Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,032,327	A→G	Q44R (CAG→CGG)	hemG →	protoporphyrin oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,032,327	0	A	G	100.0%	748.3 / NA	231	Q44R (CAG→CGG)	hemG	protoporphyrin oxidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (114/117); total (114/117)

Only 100 of 237 total aligned reads displayed.

CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATG  >  NC_000913/4032237‑4032416

cgcgcgAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGt                                                                                         <  1:3636534/93‑1 (MQ=255)

  cgcgAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTgg                                                                                       >  1:5809976/1‑93 (MQ=255)

      agaTTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGaaa                                                                                   >  1:1978905/1‑93 (MQ=255)

        aTTGCCTCCTACCTGGCTTCGGAAATGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAAc                                                                                 >  2:937716/1‑93 (MQ=255)

         ttGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGCAAACt                                                                                >  2:4819064/1‑93 (MQ=255)

           gCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTAt                                                                              >  2:2185330/1‑93 (MQ=255)

           gCCTCCTACCAGGCTTCGGAACTGAACGTACAGGGGAACCAGACAGATGTCACCAATGTGCACCGCATTAAAGAACCACGGTGGGACCACTAt                                                                              <  1:6297817/93‑1 (MQ=255)

            ccccctACCTGGCTTCGGAACTGAAAGAACTGGTGATCCAGGCGGATGTCGCCAATGTGCACAGCATTGAAGAACCACGGTGGGAAAACTATg                                                                             <  1:2138638/90‑1 (MQ=255)

              tcctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGAc                                                                           <  2:3062977/93‑1 (MQ=255)

              tcctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGAc                                                                           <  2:567052/93‑1 (MQ=255)

               cctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGAcc                                                                          <  1:1293982/93‑1 (MQ=255)

                ctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCg                                                                         >  1:4760294/1‑93 (MQ=255)

                ctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCg                                                                         >  2:1418640/1‑93 (MQ=255)

                 tACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCgt                                                                        >  1:3371558/1‑93 (MQ=255)

                   ccTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGCAAACTATGACCgtgt                                                                      >  1:3012653/1‑93 (MQ=255)

                   ccTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCgtgt                                                                      >  2:2676566/1‑93 (MQ=255)

                   ccTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCgtgt                                                                      >  2:4751157/1‑93 (MQ=255)

                     tGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTgg                                                                    <  2:4586709/93‑1 (MQ=255)

                     tGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTgg                                                                    >  2:3304025/1‑93 (MQ=255)

                     tGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTgg                                                                    >  2:5312413/1‑93 (MQ=255)

                      ggCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGt                                                                   <  1:6153832/93‑1 (MQ=255)

                       gCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTc                                                                  >  2:4980246/1‑93 (MQ=255)

                       gCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTc                                                                  <  1:3488198/93‑1 (MQ=255)

                       gCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTc                                                                  >  2:6153876/1‑93 (MQ=255)

                         ttCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAt                                                                <  1:875011/93‑1 (MQ=255)

                         ttCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAt                                                                >  1:514967/1‑93 (MQ=255)

                         ttCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAt                                                                <  1:3337860/93‑1 (MQ=255)

                         ttCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAt                                                                >  1:2754810/1‑93 (MQ=255)

                         ttCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAt                                                                >  1:2506971/1‑93 (MQ=255)

                          tCGGAACTGAAAGATCTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAGCCACGGTGGGAAACCTATGACCGTGTGGTCAtt                                                               <  1:960003/93‑1 (MQ=255)

                           cGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTg                                                              <  2:2538074/93‑1 (MQ=255)

                           cGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTg                                                              <  1:5903358/93‑1 (MQ=255)

                               aCTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGc                                                          <  1:1075031/93‑1 (MQ=255)

                               aCTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGc                                                          >  1:5476047/1‑93 (MQ=255)

                                cTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCt                                                         <  2:2746890/93‑1 (MQ=255)

                                 tGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCtt                                                        >  2:4483410/1‑93 (MQ=255)

