (MQ=255)

                 aGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatga                                                                        <  2:9307351/93‑1 (MQ=255)

                 aGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCtgatga                                                                        <  1:6868532/93‑1 (MQ=255)

                   atatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACa                                                                      >  2:2976084/1‑93 (MQ=255)

                   atatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACa                                                                      <  2:7935180/93‑1 (MQ=255)

                    tatCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAt                                                                     >  1:9384649/1‑93 (MQ=255)

                     atCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATc                                                                    >  2:3510344/1‑93 (MQ=255)

                       cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTa                                                                  <  2:104999/93‑1 (MQ=255)

                       cTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTa                                                                  >  1:2457163/1‑93 (MQ=255)

                         ttGGTGATGGCGTACTGGAGATGTTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACg                                                                >  2:6410976/1‑93 (MQ=255)

                          tGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGt                                                               >  2:8152872/1‑93 (MQ=255)

                          tGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGt                                                               <  2:7002645/93‑1 (MQ=255)

                          tGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGt                                                               >  1:7986517/1‑93 (MQ=255)

                            gTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGttt                                                             >  2:1559041/1‑93 (MQ=255)

                             ggATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTc                                                            <  1:1440364/92‑1 (MQ=255)

                               gtGGCGTACTGGAGATATTGCAGGATGGAGTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTccc                                                          <  2:3885437/92‑1 (MQ=255)

                               aTGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTccc                                                          >  2:4635418/1‑93 (MQ=255)

                                tGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTcccc                                                         <  1:8410144/93‑1 (MQ=255)

                                tGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTcccc                                                         <  1:3079249/93‑1 (MQ=255)

                                 ggCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCt                                                        >  1:7275410/1‑93 (MQ=255)

                                  gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTa                                                       <  2:4415421/93‑1 (MQ=255)

                                    gTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGc                                                     <  1:5005314/93‑1 (MQ=255)

                                    gTACTGGAGATATTGCAGGATGACTTTGGTTTGCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGc                                                     <  2:5504413/93‑1 (MQ=255)

                                     tACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGcc                                                    >  2:3157596/1‑93 (MQ=255)

                                     tACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGcc                                                    >  1:9475661/1‑93 (MQ=255)

                                      aCTGGAGATATTGGAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCa                                                   >  1:6718373/1‑93 (MQ=255)

                                       cTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaa                                                  >  1:9958437/1‑93 (MQ=255)

                                        tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaaa                                                 >  1:8244552/1‑93 (MQ=255)

                                        tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaaa                                                 >  2:2229933/1‑93 (MQ=255)

                                        tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCaaa                                                 >  1:5914897/1‑93 (MQ=255)

                                         ggAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAt                                                >  1:2676757/1‑93 (MQ=255)

                                           agaTATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATcc                                              >  2:756931/1‑93 (MQ=255)

                                            gaTATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccg                                             <  2:6047465/93‑1 (MQ=255)

                                             atatTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgc                                            <  1:2075012/93‑1 (MQ=255)

                                             atagTGCAGGATGGATGTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgc                                            <  2:8556562/93‑1 (MQ=255)

                                               atTGCAGGATGGATTTGGTTTCCTCCGTTTCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgcgg                                          >  2:830912/1‑91 (MQ=255)

                                               atTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATccgccg                                          >  2:1716026/1‑93 (MQ=255)

                                                   cAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTAAGTTTCCCCTAGCCAACTCCGCCGTTTc                                      >  2:5899708/1‑93 (MQ=255)

                                                     ggatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCaa                                    >  2:515541/1‑93 (MQ=255)

                                                      gatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAc                                   <  2:180651/93‑1 (MQ=255)

                                                       atggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAcc                                  >  1:7673513/1‑93 (MQ=255)

                                                        tggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCt                                 >  1:5216834/1‑93 (MQ=255)

                                                         ggctttGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGCTTCCCCTAGCCAAATCCGCCGTTTCAACCTc                                >  2:5252882/4‑93 (MQ=255)

                                                           atTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCg                              <  1:4301319/93‑1 (MQ=255)

                                                             ttGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCa                            <  2:7214495/93‑1 (MQ=255)

                                                             ttGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCa                            <  2:1381190/93‑1 (MQ=255)

                                                             ttGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCa                            >  1:620475/1‑93 (MQ=255)

                                                               ggTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACt                          <  1:1923593/93‑1 (MQ=255)

