Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,391 |
+C |
coding (474/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,391 | 1 | . | C | 100.0%
| 260.9
/ NA
| 83 | K158N (AAG→AAC) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (34/49); total (34/49) |
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAA‑G‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008300‑4008458
|
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑g < 1:5707178/93‑1 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAAAAGCCCTGCGCTGGAA‑gc > 1:773125/1‑92 (MQ=255)
cGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcg < 2:4574996/93‑3 (MQ=255)
cGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcg < 1:3195704/93‑3 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTCAAAAGGCCATGCGCTGGAA‑gcgg > 1:4813315/1‑90 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 1:2019961/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 1:4623304/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 2:3083575/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 2:3097571/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 2:3282794/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAAAAGCCATGCGCTGGAA‑gcgg > 1:4041485/1‑90 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑gcggt < 2:3738063/93‑5 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a < 2:722109/93‑1 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a > 1:882407/1‑93 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a > 2:2003960/1‑93 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAAAGGGCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a > 2:4689360/1‑93 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aa < 2:2103880/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aa < 2:4357872/93‑1 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:4328059/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:219070/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:5143571/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga > 1:4242722/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:3925526/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga > 1:3268770/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCACTGGCTGGAAGG‑GGTGGCG‑‑‑‑aaaa > 1:1410130/1‑91 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aagaa > 1:2474435/1‑90 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAAGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aagaa > 2:2923090/1‑90 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aagaaa < 2:2759649/93‑5 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aagaaa < 1:3617388/93‑5 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt > 2:5367497/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt < 1:3067422/93‑1 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt > 2:2690426/1‑92 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt > 2:2607369/1‑92 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt < 1:3423220/93‑2 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 2:4708075/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg < 1:1051706/93‑3 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 2:1156237/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:5995372/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:5951006/1‑91 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttgg > 2:630739/1‑90 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 2:349093/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 2:5970655/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 1:100493/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAAGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa > 2:6045798/1‑93 (MQ=255)
ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 2:2148939/93‑1 (MQ=255)
ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑AAGAAACCG‑GGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 2:1686766/93‑1 (MQ=255)
gcgggcggCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg < 2:2236559/93‑1 (MQ=255)
gcgggcggCGTGTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg < 2:790947/93‑1 (MQ=255)
cgggcggCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGa < 1:5478423/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 1:2635131/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 2:3445771/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac > 1:3993000/1‑93 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 2:2772791/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 1:4957056/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 2:331868/93‑1 (MQ=255)
gcggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg < 1:2957114/93‑1 (MQ=255)
gcggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg > 1:4814006/1‑93 (MQ=255)
cggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga < 1:2546223/93‑1 (MQ=255)
cggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga < 2:2166732/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAacgac > 2:5773184/1‑93 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 2:4279944/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac > 2:3119511/1‑93 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 2:4498313/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac > 2:5281397/1‑93 (MQ=255)
gcgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg > 2:4300379/1‑93 (MQ=255)
cgTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc > 2:5938791/1‑93 (MQ=255)
gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc < 1:4418546/93‑1 (MQ=255)
gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc < 2:4808827/93‑1 (MQ=255)
ttcaaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa < 2:2580522/89‑1 (MQ=255)
ttcaaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa > 2:5932837/5‑93 (MQ=255)
ttcaaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa > 1:6270373/5‑93 (MQ=255)
tcaaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaa > 2:476989/4‑93 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 2:723500/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 2:808001/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:3434171/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:995345/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:5766444/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:4553544/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa > 1:4825533/3‑93 (MQ=255)
caaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa > 1:4825534/3‑93 (MQ=255)
aaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 2:4130459/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 1:5825289/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 2:3678743/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt < 2:2946514/92‑1 (MQ=255)
aaaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 2:1526869/2‑93 (MQ=255)
aaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGCAATg > 2:2085646/1‑93 (MQ=255)
aaaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATg > 1:290367/1‑93 (MQ=255)
aaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc < 1:6192030/93‑1 (MQ=255)
aaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc < 1:2935716/93‑1 (MQ=255)
aaGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc > 2:3848605/1‑93 (MQ=255)
aGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:1197056/93‑1 (MQ=255)
aGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt > 2:6045723/1‑93 (MQ=255)
aGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 2:193059/93‑1 (MQ=255)
aGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:3735094/93‑1 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 2:2269624/93‑1 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:5385678/93‑1 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:241840/93‑1 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:4092752/93‑1 (MQ=255)
|
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAA‑G‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008300‑4008458
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTC > NC_000913/4008299‑4008460
|
