Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,012,917	G→A	T268I (ACC→ATC)	ysgA ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,012,917	0	G	A	100.0%	766.9 / NA	208	T268I (ACC→ATC)	ysgA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (84/124); total (84/124)

Only 100 of 218 total aligned reads displayed.

AAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGGTGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTC  >  NC_000913/4012827‑4013006

aaaaCGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGgatg                                                                                         <  2:5757353/93‑1 (MQ=255)

  aaCGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGgatggt                                                                                       >  1:5430546/1‑93 (MQ=255)

  aaCGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGgatggt                                                                                       <  2:3077692/93‑1 (MQ=255)

    cgcgcgGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTaa                                                                                     <  2:2019351/93‑1 (MQ=255)

       gcgGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATac                                                                                  >  2:1067139/1‑93 (MQ=255)

       gcgGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATac                                                                                  >  2:145478/1‑93 (MQ=255)

        cgGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTTCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATacc                                                                                 <  2:2730879/93‑1 (MQ=255)

          gCTGGCCAGAATCCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATaccac                                                                               <  2:6057979/93‑1 (MQ=255)

          gCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATaccac                                                                               >  2:334368/1‑93 (MQ=255)

          gCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATaccac                                                                               <  2:2669649/93‑1 (MQ=255)

           gtGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCGGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATaccacc                                                                              <  2:3702930/92‑1 (MQ=255)

           cTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATaccacc                                                                              <  1:1584295/93‑1 (MQ=255)

           cTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATaccacc                                                                              <  2:5671683/93‑1 (MQ=255)

           cTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATaccacc                                                                              <  1:2893447/93‑1 (MQ=255)

            tGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCAccc                                                                             >  2:500303/1‑93 (MQ=255)

            tGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCAccc                                                                             >  1:5549908/1‑93 (MQ=255)

             ggCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCg                                                                            <  2:4416188/93‑1 (MQ=255)

                cAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTc                                                                         >  2:846613/1‑93 (MQ=255)

                 aGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCt                                                                        >  1:5330394/1‑93 (MQ=255)

                  gAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCtt                                                                       >  2:5982292/1‑93 (MQ=255)

                     aCCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTtc                                                                    <  2:4862070/93‑1 (MQ=255)

                      cccGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTtct                                                                   <  2:805695/93‑1 (MQ=255)

                       ccGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTtctc                                                                  <  2:1237589/93‑1 (MQ=255)

                        cgcgcgGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCa                                                                 <  2:6063553/93‑1 (MQ=255)

                        cgcgcgGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCa                                                                 <  1:1146716/93‑1 (MQ=255)

                        cgcgcgGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCa                                                                 >  1:2109456/1‑93 (MQ=255)

                         gcgcgGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCAt                                                                >  1:2650981/1‑93 (MQ=255)

                         gcgcgGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCAt                                                                <  2:1963584/93‑1 (MQ=255)

                            cgtcACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTAc                                                             <  2:4257317/90‑1 (MQ=255)

                             ggCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACa                                                            >  1:911385/1‑93 (MQ=255)

                              gCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAg                                                           >  1:4916798/1‑93 (MQ=255)

                              gCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAg                                                           <  1:3825668/93‑1 (MQ=255)

                               cACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGc                                                          >  1:849669/1‑93 (MQ=255)

                               cACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGc                                                          >  1:2278025/1‑93 (MQ=255)

                                 cTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGa                                                        <  1:51738/93‑1 (MQ=255)

                                 cTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGa                                                        <  2:1675558/93‑1 (MQ=255)

                                  tGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGAc                                                       >  1:3119599/1‑93 (MQ=255)

                                  tGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGAc                                                       >  1:869051/1‑93 (MQ=255)

                                  tGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGAc                                                       >  1:1472124/1‑93 (MQ=255)

                                     cGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGActtc                                                    >  1:2699179/1‑93 (MQ=255)

                                      gAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGActtct                                                   >  1:3877513/1‑93 (MQ=255)

                                       aaCATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGActtctt                                                  <  1:6269873/93‑1 (MQ=255)

                                        aCATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACttcttc                                                 <  1:4858867/93‑1 (MQ=255)

                                         cATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTcc                                                >  2:2132311/1‑93 (MQ=255)