                                  gAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTc                                                       <  1:1694299/93‑1 (MQ=255)

                                  gAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTc                                                       <  1:1555455/93‑1 (MQ=255)

                                      gAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTTGTGCTTCTAtt                                                   <  2:2963104/93‑1 (MQ=255)

                                       aaCTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTc                                                  <  2:2766375/93‑1 (MQ=255)

                                           ggggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTa                                              <  1:5186975/93‑1 (MQ=255)

                                           ggggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTa                                              <  2:2238516/93‑1 (MQ=255)

                                            gggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAt                                             <  2:1321165/93‑1 (MQ=255)

                                            gggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAt                                             <  1:44734/93‑1 (MQ=255)

                                              gATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATgg                                           >  2:5410593/1‑93 (MQ=255)

                                              gATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATgg                                           <  1:2032265/93‑1 (MQ=255)

                                               aTCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGt                                          <  2:1386875/93‑1 (MQ=255)

                                               aTCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGt                                          >  2:112998/1‑93 (MQ=255)

                                               aTCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGt                                          <  1:4614928/93‑1 (MQ=255)

                                               aTCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGt                                          <  1:3829361/93‑1 (MQ=255)

                                                tCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTc                                         >  1:5543440/1‑93 (MQ=255)

                                                 ccAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCa                                        <  2:2070856/93‑1 (MQ=255)

                                                 ccAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCa                                        <  1:3541063/93‑1 (MQ=255)

                                                  cAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAc                                       >  1:747858/1‑93 (MQ=255)

                                                   aGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACt                                      >  2:4401456/1‑93 (MQ=255)

                                                       ggATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCa                                  >  1:1002836/1‑93 (MQ=255)

                                                       ggATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCa                                  >  1:482600/1‑93 (MQ=255)

                                                       ggATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCa                                  >  2:1088780/1‑93 (MQ=255)

                                                       ggATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCa                                  >  2:574010/1‑93 (MQ=255)

                                                        gATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAt                                 >  1:4180804/1‑93 (MQ=255)

                                                        gATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAt                                 >  2:1726957/1‑93 (MQ=255)

                                                          tGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTc                               >  1:1597976/1‑93 (MQ=255)

                                                           gTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCa                              >  1:23374/1‑93 (MQ=255)

                                                           gTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCa                              <  2:316446/93‑1 (MQ=255)

                                                             cGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgt                            <  2:1051128/93‑2 (MQ=255)

                                                             cGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgt                            <  1:1349489/93‑2 (MQ=255)

                                                              gCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgtg                           >  1:4381495/1‑91 (MQ=255)

                                                              gCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgtg                           <  2:2381684/93‑3 (MQ=255)

                                                               ccAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgtgt                          <  1:4891900/93‑1 (MQ=255)

                                                               ccAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgtgt                          <  2:6015906/93‑1 (MQ=255)

                                                                cAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGtt                         >  1:4012019/1‑93 (MQ=255)

                                                                 aaTGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTc                        >  1:724692/1‑93 (MQ=255)

                                                                 aaTGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTc                        >  1:633491/1‑93 (MQ=255)

                                                                 aaTGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTc                        <  1:82023/93‑1 (MQ=255)

                                                                  aTGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTcc                       >  2:3779473/1‑93 (MQ=255)

                                                                   tgtgCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCa                      >  1:1364826/1‑93 (MQ=255)

                                                                   tgtgCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCa                      <  1:5992833/93‑1 (MQ=255)

                                                                    gtgCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAg                     >  1:1142720/1‑93 (MQ=255)

                                                                      gCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGa                   <  1:5768378/93‑1 (MQ=255)

                                                                      gCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGa                   <  1:206371/93‑1 (MQ=255)

                                                                        aCCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAt                 <  2:5905640/93‑1 (MQ=255)

                                                                        aCCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAt                 >  2:3756224/1‑93 (MQ=255)

                                                                        aCCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAt                 >  2:4229558/1‑93 (MQ=255)

