Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,990	C→T	R109C (CGT→TGT)	yigM →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,990	0	C	T	100.0%	973.3 / NA	256	R109C (CGT→TGT)	yigM	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (131/125); total (131/125)

Only 100 of 264 total aligned reads displayed.

TATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG  >  NC_000913/4008900‑4009079

tATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGt                                                                                         >  2:2286974/1‑93 (MQ=255)

 ttctcTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTc                                                                                        <  1:4453442/92‑1 (MQ=255)

 aTCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTc                                                                                        <  2:5301033/93‑1 (MQ=255)

 aTCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTc                                                                                        <  1:548013/93‑1 (MQ=255)

 aTCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTc                                                                                        <  1:2900970/93‑1 (MQ=255)

 aTCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTc                                                                                        <  1:3727949/93‑1 (MQ=255)

  tctcTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCt                                                                                       <  1:3977365/93‑1 (MQ=255)

  tctcTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCt                                                                                       >  2:2099029/1‑93 (MQ=255)

    tctACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgc                                                                                     >  2:1036716/1‑93 (MQ=255)

    tctACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgc                                                                                     >  1:700924/1‑93 (MQ=255)

    tctACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgc                                                                                     <  2:4072681/93‑1 (MQ=255)

     ctACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgcg                                                                                    >  2:4729243/1‑93 (MQ=255)

      tACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgcgc                                                                                   >  2:1169935/1‑93 (MQ=255)

      tACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgcgc                                                                                   <  1:346640/93‑1 (MQ=255)

      tACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTgcgc                                                                                   >  2:2642321/1‑93 (MQ=255)

       aCCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTCAGCGCTGTCTgcgcg                                                                                  >  1:435449/1‑92 (MQ=255)

        ccTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTg                                                                                 >  1:1251333/1‑93 (MQ=255)

         cTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgg                                                                                >  1:4859171/1‑93 (MQ=255)

         cTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgg                                                                                >  2:3369712/1‑93 (MQ=255)

         cTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgg                                                                                <  1:2144394/93‑1 (MQ=255)

         cTGACGGTGTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgg                                                                                <  2:190246/93‑1 (MQ=255)

           gACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTgggg                                                                              >  2:4619138/1‑93 (MQ=255)

            aCGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGc                                                                             <  1:2300709/93‑1 (MQ=255)

            aCGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGc                                                                             >  1:3617843/1‑93 (MQ=255)

            aCGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGc                                                                             >  1:957734/1‑93 (MQ=255)

             cGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCt                                                                            <  2:6006764/93‑1 (MQ=255)

              ggTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTa                                                                           <  2:3936265/93‑1 (MQ=255)

              ggTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTa                                                                           >  2:132026/1‑93 (MQ=255)

               gTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTAt                                                                          <  2:2809598/93‑1 (MQ=255)

                    cGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCtt                                                                     <  1:3415977/93‑1 (MQ=255)

                     gAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCttt                                                                    <  2:1050502/93‑1 (MQ=255)

                     gAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCttt                                                                    >  1:4761904/1‑93 (MQ=255)

                     gAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCttt                                                                    >  2:1857405/1‑93 (MQ=255)

                      aGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTa                                                                   <  1:5730441/93‑1 (MQ=255)

                      aGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTa                                                                   <  2:3827931/93‑1 (MQ=255)

                       gctgctgctGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAg                                                                  >  2:3877302/1‑93 (MQ=255)

                        ctgctgctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAgc                                                                 <  1:1724528/93‑1 (MQ=255)

                        ctgctgctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAgc                                                                 >  2:2463359/1‑93 (MQ=255)

                          gctgctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAgcgc                                                               >  2:4418933/1‑93 (MQ=255)

                            tgctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCt                                                             <  1:1478703/93‑1 (MQ=255)

                             gctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCtt                                                            <  2:3565188/93‑1 (MQ=255)

                              ctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTg                                                           >  1:3693880/1‑93 (MQ=255)

                              ctgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTg                                                           <  1:1494822/93‑1 (MQ=255)

                               tgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGc                                                          >  2:1949346/1‑93 (MQ=255)

                               tgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGc                                                          >  2:3472234/1‑93 (MQ=255)

                               tgTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGc                                                          <  2:5991239/93‑1 (MQ=255)

                                gTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCt                                                         <  1:2602397/93‑1 (MQ=255)

                                    aCCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCg                                                     >  1:5158962/1‑93 (MQ=255)

                                     ccGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCgg                                                    <  2:5499291/93‑1 (MQ=255)

                                      cGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGt                                                   >  1:600283/1‑93 (MQ=255)