                                          aTGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTccc                                               <  1:5849500/93‑1 (MQ=255)

                                           tGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCcca                                              >  1:942344/1‑93 (MQ=255)

                                             gTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCccacc                                            <  2:4831171/93‑1 (MQ=255)

                                              tGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCccacca                                           >  1:1766832/1‑93 (MQ=255)

                                              tGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCccacca                                           <  2:692232/93‑1 (MQ=255)

                                               gCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCAt                                          >  1:5479771/1‑93 (MQ=255)

                                               gCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCAt                                          <  2:1856566/93‑1 (MQ=255)

                                                 aGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATAc                                        <  2:4084194/93‑1 (MQ=255)

                                                 aGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATAc                                        >  2:2428278/1‑93 (MQ=255)

                                                  ggcggcGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACt                                       <  2:4591392/93‑1 (MQ=255)

                                                  ggcggcGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACt                                       <  2:4725694/93‑1 (MQ=255)

                                                       cgcAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTa                                  <  1:3388772/93‑1 (MQ=255)

                                                          aGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAAc                               <  2:3809329/93‑1 (MQ=255)

                                                          aGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAAc                               <  1:1680379/93‑1 (MQ=255)

                                                           gAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAAcc                              <  2:5477733/93‑1 (MQ=255)

                                                            aaCTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCa                             >  2:1191407/1‑93 (MQ=255)

                                                              cTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCAtt                           >  2:5785930/1‑93 (MQ=255)

                                                               ttGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTc                          <  1:6004104/93‑1 (MQ=255)

                                                                tGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTcc                         <  2:4346742/93‑1 (MQ=255)

                                                                 gCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCa                        <  2:3179467/93‑1 (MQ=255)

                                                                  cGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAg                       <  2:3859530/93‑1 (MQ=255)

                                                                    tCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCa                     <  1:3502109/93‑1 (MQ=255)

                                                                     cGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCAt                    <  1:3626996/93‑1 (MQ=255)

                                                                     cGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCAt                    <  1:4038673/93‑1 (MQ=255)

                                                                     cGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCAt                    >  1:4218349/1‑93 (MQ=255)

                                                                      gggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATa                   <  2:2325093/93‑1 (MQ=255)

                                                                      gggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATa                   <  2:2915277/93‑1 (MQ=255)

                                                                      gggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATa                   <  1:3646287/93‑1 (MQ=255)

                                                                      gggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATa                   <  2:1699161/93‑1 (MQ=255)

                                                                       ggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAc                  <  1:1902096/93‑1 (MQ=255)

                                                                       ggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAc                  <  2:3540698/93‑1 (MQ=255)

                                                                       ggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAc                  <  1:331488/93‑1 (MQ=255)

                                                                       ggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAc                  >  1:2370128/1‑93 (MQ=255)

                                                                       ggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAc                  >  1:5506774/1‑93 (MQ=255)

                                                                       ggggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACAATTCCAGCATAc                  >  1:1238709/1‑93 (MQ=255)

                                                                         ggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGc                >  2:2827430/1‑93 (MQ=255)

                                                                         ggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGc                <  2:1996976/93‑1 (MQ=255)

                                                                         ggTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGc                <  2:2231344/93‑1 (MQ=255)

                                                                            aaaaTCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgc             >  1:137198/1‑93 (MQ=255)

                                                                            aaaaTCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgc             <  2:5641084/93‑1 (MQ=255)

                                                                             aaaTCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgcc            <  1:2535909/93‑1 (MQ=255)

                                                                             aaaTCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgcc            <  1:2569532/93‑1 (MQ=255)

                                                                              aaTCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgcca           <  1:1024392/93‑1 (MQ=255)

                                                                               aTCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgccag          >  1:5894943/1‑93 (MQ=255)

                                                                               aTCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgccag          >  1:435398/1‑93 (MQ=255)

                                                                                tCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgccagc         >  2:2421919/1‑93 (MQ=255)

                                                                                tCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCAAGCATACGCTgccagc         >  2:1597173/1‑93 (MQ=255)

                                                                                 ccAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTgccagcc        >  2:1267777/1‑93 (MQ=255)

                                                                                   aaaCCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAt      <  1:5735052/93‑1 (MQ=255)

