Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,967,307	A→G	D222G (GAC→GGC)	wzzE →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,967,307	0	A	G	100.0%	766.2 / NA	237	D222G (GAC→GGC)	wzzE	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (109/128); total (109/128)

Only 100 of 250 total aligned reads displayed.

ATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGACCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAAT  >  NC_000913/3967217‑3967396

atgatgAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGcc                                                                                         >  1:2857967/1‑93 (MQ=255)

 tgatgaGCTGAAAGGCGCATGGTCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGccg                                                                                        >  2:3995290/1‑93 (MQ=255)

  gatgaGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGccgc                                                                                       >  2:3301385/1‑93 (MQ=255)

   atgaGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGgccgcc                                                                                      <  2:2411423/93‑1 (MQ=255)

    tgaGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGccgccg                                                                                     >  1:6057059/1‑93 (MQ=255)

       gCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGAt                                                                                  <  1:771455/93‑1 (MQ=255)

          gAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGaa                                                                               >  1:5797957/1‑93 (MQ=255)

          gAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGaa                                                                               <  2:1025581/93‑1 (MQ=255)

          gAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGaa                                                                               <  2:1429875/93‑1 (MQ=255)

          gAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGaa                                                                               >  2:2260507/1‑93 (MQ=255)

           aaaGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAAc                                                                              >  2:4835717/1‑93 (MQ=255)

           aaaGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAAc                                                                              >  1:855912/1‑93 (MQ=255)

           aaaGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAAc                                                                              <  1:2919568/93‑1 (MQ=255)

            aaGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACa                                                                             <  2:193601/93‑1 (MQ=255)

            aaGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACa                                                                             <  2:148384/93‑1 (MQ=255)

            aaGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACa                                                                             <  2:605137/93‑1 (MQ=255)

             aGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAg                                                                            <  2:5031466/93‑1 (MQ=255)

              ggCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGCAGCGTCAGGAAGCGGTGGCGAAAGCCAACTTCGGCCGCCGGATGAACAGc                                                                           >  2:5446763/1‑93 (MQ=255)

              ggCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGc                                                                           <  1:4862507/93‑1 (MQ=255)

              ggCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGc                                                                           >  1:5538950/1‑93 (MQ=255)

               gcgcATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCa                                                                          <  2:3829189/93‑1 (MQ=255)

                cgcATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCAt                                                                         <  1:5297698/93‑1 (MQ=255)

                 gcATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCAtt                                                                        >  2:3032923/1‑93 (MQ=255)

                  cATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTg                                                                       >  2:2463750/1‑93 (MQ=255)

                    tGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAg                                                                     >  1:5013868/1‑93 (MQ=255)

                    tGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAg                                                                     >  2:3636246/1‑93 (MQ=255)

                     gggCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGc                                                                    >  1:1364354/1‑93 (MQ=255)

                     gggCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGc                                                                    <  1:1528379/93‑1 (MQ=255)

                      ggcggcGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCa                                                                   <  1:4068378/93‑1 (MQ=255)

                      ggcggcGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCa                                                                   >  1:4455733/1‑93 (MQ=255)

                      ggcggcGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCa                                                                   >  2:5529869/1‑93 (MQ=255)

                      ggcggcGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCa                                                                   >  2:3772353/1‑93 (MQ=255)

                       gcggcgCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAg                                                                  <  2:4029543/93‑1 (MQ=255)

                       gcggcgCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAg                                                                  <  1:4970108/93‑1 (MQ=255)

                         ggcgCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGgc                                                                <  1:599705/93‑1 (MQ=255)

                             cgTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTg                                                            >  2:2371915/1‑93 (MQ=255)

                              gTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGa                                                           <  1:1114774/93‑1 (MQ=255)

                                aCCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGaaa                                                         >  1:3790766/1‑93 (MQ=255)

                                  cATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAAt                                                       <  1:1584997/93‑1 (MQ=255)

                                   aTCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAAtt                                                      <  2:357134/93‑1 (MQ=255)

                                    tCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTg                                                     <  2:490761/93‑1 (MQ=255)

                                     ccAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGc                                                    >  2:5764030/1‑93 (MQ=255)

                                     ccAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGc                                                    <  1:585432/93‑1 (MQ=255)

                                      cAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCt                                                   <  1:2056195/93‑1 (MQ=255)

                                      cAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCt                                                   >  1:4563134/1‑93 (MQ=255)

                                      cAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCt                                                   <  1:1755033/93‑1 (MQ=255)