                                                               ggTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACt                          <  1:5439003/93‑1 (MQ=255)

                                                               ggTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACt                          >  1:5603595/1‑93 (MQ=255)

                                                                gTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTg                         <  1:1485440/93‑1 (MQ=255)

                                                                 tttCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTgg                        <  1:2230239/93‑1 (MQ=255)

                                                                  ttCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGt                       <  2:4782826/93‑1 (MQ=255)

                                                                   tcctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTg                      <  2:7726378/93‑1 (MQ=255)

                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     <  2:1944428/93‑1 (MQ=255)

                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     <  1:3611725/93‑1 (MQ=255)

                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     >  1:6615497/1‑93 (MQ=255)

                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     <  2:5449151/93‑1 (MQ=255)

                                                                    cctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGa                     <  2:1231251/93‑1 (MQ=255)

                                                                     ctccGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAt                    >  2:1448547/1‑93 (MQ=255)

                                                                         gTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCa                >  1:3884145/1‑93 (MQ=255)

                                                                         gTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCa                >  2:7816364/1‑93 (MQ=255)

                                                                         gTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCa                <  2:7436996/93‑1 (MQ=255)

                                                                            ccGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAtct             <  1:2979711/93‑1 (MQ=255)

                                                                            ccGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAtct             <  2:6574611/93‑1 (MQ=255)

                                                                             cGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAtctc            <  1:3518571/93‑1 (MQ=255)

                                                                              gCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGCTACCATctct           >  1:4663029/1‑93 (MQ=255)

                                                                              gCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATctct           >  2:6195244/1‑93 (MQ=255)

                                                                              gCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATctct           <  2:9127540/93‑1 (MQ=255)

                                                                               cAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTg          <  2:4248783/93‑1 (MQ=255)

                                                                                 gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGGCAAATCCGCCGTTTCAACCTCCGCACTTGTGATACCATCTCTGGt        >  2:6121026/1‑93 (MQ=255)

                                                                                 gACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGt        <  1:156241/93‑1 (MQ=255)

                                                                                   cAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTaa      <  2:8673124/93‑1 (MQ=255)

                                                                                    aGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAg     <  1:3262281/93‑1 (MQ=255)

                                                                                       tCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAtt  >  1:2890887/1‑93 (MQ=255)

                                                                                       tCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAtt  >  1:8967312/1‑93 (MQ=255)

                                                                                       tCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAtt  >  1:4627252/1‑93 (MQ=255)

CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT  >  NC_000913/3964155‑3964334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 252 total aligned reads displayed.

CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC  >  NC_000913/3964152‑3964338

CAGCACGCAAAGAGTGTCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGGTTCCTCCGTTCCGCAGACAGCTCCC                                                                                               <  SRR4302540.2548088/94‑1 (MQ=60)

 AGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCA                                                                                              <  SRR4302540.10108865/94‑1 (MQ=60)

 AGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCA                                                                                              >  SRR4302540.372779/1‑94 (MQ=60)

 AGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCA                                                                                              >  SRR4302540.761995/1‑94 (MQ=60)

 AGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCA                                                                                              >  SRR4302540.2244413/1‑94 (MQ=60)

   CACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACC                                                                                            <  SRR4302540.7658398/94‑1 (MQ=60)

    ACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCT                                                                                           >  SRR4302540.3680854/1‑94 (MQ=60)

    ACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCT                                                                                           <  SRR4302540.9642792/94‑1 (MQ=60)

    ACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCT                                                                                           >  SRR4302540.6149484/1‑94 (MQ=60)

     CGNANANAGNGGCGAAGNTANNNTTNGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          <  SRR4302540.1353523/94‑1 (MQ=60)

     CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          >  SRR4302540.6315154/1‑94 (MQ=60)

     CGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTC                                                                                          <  SRR4302540.8947098/94‑1 (MQ=60)

      GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG                                                                                         >  SRR4302540.590931/1‑94 (MQ=60)

      GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG                                                                                         <  SRR4302540.8905508/94‑1 (MQ=60)

      GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG                                                                                         <  SRR4302540.862500/94‑1 (MQ=60)

      GCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCG                                                                                         >  SRR4302540.8457227/1‑94 (MQ=60)

       CAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGC                                                                                        >  SRR4302540.720812/1‑94 (MQ=60)

        AAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCC                                                                                       >  SRR4302540.5146535/1‑94 (MQ=60)

         AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG                                                                                      <  SRR4302540.2131767/94‑1 (MQ=60)

         AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG                                                                                      >  SRR4302540.5627575/1‑94 (MQ=60)

         AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG                                                                                      >  SRR4302540.8713243/1‑94 (MQ=60)

         AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCG                                                                                      <  SRR4302540.1865809/94‑1 (MQ=60)

         AAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCCCCG                                                                                      >  SRR4302540.3215415/1‑94 (MQ=60)

          AGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGG                                                                                     <  SRR4302540.1860800/94‑1 (MQ=60)

          AGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGG                                                                                     <  SRR4302540.7717115/94‑1 (MQ=60)

          AGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGG                                                                                     <  SRR4302540.8327941/94‑1 (MQ=60)

          AGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGG                                                                                     <  SRR4302540.8979940/94‑1 (MQ=60)

             GTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGcac                                                                                  >  SRR4302540.7957143/1‑91 (MQ=60)

             GTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCC                                                                                  <  SRR4302540.1149409/94‑1 (MQ=60)

              TGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCT                                                                                 <  SRR4302540.9920709/94‑1 (MQ=60)

              TGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCT                                                                                 <  SRR4302540.9164347/94‑1 (MQ=60)

              TGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCT                                                                                 <  SRR4302540.4530708/94‑1 (MQ=60)

                 CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT                                                                              >  SRR4302540.4350159/1‑94 (MQ=60)

                 CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT                                                                              <  SRR4302540.9258688/94‑1 (MQ=60)

                 CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT                                                                              <  SRR4302540.4295831/94‑1 (MQ=60)

                 CGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGAT                                                                              <  SRR4302540.10133627/94‑1 (MQ=60)

                  GAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATG                                                                             >  SRR4302540.4474088/1‑94 (MQ=60)

                  GAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATG                                                                             >  SRR4302540.4931617/1‑94 (MQ=60)

                  GAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATG                                                                             <  SRR4302540.1111235/94‑1 (MQ=60)

                   AAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGA                                                                            <  SRR4302540.420842/94‑1 (MQ=60)

                    AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC                                                                           <  SRR4302540.10051262/94‑1 (MQ=60)

                    AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC                                                                           <  SRR4302540.3524701/94‑1 (MQ=60)

                    AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC                                                                           <  SRR4302540.8918233/94‑1 (MQ=60)

                    AGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGAC                                                                           >  SRR4302540.7492332/1‑94 (MQ=60)

                     GATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACA                                                                          <  SRR4302540.4975634/94‑1 (MQ=60)

                     GATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACA                                                                          >  SRR4302540.1549746/1‑94 (MQ=60)

                     GATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACA                                                                          <  SRR4302540.7666710/94‑1 (MQ=60)

                     GATATCTTTGGTGAGGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACA                                                                          <  SRR4302540.7671486/94‑1 (MQ=60)

                      ATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAT                                                                         >  SRR4302540.9582683/1‑94 (MQ=60)

                      ATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAT                                                                         >  SRR4302540.9496351/1‑94 (MQ=60)

                      ATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAT                                                                         <  SRR4302540.6489425/94‑1 (MQ=60)

                      ATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACAT                                                                         <  SRR4302540.2036488/94‑1 (MQ=60)

                       TATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATC                                                                        <  SRR4302540.9092457/94‑1 (MQ=60)

                       TATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATC                                                                        <  SRR4302540.4546760/94‑1 (MQ=60)

                       TATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATC                                                                        >  SRR4302540.7034502/1‑94 (MQ=60)

                        ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT                                                                       >  SRR4302540.4885016/1‑94 (MQ=60)

                        ATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCT                                                                       >  SRR4302540.2732849/1‑94 (MQ=60)

                         TCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTA                                                                      >  SRR4302540.9904366/1‑94 (MQ=60)

                         TCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTA                                                                      >  SRR4302540.7051920/1‑94 (MQ=60)

                          CTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACTTCGCCGGTCCTGATGACATCTAC                                                                     <  SRR4302540.1865076/94‑1 (MQ=60)

                           TTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACG                                                                    <  SRR4302540.6823141/94‑1 (MQ=60)

                           CTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACG                                                                    <  SRR4302540.6823139/94‑1 (MQ=60)

                            TTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGT                                                                   >  SRR4302540.4258878/1‑94 (MQ=60)

                            TTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGT                                                                   >  SRR4302540.8079517/1‑94 (MQ=60)

                             TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT                                                                  <  SRR4302540.5561837/94‑1 (MQ=60)