                                        tGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGa                                                 <  2:5213705/93‑1 (MQ=255)

                                         gCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGAt                                                >  2:1513972/1‑93 (MQ=255)

                                            gACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTgg                                             <  1:4647365/93‑1 (MQ=255)

                                            gACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTgg                                             <  1:386326/93‑1 (MQ=255)

                                             aCGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGt                                            <  2:2574224/93‑1 (MQ=255)

                                             aCGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGt                                            <  2:3037307/93‑1 (MQ=255)

                                                ccgcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGcc                                         >  1:1008713/1‑93 (MQ=255)

                                                ccgcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGcc                                         >  1:3171112/1‑93 (MQ=255)

                                                  gcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCgg                                       <  2:5705811/93‑1 (MQ=255)

                                                  gcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCgg                                       >  2:1838185/1‑93 (MQ=255)

                                                  gcTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCgg                                       >  1:502780/1‑93 (MQ=255)

                                                   ctctACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCggg                                      <  1:1913945/93‑1 (MQ=255)

                                                     ctACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGat                                    >  1:1352140/1‑93 (MQ=255)

                                                       aCATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGatta                                  <  2:320526/93‑1 (MQ=255)

                                                        cATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGattat                                 >  1:3102701/1‑93 (MQ=255)

                                                        cATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGattat                                 >  1:2211547/1‑93 (MQ=255)

                                                         aTCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGattatt                                <  2:5109282/93‑1 (MQ=255)

                                                          tCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTc                               >  1:5270042/1‑93 (MQ=255)

                                                           cACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCg                              <  2:5636235/93‑1 (MQ=255)

                                                           cACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCg                              >  1:4187729/1‑93 (MQ=255)

                                                            aCGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGc                             >  2:4713840/1‑93 (MQ=255)

                                                             cGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCt                            >  2:4310673/1‑93 (MQ=255)

                                                              gCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTa                           >  2:4986339/1‑93 (MQ=255)

                                                              gCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTa                           >  1:581039/1‑93 (MQ=255)

                                                               cTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGGTTATTCGCTAt                          >  1:5389192/1‑93 (MQ=255)

                                                               cTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGGGATTGGTGCCGGGATTATTCGCTAt                          >  1:2979125/1‑93 (MQ=255)

                                                                tGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATg                         >  2:6073557/1‑93 (MQ=255)

                                                                tGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATg                         >  1:1612532/1‑93 (MQ=255)

                                                                tGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATg                         >  2:2223133/1‑93 (MQ=255)

                                                                 gATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGa                        <  1:2908004/93‑1 (MQ=255)

                                                                 gATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGa                        >  1:2100270/1‑93 (MQ=255)

                                                                 gATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGa                        <  2:4147438/93‑1 (MQ=255)

                                                                 gATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGa                        <  1:2498533/93‑1 (MQ=255)

                                                                  aTTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAt                       >  1:1319025/1‑93 (MQ=255)

                                                                    ttATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCa                     <  1:4590736/93‑1 (MQ=255)

                                                                    ttATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCa                     <  1:4902633/93‑1 (MQ=255)

                                                                     tATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAg                    <  1:4556158/93‑1 (MQ=255)

                                                                      aTGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAgg                   <  1:327636/93‑1 (MQ=255)

                                                                       tGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGt                  >  2:1671163/1‑93 (MQ=255)

                                                                       tGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGt                  <  2:2870704/93‑1 (MQ=255)

                                                                          catcatGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCAc               <  2:694930/93‑1 (MQ=255)

                                                                           atcatGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCAcc              >  2:3144259/1‑93 (MQ=255)

                                                                            tcatGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCg             >  2:908707/1‑93 (MQ=255)

                                                                             catGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGa            >  1:590405/1‑93 (MQ=255)

                                                                                 aGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCAt        <  2:4809864/93‑1 (MQ=255)

                                                                                   tAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCAttt      >  2:811537/1‑93 (MQ=255)

                                                                                    aaGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTc     >  2:361218/1‑93 (MQ=255)

                                                                                    aaGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTc     >  2:641182/1‑93 (MQ=255)

                                                                                     aGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCt    <  1:1091334/93‑1 (MQ=255)

                                                                                       cgcTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTgg  >  1:6251224/1‑93 (MQ=255)

TATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG  >  NC_000913/4008900‑4009079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGACT  >  NC_000913/4008897‑4009082

GCTTATCTGTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              <  SRR4302533.2185429/94‑1 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              >  SRR4302533.1210527/1‑94 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              <  SRR4302533.1737569/94‑1 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              <  SRR4302533.69156/94‑1 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              <  SRR4302533.1705888/94‑1 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCT                                                                                              <  SRR4302533.5288438/94‑1 (MQ=60)

 CTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTG                                                                                             >  SRR4302533.2599625/1‑94 (MQ=60)

 CTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTG                                                                                             >  SRR4302533.3602348/1‑94 (MQ=60)

 CTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTG                                                                                             <  SRR4302533.1007872/94‑1 (MQ=60)

 CTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTG                                                                                             >  SRR4302533.366701/1‑94 (MQ=60)

  TTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGT                                                                                            >  SRR4302533.9226/1‑94 (MQ=60)

  TTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGT                                                                                            >  SRR4302533.5951890/1‑94 (MQ=60)

   TATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTC                                                                                           >  SRR4302533.4626390/1‑94 (MQ=60)

    TTCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302533.4480368/94‑1 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302533.5645516/94‑1 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302533.1156078/94‑1 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302533.551265/94‑1 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302533.3750817/94‑1 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          >  SRR4302533.4758871/1‑94 (MQ=60)

    ATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCT                                                                                          <  SRR4302533.2918792/94‑1 (MQ=60)

     TCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTG                                                                                         >  SRR4302533.3045783/1‑94 (MQ=60)

     TCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTG                                                                                         <  SRR4302533.4001582/94‑1 (MQ=60)

      CTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGC                                                                                        >  SRR4302533.705072/1‑94 (MQ=60)

      CTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGC                                                                                        >  SRR4302533.1480154/1‑94 (MQ=60)

       TCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCG                                                                                       <  SRR4302533.626636/94‑1 (MQ=60)

        CTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGC                                                                                      >  SRR4302533.4320741/1‑94 (MQ=60)

         TACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTCAGCGCTGTCTGCGCG                                                                                     >  SRR4302533.438044/1‑94 (MQ=60)

         TACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCT                                                                                     <  SRR4302533.348758/94‑1 (MQ=60)

          ACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTG                                                                                    >  SRR4302533.1258810/1‑94 (MQ=60)

          ACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTG                                                                                    >  SRR4302533.3209067/1‑94 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   >  SRR4302533.108587/1‑94 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   >  SRR4302533.4888624/1‑94 (MQ=60)

           CCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGG                                                                                   >  SRR4302533.2046717/1‑94 (MQ=60)

            CTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGG                                                                                  <  SRR4302533.2157603/94‑1 (MQ=60)

            CTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGG                                                                                  <  SRR4302533.58376/94‑1 (MQ=60)

             TGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGG                                                                                 <  SRR4302533.1495205/94‑1 (MQ=60)

              GACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGC                                                                                >  SRR4302533.4544745/1‑94 (MQ=60)

              GACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGC                                                                                >  SRR4302533.3640096/1‑94 (MQ=60)

              GACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGC                                                                                >  SRR4302533.963366/1‑94 (MQ=60)

               ACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCT                                                                               >  SRR4302533.1172536/1‑94 (MQ=60)

               ACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCT                                                                               <  SRR4302533.2314969/94‑1 (MQ=60)

                CGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTA                                                                              >  SRR4302533.4886062/1‑94 (MQ=60)

                  GTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATG                                                                            <  SRR4302533.2217837/94‑1 (MQ=60)

                      CCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTT                                                                        >  SRR4302533.576897/1‑94 (MQ=60)

                       CGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTT                                                                       <  SRR4302533.3437082/94‑1 (MQ=60)

                       CGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTT                                                                       >  SRR4302533.5218268/1‑94 (MQ=60)

                       CGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTT                                                                       >  SRR4302533.4790789/1‑94 (MQ=60)

                       CGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTT                                                                       >  SRR4302533.2121006/1‑94 (MQ=60)

                         AGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAG                                                                     <  SRR4302533.5038487/94‑1 (MQ=60)

                         AGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAG                                                                     <  SRR4302533.5765042/94‑1 (MQ=60)

                         AGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAG                                                                     <  SRR4302533.1349190/94‑1 (MQ=60)

                          GCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGC                                                                    <  SRR4302533.3423011/94‑1 (MQ=60)

                          GCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGC                                                                    >  SRR4302533.4965973/1‑94 (MQ=60)

                           CTGCTGCTGTTCACCGTGCTGACGCCGCTCTCCATCACGCTGATTTATGAAATCATGAGTAAGCGCGGTCTTCGCTGcgccgaggcctttagtc                                                                   >  SRR4302533.5182332/1‑77 (MQ=60)

                           CTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCG                                                                   >  SRR4302533.4705794/1‑94 (MQ=60)