                                       aGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTg                                                  >  2:4526106/1‑93 (MQ=255)

                                        gATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTgg                                                 >  1:1859018/1‑92 (MQ=255)

                                         aTGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGag                                                <  2:3900705/93‑1 (MQ=255)

                                           gAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGagca                                              <  1:4273560/93‑1 (MQ=255)

                                           gAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGagca                                              <  2:1916046/93‑1 (MQ=255)

                                            aaaGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGagcag                                             >  1:1343556/1‑93 (MQ=255)

                                                 tCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCataa                                        <  2:6129469/93‑1 (MQ=255)

                                                 tCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCataa                                        <  2:2709614/93‑1 (MQ=255)

                                                  cAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCataat                                       <  1:6201837/93‑1 (MQ=255)

                                                   aGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCataata                                      <  2:1257889/93‑1 (MQ=255)

                                                    ggTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAatat                                     >  2:5516619/1‑93 (MQ=255)

                                                    ggTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAatat                                     <  2:5213383/93‑1 (MQ=255)

                                                    ggTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAatat                                     >  2:5910191/1‑93 (MQ=255)

                                                       gAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTc                                  <  1:341685/93‑1 (MQ=255)

                                                        aaGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTcg                                 >  2:3702143/1‑93 (MQ=255)

                                                         aGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTcgc                                <  1:2675920/93‑1 (MQ=255)

                                                         aGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTcgc                                <  1:2413227/93‑1 (MQ=255)

                                                            gTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCa                             >  1:328023/1‑93 (MQ=255)

                                                             tCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAg                            >  1:2701069/1‑93 (MQ=255)

                                                             tCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAg                            <  1:2210244/93‑1 (MQ=255)

                                                             tCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAg                            >  2:3179757/1‑93 (MQ=255)

                                                             tCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAg                            <  2:2796840/93‑1 (MQ=255)

                                                              cAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAgc                           <  1:3696577/93‑2 (MQ=255)

                                                              cAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGt                           <  2:2178577/93‑1 (MQ=255)

                                                              cAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGt                           <  1:3530529/93‑1 (MQ=255)

                                                               aGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTg                          >  2:6283833/1‑93 (MQ=255)

                                                               aGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTg                          <  1:4787654/93‑1 (MQ=255)

                                                                 gAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCg                        >  2:5133219/1‑93 (MQ=255)

                                                                   agagGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGAc                      <  1:3028470/93‑1 (MQ=255)

                                                                    gagTTGGCGAAAGCATTCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCCGTGCGACa                     <  2:2086460/93‑1 (MQ=255)

                                                                    gagGTGGCAAAAGCCATCTCCGTCCGCCGGATGAACAGCATTGATCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACa                     <  2:1809565/93‑1 (MQ=255)

                                                                      ggTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGa                   <  1:2367533/93‑1 (MQ=255)

                                                                       gTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGAt                  <  1:2836432/93‑1 (MQ=255)

                                                                       gTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGAt                  >  1:6275083/1‑93 (MQ=255)

                                                                           cGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTAc              <  1:5136074/93‑1 (MQ=255)

                                                                            gAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTAcc             <  2:5671365/93‑1 (MQ=255)

                                                                            gAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTAcc             >  1:3841009/1‑93 (MQ=255)

                                                                              aaGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTg           >  2:2106262/1‑93 (MQ=255)

                                                                                gCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGcc         <  1:2282447/93‑1 (MQ=255)

                                                                                 ccATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCg        <  2:756147/93‑1 (MQ=255)

                                                                                 ccATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCg        <  1:3976223/93‑1 (MQ=255)

                                                                                  cATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGa       >  2:3860257/1‑93 (MQ=255)

                                                                                  cATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGa       <  1:351500/93‑1 (MQ=255)

                                                                                   aTCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAg      <  2:4251388/93‑1 (MQ=255)

                                                                                   aTCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAg      <  1:4689829/93‑1 (MQ=255)

                                                                                   aTCCACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAg      >  2:4640952/1‑93 (MQ=255)

                                                                                    tCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAgg     >  2:4157338/1‑93 (MQ=255)

                                                                                    tCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAgg     >  2:1657096/1‑93 (MQ=255)

                                                                                    tCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAgg     >  1:2452567/1‑93 (MQ=255)

                                                                                     cTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGa    <  2:4657995/93‑1 (MQ=255)

                                                                                     cTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGa    <  2:4454196/93‑1 (MQ=255)