                             TGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTT                                                                  >  SRR4302540.8990981/1‑94 (MQ=60)

                              TGTGATGGCGTTCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTT                                                                 <  SRR4302540.5450570/94‑1 (MQ=60)

                              GGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTT                                                                 <  SRR4302540.2370359/94‑1 (MQ=60)

                              GGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTT                                                                 >  SRR4302540.9186442/1‑94 (MQ=60)

                               GTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTC                                                                >  SRR4302540.5046934/1‑94 (MQ=60)

                                GGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCC                                                               <  SRR4302540.1456001/94‑1 (MQ=60)

                                 GATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCC                                                              <  SRR4302540.4381156/94‑1 (MQ=60)

                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            <  SRR4302540.8507761/94‑1 (MQ=60)

                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            <  SRR4302540.3632817/94‑1 (MQ=60)

                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            >  SRR4302540.7356588/1‑94 (MQ=60)

                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            <  SRR4302540.3113039/94‑1 (MQ=60)

                                   TGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            <  SRR4302540.3113038/94‑1 (MQ=60)

                                   TGGCGTACTGGAGATATTGCAAGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCT                                                            <  SRR4302540.2865852/94‑1 (MQ=60)

                                    GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTA                                                           <  SRR4302540.3097643/94‑1 (MQ=60)

                                       GTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCC                                                        <  SRR4302540.5059525/94‑1 (MQ=60)

                                       GTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCC                                                        >  SRR4302540.9588037/1‑94 (MQ=60)

                                       GTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCC                                                        >  SRR4302540.462862/1‑94 (MQ=60)

                                       GTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCC                                                        >  SRR4302540.6689232/1‑94 (MQ=60)

                                        TACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCA                                                       >  SRR4302540.6773736/1‑94 (MQ=60)

                                         ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA                                                      >  SRR4302540.7255146/1‑94 (MQ=60)

                                         ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA                                                      >  SRR4302540.2980139/1‑94 (MQ=60)

                                         ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAA                                                      >  SRR4302540.10074656/1‑94 (MQ=60)

                                          CTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAA                                                     <  SRR4302540.10019894/94‑1 (MQ=60)

                                          CTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAA                                                     >  SRR4302540.5980241/1‑94 (MQ=60)

                                          CTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAA                                                     >  SRR4302540.7647772/1‑94 (MQ=60)

                                          CTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAA                                                     >  SRR4302540.8403531/1‑94 (MQ=60)

                                          CTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAA                                                     <  SRR4302540.3046586/94‑1 (MQ=60)

                                           TGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAT                                                    >  SRR4302540.8128826/1‑94 (MQ=60)

                                           TGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAT                                                    >  SRR4302540.2705728/1‑94 (MQ=60)

                                           TGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAT                                                    >  SRR4302540.2667916/1‑94 (MQ=60)

                                           TGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAT                                                    <  SRR4302540.1352733/94‑1 (MQ=60)

                                           TGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAT                                                    >  SRR4302540.2667914/1‑94 (MQ=60)

                                           TGGAGATATTGCAGGATGGATTTAGTTTCCTCAGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAT                                                    <  SRR4302540.6379685/94‑1 (MQ=60)

                                           CGGAGATATGGCAGGATGGCTTTGGTATCCACCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAT                                                    <  SRR4302540.3317734/94‑1 (MQ=60)

                                            GGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTCGCCAAATC                                                   >  SRR4302540.354365/1‑94 (MQ=60)

                                            GGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATC                                                   >  SRR4302540.2002698/1‑94 (MQ=60)

                                             GAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCC                                                  <  SRR4302540.7442968/94‑1 (MQ=60)

                                              AGATATTGCAGGATGGATTTGGTTTCCTTCGTTCCGCAGACAGTTCCCACCTCGCCGGTCCTGTTGACATCTACGACTCTCCTTGCCAAATCCG                                                 >  SRR4302540.9089760/1‑94 (MQ=60)

                                              AGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCG                                                 >  SRR4302540.6747318/1‑94 (MQ=60)

                                               GATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGC                                                >  SRR4302540.703509/1‑94 (MQ=60)

                                               GATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTACCCTAGCCAAATCCGC                                                >  SRR4302540.2326298/1‑94 (MQ=60)

                                                 TATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCG                                              >  SRR4302540.5589519/1‑94 (MQ=60)

                                                 TATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCG                                              >  SRR4302540.111642/1‑94 (MQ=60)