                           CTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCG                                                                   <  SRR4302533.1734990/94‑1 (MQ=60)

                             GCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCC                                                                 >  SRR4302533.3421463/1‑94 (MQ=60)

                               TGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTT                                                               <  SRR4302533.1487636/94‑1 (MQ=60)

                               TGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTT                                                               >  SRR4302533.5279715/1‑94 (MQ=60)

                               TGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTT                                                               >  SRR4302533.315211/1‑94 (MQ=60)

                                TCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTG                                                              <  SRR4302533.4041974/94‑1 (MQ=60)

                                GCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTG                                                              >  SRR4302533.3716571/1‑94 (MQ=60)

                                GCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTG                                                              <  SRR4302533.5940571/94‑1 (MQ=60)

                                 CTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGC                                                             <  SRR4302533.1503829/94‑1 (MQ=60)

                                  TGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCT                                                            <  SRR4302533.4911039/94‑1 (MQ=60)

                                   GTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTG                                                           <  SRR4302533.2618389/94‑1 (MQ=60)

                                   GTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTG                                                           <  SRR4302533.1521302/94‑1 (MQ=60)

                                      CACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCG                                                        >  SRR4302533.5190103/1‑94 (MQ=60)

                                       ACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGG                                                       >  SRR4302533.3475259/1‑94 (MQ=60)

                                       ACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGG                                                       >  SRR4302533.1329904/1‑94 (MQ=60)

                                        CCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGT                                                      >  SRR4302533.603813/1‑94 (MQ=60)

                                        CCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGT                                                      <  SRR4302533.3831190/94‑1 (MQ=60)

                                         CGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTG                                                     <  SRR4302533.5408306/94‑1 (MQ=60)

                                         CGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTG                                                     <  SRR4302533.5883972/94‑1 (MQ=60)

                                          GTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGA                                                    >  SRR4302533.3725538/1‑94 (MQ=60)

                                           TGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGAT                                                   >  SRR4302533.5509025/1‑94 (MQ=60)

                                           TGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGAT                                                   >  SRR4302533.2424551/1‑94 (MQ=60)

                                            GCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATT                                                  <  SRR4302533.2835243/94‑1 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 >  SRR4302533.1286301/1‑94 (MQ=60)

                                             CTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTG                                                 <  SRR4302533.2838153/94‑1 (MQ=60)

                                              TGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGG                                                >  SRR4302533.4383175/1‑94 (MQ=60)

                                               GACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGT                                               <  SRR4302533.1659653/94‑1 (MQ=60)

                                               GACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGT                                               <  SRR4302533.388659/94‑1 (MQ=60)

                                               GACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGT                                               <  SRR4302533.4675526/94‑1 (MQ=60)

                                                 CGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGC                                             >  SRR4302533.3103621/1‑94 (MQ=60)

                                                  GCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCC                                            >  SRR4302533.1014616/1‑94 (MQ=60)

                                                  GCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCC                                            <  SRR4302533.39775/94‑1 (MQ=60)

                                                  GCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCC                                            >  SRR4302533.3190630/1‑94 (MQ=60)

                                                   CCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCG                                           >  SRR4302533.4611526/1‑94 (MQ=60)

                                                    CGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGG                                          >  SRR4302533.505769/1‑94 (MQ=60)

                                                    CGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGG                                          <  SRR4302533.4861017/94‑1 (MQ=60)

                                                     GCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGG                                         >  SRR4302533.2312156/1‑94 (MQ=60)

                                                      CTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGA                                        <  SRR4302533.1925625/94‑1 (MQ=60)

                                                      CTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGA                                        >  SRR4302533.3775031/1‑94 (MQ=60)

                                                       TCTACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGAT                                       >  SRR4302533.1360272/1‑94 (MQ=60)

                                                          ACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTAT                                    >  SRR4302533.3121775/1‑94 (MQ=60)

                                                          ACATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTAT                                    >  SRR4302533.2225184/1‑94 (MQ=60)

                                                           CATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATT                                   >  SRR4302533.789896/1‑94 (MQ=60)

                                                            ATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTC                                  >  SRR4302533.5301648/1‑94 (MQ=60)

                                                            ATCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTC                                  <  SRR4302533.4029380/94‑1 (MQ=60)

                                                             TCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCG                                 >  SRR4302533.4213089/1‑94 (MQ=60)

                                                             TCACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCG                                 <  SRR4302533.2115779/94‑1 (MQ=60)

                                                               ACGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCT                               <  SRR4302533.616478/94‑1 (MQ=60)

                                                                CGCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTA                              >  SRR4302533.584458/1‑94 (MQ=60)