                                                                                      tACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGaa   <  2:2973475/93‑1 (MQ=255)

                                                                                      tACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGaa   <  1:1239436/93‑1 (MQ=255)

                                                                                       aCGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAAt  >  2:632146/1‑93 (MQ=255)

ATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGACCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAAT  >  NC_000913/3967217‑3967396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGAATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGACCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATTACC  >  NC_000913/3967214‑3967400

TGAATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGG                                                                                               <  SRR4302533.3035849/94‑1 (MQ=60)

 GAATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGC                                                                                              >  SRR4302533.2609829/1‑94 (MQ=60)

 GAATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGC                                                                                              <  SRR4302533.75789/94‑1 (MQ=60)

 GAATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGC                                                                                              >  SRR4302533.3437532/1‑94 (MQ=60)

  AATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCC                                                                                             <  SRR4302533.4159578/94‑1 (MQ=60)

  AATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCC                                                                                             >  SRR4302533.2875551/1‑94 (MQ=60)

   ATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCG                                                                                            >  SRR4302533.4875221/1‑94 (MQ=60)

     GATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCC                                                                                          <  SRR4302533.2501336/94‑1 (MQ=60)

     GATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCC                                                                                          <  SRR4302533.3787682/94‑1 (MQ=60)

      ATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCG                                                                                         >  SRR4302533.6093734/1‑94 (MQ=60)

         AGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGAT                                                                                      <  SRR4302533.6156689/94‑1 (MQ=60)

          GCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATG                                                                                     <  SRR4302533.775994/94‑1 (MQ=60)

            TGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAA                                                                                   >  SRR4302533.79903/1‑94 (MQ=60)

            TGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAA                                                                                   >  SRR4302533.5832984/1‑94 (MQ=60)

            TGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAA                                                                                   >  SRR4302533.4013820/1‑94 (MQ=60)

             GAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAAC                                                                                  >  SRR4302533.860927/1‑94 (MQ=60)

             GAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAAA                                                                                  >  SRR4302533.3552025/1‑94 (MQ=60)

              AAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACA                                                                                 <  SRR4302533.2937456/94‑1 (MQ=60)

              AAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACA                                                                                 >  SRR4302533.5000738/1‑94 (MQ=60)

                AGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGC                                                                               >  SRR4302533.5572396/1‑94 (MQ=60)

                AGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGC                                                                               <  SRR4302533.3588503/94‑1 (MQ=60)

                 GGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCA                                                                              <  SRR4302533.4891978/94‑1 (MQ=60)

                  GCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCAT                                                                             <  SRR4302533.5566746/94‑1 (MQ=60)

                   CGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATT                                                                            <  SRR4302533.5329430/94‑1 (MQ=60)

                    GCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTG                                                                           >  SRR4302533.2715958/1‑94 (MQ=60)

                    GCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTG                                                                           <  SRR4302533.2428467/94‑1 (MQ=60)

                      ATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAG                                                                         >  SRR4302533.4826412/1‑94 (MQ=60)

                      ATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAG                                                                         <  SRR4302533.5991680/94‑1 (MQ=60)

                      ATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAG                                                                         >  SRR4302533.5044244/1‑94 (MQ=60)

                       TGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGC                                                                        >  SRR4302533.1372551/1‑94 (MQ=60)

                        GGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCA                                                                       <  SRR4302533.1537575/94‑1 (MQ=60)

                        GGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCA                                                                       >  SRR4302533.4482676/1‑94 (MQ=60)

                         tctcggcattcctgctgaaccgctcttccgatctgctgtatAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAG                                                                      <  SRR4302533.2270751/53‑1 (MQ=60)

                         GGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAG                                                                      <  SRR4302533.4093144/94‑1 (MQ=60)

                         GGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAG                                                                      <  SRR4302533.528345/94‑1 (MQ=60)

                          GCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGG                                                                     <  SRR4302533.5000242/94‑1 (MQ=60)

                          GCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGG                                                                     <  SRR4302533.135705/94‑1 (MQ=60)

                           AGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGC                                                                    <  SRR4302533.5000623/94‑1 (MQ=60)

                            GGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCG                                                                   <  SRR4302533.603234/94‑1 (MQ=60)

                            GGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCG                                                                   >  SRR4302533.1590952/1‑94 (MQ=60)

                                 GTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAA                                                              <  SRR4302533.1121384/94‑1 (MQ=60)

                                 GTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAA                                                              >  SRR4302533.3989708/1‑94 (MQ=60)