                                                                                    aaCCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAtc     <  1:1174127/93‑1 (MQ=255)

                                                                                    aaCCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTCCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAtc     <  1:1284633/93‑1 (MQ=255)

                                                                                     aCCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAtct    <  1:2391332/93‑1 (MQ=255)

                                                                                      ccGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAtctt   >  2:5079418/1‑93 (MQ=255)

                                                                                      ccGGATGGTAACACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAtctt   <  1:6010331/93‑1 (MQ=255)

                                                                                       cGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAtcttc  <  2:4393691/93‑1 (MQ=255)

                                                                                       cGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCAtcttc  <  1:3568686/93‑1 (MQ=255)

AAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGGTGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTC  >  NC_000913/4012827‑4013006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGGTGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTCTGCA  >  NC_000913/4012824‑4013010

CTGAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGA                                                                                               <  SRR4302533.3712307/94‑1 (MQ=60)

CTGAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGA                                                                                               >  SRR4302533.4055252/1‑94 (MQ=60)

  GAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATG                                                                                             <  SRR4302533.5325756/94‑1 (MQ=60)

  GAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATG                                                                                             <  SRR4302533.4761087/94‑1 (MQ=60)

  GAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATG                                                                                             <  SRR4302533.1301143/94‑1 (MQ=60)

  GAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATG                                                                                             <  SRR4302533.1970325/94‑1 (MQ=60)

    AAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGT                                                                                           >  SRR4302533.5463252/1‑94 (MQ=60)

      ACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAA                                                                                         <  SRR4302533.2678142/94‑1 (MQ=60)

        GCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATA                                                                                       >  SRR4302533.6043989/1‑94 (MQ=60)

         CGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATAC                                                                                      >  SRR4302533.5010279/1‑94 (MQ=60)

          GCGGCTGTCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACC                                                                                     <  SRR4302533.3778325/94‑1 (MQ=60)

            GGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCAC                                                                                   >  SRR4302533.3464201/1‑94 (MQ=60)

              CTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCC                                                                                 <  SRR4302533.2852654/94‑1 (MQ=60)

              CTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCC                                                                                 <  SRR4302533.1593841/94‑1 (MQ=60)

              CTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCC                                                                                 >  SRR4302533.5583424/1‑94 (MQ=60)

              CTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCC                                                                                 <  SRR4302533.5576226/94‑1 (MQ=60)

              CTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCC                                                                                 >  SRR4302533.5078422/1‑94 (MQ=60)

              CTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCC                                                                                 <  SRR4302533.2911229/94‑1 (MQ=60)

                  CCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTC                                                                             >  SRR4302533.319969/1‑94 (MQ=60)

                   CAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCT                                                                            >  SRR4302533.5362341/1‑94 (MQ=60)

                   CAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCT                                                                            >  SRR4302533.128510/1‑94 (MQ=60)

                    AGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTT                                                                           >  SRR4302533.1530007/1‑94 (MQ=60)

                      AAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTT                                                                         >  SRR4302533.900825/1‑94 (MQ=60)

                       AACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTC                                                                        >  SRR4302533.366736/1‑94 (MQ=60)

                       AACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTC                                                                        <  SRR4302533.1410323/94‑1 (MQ=60)

                        ACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCT                                                                       <  SRR4302533.3573535/94‑1 (MQ=60)

                         CCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTC                                                                      >  SRR4302533.4255671/1‑94 (MQ=60)

                         CCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTC                                                                      >  SRR4302533.4710050/1‑94 (MQ=60)

                          CCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCA                                                                     >  SRR4302533.2122469/1‑94 (MQ=60)

                          CCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAAACGGATGGTAATACCACCCGGCATTTTCTCA                                                                     >  SRR4302533.1441380/1‑94 (MQ=60)

                           CGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCAT                                                                    >  SRR4302533.2667264/1‑94 (MQ=60)

                           CGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCAT                                                                    <  SRR4302533.5454530/94‑1 (MQ=60)

                           CGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCAT                                                                    <  SRR4302533.1153560/94‑1 (MQ=60)

                             CGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAACCCGGATGGTAATACCACCCGGTCTTTTCTCATTA                                                                  <  SRR4302533.2290217/94‑1 (MQ=60)

                              GCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTAC                                                                 <  SRR4302533.1144048/94‑1 (MQ=60)