                                                                 GCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGGTTATTCGCTAT                             >  SRR4302533.5421577/1‑94 (MQ=60)

                                                                 GCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTAT                             >  SRR4302533.5646811/1‑94 (MQ=60)

                                                                 GCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTAT                             <  SRR4302533.257056/94‑1 (MQ=60)

                                                                 GCTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGGGATTGGTGCCGGGATTATTCGCTAT                             >  SRR4302533.2997355/1‑94 (MQ=60)

                                                                  CTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATG                            >  SRR4302533.4248134/1‑94 (MQ=60)

                                                                  CTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATG                            <  SRR4302533.1679484/94‑1 (MQ=60)

                                                                  CTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATG                            >  SRR4302533.1622307/1‑94 (MQ=60)

                                                                  CTGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATG                            >  SRR4302533.3514034/1‑94 (MQ=60)

                                                                   TGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGA                           >  SRR4302533.2113224/1‑94 (MQ=60)

                                                                   TGATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGA                           >  SRR4302533.1389000/1‑94 (MQ=60)

                                                                    GATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAT                          >  SRR4302533.1326938/1‑94 (MQ=60)

                                                                    GATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAT                          <  SRR4302533.1509758/94‑1 (MQ=60)

                                                                    GATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAT                          <  SRR4302533.2925856/94‑1 (MQ=60)

                                                                    GATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAT                          <  SRR4302533.2925857/94‑1 (MQ=60)

                                                                    GATTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGAT                          <  SRR4302533.2513947/94‑1 (MQ=60)

                                                                      TTTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCA                        <  SRR4302533.3666604/94‑1 (MQ=60)

                                                                       TTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAG                       >  SRR4302533.2941919/1‑94 (MQ=60)

                                                                       TTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAG                       <  SRR4302533.4618542/94‑1 (MQ=60)

                                                                       TTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAG                       <  SRR4302533.4607772/94‑1 (MQ=60)

                                                                       TTATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAG                       <  SRR4302533.4932339/94‑1 (MQ=60)

                                                                        TATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGG                      <  SRR4302533.4583791/94‑1 (MQ=60)

                                                                         ATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGT                     >  SRR4302533.6297802/1‑94 (MQ=60)

                                                                         ATGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGT                     <  SRR4302533.329629/94‑1 (MQ=60)

                                                                          TGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTC                    >  SRR4302533.2245576/1‑94 (MQ=60)

                                                                          TGACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTC                    <  SRR4302533.256901/94‑1 (MQ=60)

                                                                           GACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCA                   <  SRR4302533.2007954/94‑1 (MQ=60)

                                                                            ACATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCAC                  >  SRR4302533.3661231/1‑94 (MQ=60)

                                                                             CATCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACC                 <  SRR4302533.5337013/94‑1 (MQ=60)

                                                                               TCATGAGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGA               >  SRR4302533.593890/1‑94 (MQ=60)

                                                                                    AGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATT          <  SRR4302533.3625338/94‑1 (MQ=60)

                                                                                    AGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATT          <  SRR4302533.2968930/94‑1 (MQ=60)

                                                                                    AGTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATT          >  SRR4302533.1828061/1‑94 (MQ=60)

                                                                                     GTAAGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTT         >  SRR4302533.321874/1‑94 (MQ=60)

                                                                                        AGCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTG      <  SRR4302533.1097781/94‑1 (MQ=60)

                                                                                         GCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG     >  SRR4302533.6288620/1‑94 (MQ=60)

                                                                                         GCGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGG     <  SRR4302533.4583463/94‑1 (MQ=60)

                                                                                          CGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGA    >  SRR4302533.1571379/1‑94 (MQ=60)

                                                                                          CGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGA    >  SRR4302533.6158225/1‑94 (MQ=60)

                                                                                          CGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGA    >  SRR4302533.1306058/1‑94 (MQ=60)

                                                                                          CGCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGA    >  SRR4302533.4206642/1‑94 (MQ=60)

                                                                                           GCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGAC   <  SRR4302533.588963/94‑1 (MQ=60)

                                                                                           GCTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGAC   >  SRR4302533.1545675/1‑94 (MQ=60)

                                                                                            CTGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGACT  >  SRR4302533.3905924/1‑94 (MQ=60)

GCTTATCTCTACCTGACGGTTTCCGAGCTGCTGCTGTTCACCGTGCTGACGCCGCTCTACATCACGCTGATTTATGACATCATGAGTAAGCGCCGTCTGCGCTGGGGCTATGCCTTTAGCGCCTTGCTGGCGGTGATTGGTGCCGGGATTATTCGCTATGATCAGGTCACCGACCATTTCTGGACT  >  NC_000913/4008897‑4009082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`