                                                  ATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGT                                             >  SRR4302540.7130712/1‑94 (MQ=60)

                                                   TTGCAGGGTGTATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTT                                            <  SRR4302540.2001906/94‑1 (MQ=60)

                                                      CAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCA                                         >  SRR4302540.7817150/1‑94 (MQ=60)

                                                      CAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCA                                         <  SRR4302540.4648507/94‑1 (MQ=60)

                                                       AGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAA                                        >  SRR4302540.1472741/1‑94 (MQ=60)

                                                       AGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAA                                        >  SRR4302540.1472739/1‑94 (MQ=60)

                                                       AGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAA                                        <  SRR4302540.2029514/94‑1 (MQ=60)

                                                        GGGTGGATTTTGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC                                       <  SRR4302540.3586622/94‑1 (MQ=60)

                                                        GGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC                                       >  SRR4302540.2464194/1‑94 (MQ=60)

                                                        GGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC                                       >  SRR4302540.644988/1‑94 (MQ=60)

                                                        GGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAAC                                       >  SRR4302540.10070509/1‑94 (MQ=60)

                                                         GATGGATTTGTTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACC                                      <  SRR4302540.851706/94‑1 (MQ=60)

                                                         GATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACC                                      <  SRR4302540.1536538/94‑1 (MQ=60)

                                                         GATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACC                                      >  SRR4302540.7760149/1‑94 (MQ=60)

                                                         GATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACC                                      <  SRR4302540.9784257/94‑1 (MQ=60)

                                                          ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT                                     >  SRR4302540.7693823/1‑94 (MQ=60)

                                                          ATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT                                     >  SRR4302540.5273700/1‑94 (MQ=60)

                                                          ATGAATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCT                                     <  SRR4302540.4016852/94‑1 (MQ=60)

                                                            GGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCC                                   <  SRR4302540.180036/94‑1 (MQ=60)

                                                            GGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCC                                   >  SRR4302540.8650540/1‑94 (MQ=60)

                                                            GGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCC                                   <  SRR4302540.5043880/94‑1 (MQ=60)

                                                              ATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCCCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGC                                 <  SRR4302540.2956144/94‑1 (MQ=60)

                                                              ATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGC                                 <  SRR4302540.9923262/94‑1 (MQ=60)

                                                              ATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGC                                 >  SRR4302540.5977087/1‑94 (MQ=60)

                                                              ATTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGC                                 <  SRR4302540.4348135/94‑1 (MQ=60)

                                                               TTTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCA                                <  SRR4302540.903953/94‑1 (MQ=60)

                                                                TTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCAC                               <  SRR4302540.1835008/94‑1 (MQ=60)

                                                                TTGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCAC                               <  SRR4302540.9504491/94‑1 (MQ=60)

                                                                 TGGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACT                              >  SRR4302540.5665254/1‑94 (MQ=60)

                                                                  GGTTTCCTCGGTTCCGCAGACAGCTCCAACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTG                             <  SRR4302540.4711804/94‑1 (MQ=60)

                                                                  GGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTG                             >  SRR4302540.5075996/1‑94 (MQ=60)

                                                                  GGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTG                             <  SRR4302540.4711802/94‑1 (MQ=60)

                                                                  GGTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTG                             <  SRR4302540.5498840/94‑1 (MQ=60)

                                                                   GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG                            >  SRR4302540.1226994/1‑94 (MQ=60)

                                                                   GTTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGG                            <  SRR4302540.1501749/94‑1 (MQ=60)

                                                                    TTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT                           <  SRR4302540.2254261/94‑1 (MQ=60)

                                                                    TTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGcg                           >  SRR4302540.2745903/1‑92 (MQ=60)

                                                                    TTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT                           <  SRR4302540.3224730/94‑1 (MQ=60)

                                                                    TTTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGT                           >  SRR4302540.5367173/1‑94 (MQ=60)

                                                                     TTCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTG                          >  SRR4302540.3707528/1‑94 (MQ=60)

                                                                      TCCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGA                         >  SRR4302540.6840144/1‑94 (MQ=60)

                                                                       CCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAT                        >  SRR4302540.431435/1‑94 (MQ=60)

                                                                       CCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAT                        <  SRR4302540.3651209/94‑1 (MQ=60)

                                                                       CCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAT                        <  SRR4302540.4339842/94‑1 (MQ=60)

                                                                       CCTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAT                        <  SRR4302540.5259235/94‑1 (MQ=60)