                               CGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACA                                                                <  SRR4302533.2599508/94‑1 (MQ=60)

                               CGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACA                                                                >  SRR4302533.916731/1‑94 (MQ=60)

                                GGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAG                                                               >  SRR4302533.4946579/1‑94 (MQ=60)

                                GGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAG                                                               <  SRR4302533.1167301/94‑1 (MQ=60)

                                GGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAG                                                               <  SRR4302533.91977/94‑1 (MQ=60)

                                 GCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGC                                                              >  SRR4302533.2292132/1‑94 (MQ=60)

                                 GCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGC                                                              <  SRR4302533.5935840/94‑1 (MQ=60)

                                 GCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGC                                                              <  SRR4302533.3849057/94‑1 (MQ=60)

                                 GCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGC                                                              >  SRR4302533.854642/1‑94 (MQ=60)

                                  CACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCG                                                             <  SRR4302533.364708/94‑1 (MQ=60)

                                    CTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGAC                                                           >  SRR4302533.3138783/1‑94 (MQ=60)

                                    CTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGAC                                                           >  SRR4302533.874151/1‑94 (MQ=60)

                                    CTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGAC                                                           <  SRR4302533.52088/94‑1 (MQ=60)

                                    CTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGAC                                                           >  SRR4302533.1481022/1‑94 (MQ=60)

                                     TGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACT                                                          <  SRR4302533.6235427/94‑1 (MQ=60)

                                       GCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTC                                                        >  SRR4302533.2715736/1‑94 (MQ=60)

                                        CGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCT                                                       >  SRR4302533.3901178/1‑94 (MQ=60)

                                        CGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCT                                                       <  SRR4302533.5901381/94‑1 (MQ=60)

                                          AACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTC                                                     <  SRR4302533.6307333/94‑1 (MQ=60)

                                           ACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCC                                                    <  SRR4302533.1227475/94‑1 (MQ=60)

                                           ACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCC                                                    <  SRR4302533.4888318/94‑1 (MQ=60)

                                             ATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCA                                                  <  SRR4302533.4188513/94‑1 (MQ=60)

                                             ATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCA                                                  <  SRR4302533.5884866/94‑1 (MQ=60)

                                             ATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCA                                                  >  SRR4302533.947889/1‑94 (MQ=60)

                                                GTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCA                                               <  SRR4302533.3382982/94‑1 (MQ=60)

                                                GTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCA                                               >  SRR4302533.1777590/1‑94 (MQ=60)

                                                GTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCA                                               <  SRR4302533.3879762/94‑1 (MQ=60)

                                                 TGNANGNGGCGCAGAACTTGCGNCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCAT                                              <  SRR4302533.5800347/94‑1 (MQ=60)

                                                 TGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCAT                                              >  SRR4302533.5512809/1‑94 (MQ=60)

                                                   CAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATAC                                            <  SRR4302533.3064756/94‑1 (MQ=60)

                                                    AGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACT                                           <  SRR4302533.5826402/94‑1 (MQ=60)

                                                          CGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAA                                     >  SRR4302533.5527556/1‑94 (MQ=60)

                                                          CGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAA                                     <  SRR4302533.3409697/94‑1 (MQ=60)

                                                           GCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAA                                    >  SRR4302533.1894514/1‑94 (MQ=60)

                                                            CAGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAAC                                   >  SRR4302533.2014807/1‑94 (MQ=60)

                                                             AGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACC                                  <  SRR4302533.1690559/94‑1 (MQ=60)

                                                             AGAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGGAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACC                                  >  SRR4302533.6278947/1‑94 (MQ=60)

                                                              GAACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCA                                 >  SRR4302533.872459/1‑94 (MQ=60)

                                                               AACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCAT                                <  SRR4302533.1378836/94‑1 (MQ=60)

                                                               AACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCAT                                >  SRR4302533.1750415/1‑94 (MQ=60)

                                                                ACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATT                               >  SRR4302533.2358895/1‑94 (MQ=60)

                                                                ACTTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATT                               <  SRR4302533.2557142/94‑1 (MQ=60)

                                                                  TTGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCC                             <  SRR4302533.6040482/94‑1 (MQ=60)

                                                                   TGCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCA                            <  SRR4302533.813234/94‑1 (MQ=60)