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAG < SRR4302533.931646/94‑1 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAG < SRR4302533.873300/94‑1 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAG < SRR4302533.2490125/94‑1 (MQ=60)
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAG‑C < SRR4302533.5741651/94‑1 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTCAAAAGGCCATGCGCTGGAAGcgg > SRR4302533.4842487/1‑91 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcgg < SRR4302533.3215368/94‑4 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAAAAGCCATGCGCTGGAAGcgg > SRR4302533.4066083/1‑91 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggt < SRR4302533.4651328/94‑5 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggt < SRR4302533.2032402/94‑5 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtg > SRR4302533.3893437/1‑89 (MQ=60)
TGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtgg < SRR4302533.4178070/94‑7 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggc < SRR4302533.2958628/94‑8 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggc > SRR4302533.2294013/1‑87 (MQ=60)
GGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcg < SRR4302533.3340360/94‑9 (MQ=60)
GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑A > SRR4302533.887590/1‑94 (MQ=60)
GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑A < SRR4302533.5337889/94‑1 (MQ=60)
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcgggggggaag > SRR4302533.1620270/1‑83 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga > SRR4302533.3288937/1‑82 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga > SRR4302533.4268339/1‑82 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCGAAAGGCCATGCGCTGGAAGcgggggcggaga > SRR4302533.5631381/1‑82 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcggagaa > SRR4302533.1150890/1‑81 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaa > SRR4302533.2489694/1‑81 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTCAAAAAGCCATGCGCTGGAAGcggtggcgaagaaac > SRR4302533.4661568/1‑79 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaac < SRR4302533.3639640/94‑16 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaac > SRR4302533.4570836/1‑79 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaact > SRR4302533.1959643/1‑78 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTCAAAAGGCCATGCGCTGGAAG‑Ggggggggaagcaaccg > SRR4302533.4074910/1‑78 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg > SRR4302533.5196848/1‑76 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.247755/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.1419427/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.2181474/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.4252206/94‑19 (MQ=60)
TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggg < SRR4302533.1253243/94‑20 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggc > SRR4302533.2600926/1‑74 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaactgggc > SRR4302533.2040920/1‑74 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct > SRR4302533.4416745/1‑73 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct > SRR4302533.4062766/1‑73 (MQ=60)
CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagc > SRR4302533.2545756/1‑68 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcc < SRR4302533.1574414/94‑28 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcc > SRR4302533.4012320/1‑67 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaaagcc > SRR4302533.214174/1‑67 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302533.6253719/94‑29 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302533.4606144/94‑29 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct > SRR4302533.1757581/1‑66 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTGCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302533.2381622/94‑29 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg > SRR4302533.47652/1‑65 (MQ=60)
TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302533.2601426/1‑64 (MQ=60)
TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302533.3195947/1‑64 (MQ=60)
TTCTCTACCTTAACCTGTCCGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga < SRR4302533.2760742/94‑31 (MQ=60)
TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaa < SRR4302533.5359189/94‑32 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302533.5244329/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaaatgggctacagcctgaag > SRR4302533.2848517/1‑62 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaagg < SRR4302533.4555648/94‑34 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302533.4602454/1‑58 (MQ=60)
CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattg < SRR4302533.272655/94‑38 (MQ=60)
CTTAGCCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302533.674543/94‑39 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCTCTGGAAGcggtggcgaagaaactggtctacagcctgaaggattgt > SRR4302533.3921045/1‑56 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302533.1374313/94‑39 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302533.4840798/94‑40 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagactgaaggattgtattg > SRR4302533.7657/1‑52 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302533.2486450/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302533.4946983/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302533.3164330/94‑45 (MQ=60)
TGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgt > SRR4302533.3979667/1‑49 (MQ=60)
TCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302533.3086262/94‑48 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg < SRR4302533.3444365/94‑49 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302533.6031684/1‑46 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302533.5987001/1‑46 (MQ=60)
TGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtacagcctgaaggattgtattgcgtttgg > SRR4302533.1478632/1‑45 (MQ=60)
TGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg < SRR4302533.1057898/94‑50 (MQ=60)
AGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgac < SRR4302533.714606/94‑54 (MQ=60)
GTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacg < SRR4302533.2403475/94‑55 (MQ=60)
tcaAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA > SRR4302533.4854775/4‑94 (MQ=16)
tcaAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA > SRR4302533.4854776/4‑94 (MQ=16)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.3455385/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.4581160/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.1001159/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302533.5860484/3‑94 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.5801257/92‑1 (MQ=18)
A‑AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302533.292135/1‑94 (MQ=19)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302533.2953665/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302533.6229189/94‑1 (MQ=21)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302533.1204246/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302533.49854/1‑94 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302533.2757655/1‑94 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302533.3758008/94‑1 (MQ=23)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT < SRR4302533.243338/94‑1 (MQ=25)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT < SRR4302533.5418036/94‑1 (MQ=25)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT < SRR4302533.4117665/94‑1 (MQ=25)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.1174613/94‑1 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.5623384/94‑1 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC > SRR4302533.39867/1‑94 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.20499/94‑1 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.3654174/94‑1 (MQ=26)
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GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTC > NC_000913/4008299‑4008460
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