                                  TACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAA                                                             >  SRR4302533.6141013/1‑94 (MQ=60)

                                  TACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAA                                                             >  SRR4302533.3451627/1‑94 (MQ=60)

                                  TACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAA                                                             >  SRR4302533.3813977/1‑94 (MQ=60)

                                  TACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAA                                                             >  SRR4302533.4194193/1‑94 (MQ=60)

                                  TACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAA                                                             >  SRR4302533.1265410/1‑94 (MQ=60)

                                   ACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAA                                                            >  SRR4302533.2384389/1‑94 (MQ=60)

                                    CCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAAT                                                           <  SRR4302533.2970931/94‑1 (MQ=60)

                                    CCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAAT                                                           >  SRR4302533.3054443/1‑94 (MQ=60)

                                    CCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAAT                                                           >  SRR4302533.3315528/1‑94 (MQ=60)

                                     CATCGAGATTAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATT                                                          <  SRR4302533.1463879/94‑1 (MQ=60)

                                     CATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATT                                                          <  SRR4302533.1594547/94‑1 (MQ=60)

                                       TCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGC                                                        <  SRR4302533.4689711/94‑1 (MQ=60)

                                        CCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCT                                                       <  SRR4302533.588883/94‑1 (MQ=60)

                                        CCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCT                                                       >  SRR4302533.4590804/1‑94 (MQ=60)

                                         CAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTG                                                      >  SRR4302533.4580420/1‑94 (MQ=60)

                                         CAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTG                                                      <  SRR4302533.2068879/94‑1 (MQ=60)

                                         CAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTG                                                      <  SRR4302533.1765723/94‑1 (MQ=60)

                                         CAGATAAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTG                                                      <  SRR4302533.2575172/94‑1 (MQ=60)

                                          AGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGG                                                     >  SRR4302533.1870353/1‑94 (MQ=60)

                                          AGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGA                                                     >  SRR4302533.2394758/1‑94 (MQ=60)

                                             TGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCA                                                  >  SRR4302533.4428168/1‑94 (MQ=60)

                                             TGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCA                                                  >  SRR4302533.2142926/1‑94 (MQ=60)

                                             TGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCA                                                  <  SRR4302533.2254704/94‑1 (MQ=60)

                                              GAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAG                                                 <  SRR4302533.2767862/94‑1 (MQ=60)

                                              GAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAG                                                 <  SRR4302533.1860340/94‑1 (MQ=60)

                                              GAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAG                                                 >  SRR4302533.1351642/1‑94 (MQ=60)

                                              GAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAG                                                 <  SRR4302533.4299275/94‑1 (MQ=60)

                                                AAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCA                                               <  SRR4302533.44839/94‑1 (MQ=60)

                                                AAGCTCAGGTGAAGCATCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCA                                               <  SRR4302533.5677361/94‑1 (MQ=60)

                                                 AGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCAT                                              >  SRR4302533.629114/1‑94 (MQ=60)

                                                  GCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATA                                             >  SRR4302533.4724475/1‑94 (MQ=60)

                                                  GCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATA                                             <  SRR4302533.172324/94‑1 (MQ=60)

                                                  GCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATA                                             >  SRR4302533.345730/1‑94 (MQ=60)

                                                   CTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAA                                            >  SRR4302533.2856990/1‑94 (MQ=60)

                                                    TCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAAT                                           >  SRR4302533.995863/1‑94 (MQ=60)

                                                     CAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATA                                          <  SRR4302533.236577/94‑1 (MQ=60)

                                                     CAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATA                                          <  SRR4302533.6239034/94‑1 (MQ=60)

                                                       GGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATT                                        >  SRR4302533.408723/1‑94 (MQ=60)

                                                         TGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTC                                      >  SRR4302533.5264787/1‑94 (MQ=60)

                                                          GAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCG                                     >  SRR4302533.5955528/1‑94 (MQ=60)

                                                          GAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCG                                     <  SRR4302533.343771/94‑1 (MQ=60)

                                                          GAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCG                                     <  SRR4302533.1345267/94‑1 (MQ=60)

                                                          GAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCG                                     <  SRR4302533.5855256/94‑1 (MQ=60)

                                                          GAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCG                                     >  SRR4302533.4960735/1‑94 (MQ=60)

                                                           AAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGC                                    >  SRR4302533.5045046/1‑94 (MQ=60)

                                                            AGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCG                                   <  SRR4302533.2692332/94‑1 (MQ=60)

                                                            AGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCG                                   <  SRR4302533.2428136/94‑1 (MQ=60)