                                                                    GCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAG                           <  SRR4302533.4899786/94‑1 (MQ=60)

                                                                    GCGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAG                           <  SRR4302533.2413011/94‑1 (MQ=60)

                                                                     CGTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGC                          <  SRR4302533.3878855/94‑1 (MQ=60)

                                                                      GTCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCA                         <  SRR4302533.5509328/94‑1 (MQ=60)

                                                                       TCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCAT                        >  SRR4302533.4243862/1‑94 (MQ=60)

                                                                       TCGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCAT                        <  SRR4302533.3523704/94‑1 (MQ=60)

                                                                        CGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATA                       <  SRR4302533.4063247/94‑1 (MQ=60)

                                                                        CGGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATA                       <  SRR4302533.3649314/94‑1 (MQ=60)

                                                                         GGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAC                      <  SRR4302533.3668705/94‑1 (MQ=60)

                                                                         GGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAC                      >  SRR4302533.5540004/1‑94 (MQ=60)

                                                                         GGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAC                      >  SRR4302533.2384788/1‑94 (MQ=60)

                                                                         GGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATAC                      >  SRR4302533.2398939/1‑94 (MQ=60)

                                                                         GGGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACAATTCCAGCATAC                      >  SRR4302533.1246110/1‑94 (MQ=60)

                                                                          GGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACG                     <  SRR4302533.1913707/94‑1 (MQ=60)

                                                                          GGGGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACG                     <  SRR4302533.333517/94‑1 (MQ=60)

                                                                          GGCGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACG                     <  SRR4302533.2186939/94‑1 (MQ=60)

                                                                            GGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCT                   >  SRR4302533.5601494/1‑94 (MQ=60)

                                                                            GGTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCT                   >  SRR4302533.1688490/1‑94 (MQ=60)

                                                                             GTAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTG                  <  SRR4302533.3481757/94‑1 (MQ=60)

                                                                              TAAAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGC                 >  SRR4302533.138067/1‑94 (MQ=60)

                                                                                AAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCA               <  SRR4302533.2551519/94‑1 (MQ=60)

                                                                                AAATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCA               <  SRR4302533.2585344/94‑1 (MQ=60)

                                                                                 AATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAG              >  SRR4302533.437993/1‑94 (MQ=60)

                                                                                 AATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAG              <  SRR4302533.1030414/94‑1 (MQ=60)

                                                                                 AATCCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAG              >  SRR4302533.5930544/1‑94 (MQ=60)

                                                                                    CCAAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCA           >  SRR4302533.5234092/1‑94 (MQ=60)

                                                                                      AAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATC         >  SRR4302533.3928282/1‑94 (MQ=60)

                                                                                      AAACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATC         <  SRR4302533.5769672/94‑1 (MQ=60)

                                                                                       AACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTTAACCATTCCAGCATACGCTGCCAGCCATCT        >  SRR4302533.5552861/1‑94 (MQ=60)

                                                                                       AACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCT        <  SRR4302533.1181175/94‑1 (MQ=60)

                                                                                       AACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTCCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCT        <  SRR4302533.1292360/94‑1 (MQ=60)

                                                                                        ACCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTT       <  SRR4302533.2406096/94‑1 (MQ=60)

                                                                                         CCGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTC      <  SRR4302533.2600976/94‑1 (MQ=60)

                                                                                         CCGGATGGTAACACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTC      <  SRR4302533.6046744/94‑1 (MQ=60)

                                                                                          CGGATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTCT     <  SRR4302533.3590681/94‑1 (MQ=60)

                                                                                            GATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTCTGC   >  SRR4302533.6139578/1‑94 (MQ=60)

                                                                                            GATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTCTGC   <  SRR4302533.1307242/94‑1 (MQ=60)

                                                                                             ATGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTCTGCA  <  SRR4302533.2314897/94‑1 (MQ=60)

CTGAAAACGCGCGGCTGGCCAGAAACCCGCGCGGCACTGGCGAACATGGTGCAGGCGGCGCAGAACTTGCGTCGGGGGTAAAATCCAAACCGGGTGGTAATACCACCCGGTCTTTTCTCATTACAGCGACTTCTTCCCACCATACTGCTTAAACCATTCCAGCATACGCTGCCAGCCATCTTCTGCA  >  NC_000913/4012824‑4013010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`