                                                                       CCTCCGTTCCCCAGACAGCCCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGAT                        <  SRR4302540.6825099/94‑1 (MQ=60)

                                                                        CTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATA                       >  SRR4302540.6133993/1‑94 (MQ=60)

                                                                        CTCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATA                       >  SRR4302540.9534429/1‑94 (MQ=60)

                                                                         TCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAC                      >  SRR4302540.9155060/1‑94 (MQ=60)

                                                                         TCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAC                      <  SRR4302540.1707063/94‑1 (MQ=60)

                                                                         CCCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAC                      <  SRR4302540.149118/94‑1 (MQ=60)

                                                                          CCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTCGCCAAATCCGCCGTGTCAACCTCCGCACTGGTGATACC                     >  SRR4302540.1538237/1‑94 (MQ=60)

                                                                          CCGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACC                     >  SRR4302540.8311858/1‑94 (MQ=60)

                                                                           CGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCA                    <  SRR4302540.6170944/94‑1 (MQ=60)

                                                                           CGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCA                    >  SRR4302540.88094/1‑94 (MQ=60)

                                                                           CGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCA                    >  SRR4302540.3926341/1‑94 (MQ=60)

                                                                           CGTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCA                    >  SRR4302540.3640192/1‑94 (MQ=60)

                                                                            GTTCCGCAGACAGCTCCCACCTCTCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT                   >  SRR4302540.1860054/1‑94 (MQ=60)

                                                                            GTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT                   <  SRR4302540.4896042/94‑1 (MQ=60)

                                                                            GTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT                   >  SRR4302540.3096039/1‑94 (MQ=60)

                                                                            GTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT                   <  SRR4302540.8408992/94‑1 (MQ=60)

                                                                            GTTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAT                   >  SRR4302540.5466780/1‑94 (MQ=60)

                                                                             TTCCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATC                  <  SRR4302540.252678/94‑1 (MQ=60)

                                                                               CCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTC                >  SRR4302540.4309547/1‑94 (MQ=60)

                                                                               CCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTC                <  SRR4302540.3012621/94‑1 (MQ=60)

                                                                               CCGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTC                <  SRR4302540.1260056/94‑1 (MQ=60)

                                                                                CGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCACCTTCCGCACTGGTCATACCATCTCT               >  SRR4302540.4887367/1‑94 (MQ=60)

                                                                                CGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGCTACCATCTCT               >  SRR4302540.4712943/1‑94 (MQ=60)

                                                                                CGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCT               <  SRR4302540.213983/94‑1 (MQ=60)

                                                                                CGCAGACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCT               <  SRR4302540.3556904/94‑1 (MQ=60)

                                                                                    GACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTA           <  SRR4302540.157829/94‑1 (MQ=60)

                                                                                    GACAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTA           <  SRR4302540.7996948/94‑1 (MQ=60)

                                                                                      CAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAG         <  SRR4302540.6708147/94‑1 (MQ=60)

                                                                                      CAGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGGTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAG         >  SRR4302540.695281/1‑94 (MQ=60)

                                                                                       AGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGA        <  SRR4302540.4455509/94‑1 (MQ=60)

                                                                                       AGCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGA        <  SRR4302540.3297878/94‑1 (MQ=60)

                                                                                        GCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAT       <  SRR4302540.2236078/94‑1 (MQ=60)

                                                                                        GCTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGAT       <  SRR4302540.1143251/94‑1 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAcgctt      >  SRR4302540.2922390/1‑89 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      >  SRR4302540.9073636/1‑94 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      >  SRR4302540.5720414/1‑94 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      >  SRR4302540.2922388/1‑94 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      >  SRR4302540.2922387/1‑94 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      <  SRR4302540.9451533/94‑1 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      >  SRR4302540.4676826/1‑94 (MQ=60)

                                                                                         CTCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATT      >  SRR4302540.4676825/1‑94 (MQ=60)

                                                                                          TCCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTC     >  SRR4302540.8282992/1‑94 (MQ=60)

                                                                                           CCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCG    >  SRR4302540.3770537/1‑94 (MQ=60)

                                                                                           CCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCG    <  SRR4302540.7101901/94‑1 (MQ=60)

                                                                                           CCCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCG    >  SRR4302540.3939619/1‑94 (MQ=60)

                                                                                            CCACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGC   >  SRR4302540.8402516/1‑94 (MQ=60)

                                                                                             CACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC  <  SRR4302540.1132940/94‑1 (MQ=60)

CAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCC  >  NC_000913/3964152‑3964338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`