                                                            AGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCG                                   >  SRR4302533.3627642/1‑94 (MQ=60)

                                                              CGTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCA                                 >  SRR4302533.330022/1‑94 (MQ=60)

                                                               GTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAG                                <  SRR4302533.383477/94‑1 (MQ=60)

                                                               GTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAG                                <  SRR4302533.279087/94‑1 (MQ=60)

                                                               GTCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAG                                >  SRR4302533.2717640/1‑94 (MQ=60)

                                                               GTCAGGAAGAGGTGCGGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCACGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAG                                <  SRR4302533.3862300/94‑1 (MQ=60)

                                                                TCAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGT                               <  SRR4302533.2223875/94‑1 (MQ=60)

                                                                 CAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTG                              <  SRR4302533.3552289/94‑1 (MQ=60)

                                                                 CAGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGCG                              <  SRR4302533.3719284/94‑1 (MQ=60)

                                                                  AGGAAGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGC                             <  SRR4302533.4816650/94‑1 (MQ=60)

                                                                      AGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACA                         <  SRR4302533.3047003/94‑1 (MQ=60)

                                                                      AGAGGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACA                         <  SRR4302533.3292329/94‑1 (MQ=60)

                                                                         GGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGAT                      <  SRR4302533.4682210/94‑1 (MQ=60)

                                                                         GGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGAT                      <  SRR4302533.2933246/94‑1 (MQ=60)

                                                                         GGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGAT                      <  SRR4302533.2382180/94‑1 (MQ=60)

                                                                         GGTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGAT                      >  SRR4302533.6312557/1‑94 (MQ=60)

                                                                          GTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATG                     <  SRR4302533.1644182/94‑1 (MQ=60)

                                                                          GTGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATG                     <  SRR4302533.2853889/94‑1 (MQ=60)

                                                                           TGGCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGT                    <  SRR4302533.1892461/94‑1 (MQ=60)

                                                                             GCGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTAC                  <  SRR4302533.6058480/94‑1 (MQ=60)

                                                                              CGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACC                 <  SRR4302533.1942963/94‑1 (MQ=60)

                                                                              CGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACC                 <  SRR4302533.5167107/94‑1 (MQ=60)

                                                                              CGAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACC                 >  SRR4302533.3864473/1‑94 (MQ=60)

                                                                               GAAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCT                <  SRR4302533.1380092/94‑1 (MQ=60)

                                                                                AAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTG               <  SRR4302533.2904065/94‑1 (MQ=60)

                                                                                AAAGCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTG               <  SRR4302533.744191/94‑1 (MQ=60)

                                                                                   GCCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCG            <  SRR4302533.2296576/94‑1 (MQ=60)

                                                                                    CCATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGA           <  SRR4302533.4000430/94‑1 (MQ=60)

                                                                                     CATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAG          <  SRR4302533.353644/94‑1 (MQ=60)

                                                                                      ATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGG         <  SRR4302533.4718261/94‑1 (MQ=60)

                                                                                      ATCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGG         >  SRR4302533.2467703/1‑94 (MQ=60)

                                                                                       TCTACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGA        <  SRR4302533.642457/94‑1 (MQ=60)

                                                                                         TACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAAT      <  SRR4302533.1246842/94‑1 (MQ=60)

                                                                                          ACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATT     >  SRR4302533.1853446/1‑94 (MQ=60)

                                                                                          ACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATT     >  SRR4302533.2525554/1‑94 (MQ=60)

                                                                                          ACGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATT     <  SRR4302533.1175344/94‑1 (MQ=60)

                                                                                           CGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATTA    <  SRR4302533.1693456/94‑1 (MQ=60)

                                                                                           CGGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATTA    <  SRR4302533.1544640/94‑1 (MQ=60)

                                                                                            GGCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATTAC   >  SRR4302533.2305273/1‑94 (MQ=60)

                                                                                             GCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATTACC  <  SRR4302533.4278919/94‑1 (MQ=60)

                                                                                             GCCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATTACC  <  SRR4302533.4488104/94‑1 (MQ=60)

TGAATGATGAGCTGAAAGGCGCATGGGCGGCGCGTACCATCCAGATGAAAGCTCAGGTGAAGCGTCAGGAAGAGGTGGCGAAAGCCATCTACGACCGCCGGATGAACAGCATTGAGCAGGCGCTGAAAATTGCTGAGCAGCATAATATTTCGCGCAGTGCGACAGATGTACCTGCCGAGGAATTACC  >  NC_000913/3967214‑3967400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`