                                                                           gCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTg              >  1:6195518/1‑93 (MQ=255)

                                                                           gCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTg              >  2:3000622/1‑93 (MQ=255)

                                                                            cATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGt             >  1:5085359/1‑93 (MQ=255)

                                                                             aTTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTc            <  1:1829423/93‑1 (MQ=255)

                                                                              ttGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCa           >  1:2766455/1‑93 (MQ=255)

                                                                              ttGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCa           >  2:3210624/1‑93 (MQ=255)

                                                                                 aagaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGGATTTGTCaaaa        >  2:1556552/1‑93 (MQ=255)

                                                                                 aagaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaa        >  1:5282461/1‑93 (MQ=255)

                                                                                  agaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaaa       <  2:5812587/93‑1 (MQ=255)

                                                                                   gaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaaaa      <  1:610691/93‑1 (MQ=255)

                                                                                    aaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTTCCATTCAGTGTTCCAGGAATTTGTCAAAAAAc     <  1:608895/93‑1 (MQ=255)

                                                                                    aaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAAc     <  1:2716310/93‑1 (MQ=255)

                                                                                    aaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAAc     <  2:4041270/93‑1 (MQ=255)

                                                                                    aaCCACGGTGCGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAAc     <  2:59421/93‑1 (MQ=255)

                                                                                     aCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACa    <  1:4864396/93‑1 (MQ=255)

                                                                                      ccACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACAt   <  2:366172/93‑1 (MQ=255)

                                                                                       cacgGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATg  <  1:3449765/93‑1 (MQ=255)

CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATG  >  NC_000913/4032237‑4032416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATGCGAC  >  NC_000913/4032234‑4032420

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACG                                                                                               <  SRR4302533.2914083/94‑1 (MQ=60)

   CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTG                                                                                            <  SRR4302533.3658895/94‑1 (MQ=60)

   CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTG                                                                                            <  SRR4302533.2759462/94‑1 (MQ=60)

    GCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGG                                                                                           >  SRR4302533.5845062/1‑94 (MQ=60)

    GCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGG                                                                                           <  SRR4302533.5859449/94‑1 (MQ=60)

        GAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAA                                                                                       >  SRR4302533.1991025/1‑94 (MQ=60)

          GATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAAC                                                                                     >  SRR4302533.5928218/1‑94 (MQ=60)

             TGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTAT                                                                                  >  SRR4302533.967172/1‑94 (MQ=60)

             TGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTAT                                                                                  >  SRR4302533.2743203/1‑94 (MQ=60)

             TGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTAT                                                                                  >  SRR4302533.2054886/1‑94 (MQ=60)

              GCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATG                                                                                 >  SRR4302533.5697648/1‑94 (MQ=60)

               CCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGA                                                                                >  SRR4302533.1504120/1‑94 (MQ=60)

               CCCCCTACCTGGCTTCGGAACTGAAAGAACTGGTGATCCAGGCGGATGTCGCCAATGTGCACAGCATTGAAGAACCACGGTGGGAAAACTATGA                                                                                <  SRR4302533.2151823/94‑1 (MQ=60)

                  CCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCG                                                                             <  SRR4302533.1301775/94‑1 (MQ=60)

                  CCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCG                                                                             <  SRR4302533.3218044/94‑1 (MQ=60)

                  CCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCG                                                                             >  SRR4302533.693233/1‑94 (MQ=60)

                  CCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCG                                                                             >  SRR4302533.4789174/1‑94 (MQ=60)

                   CTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGT                                                                            >  SRR4302533.1052350/1‑94 (MQ=60)

                   CTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGT                                                                            <  SRR4302533.4441814/94‑1 (MQ=60)

                   CTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGT                                                                            >  SRR4302533.3392377/1‑94 (MQ=60)

                    TACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTG                                                                           <  SRR4302533.1778315/94‑1 (MQ=60)

                     ACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGCAAACTATGACCGTGT                                                                          >  SRR4302533.3031084/1‑94 (MQ=60)

                     ACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGT                                                                          <  SRR4302533.6302838/94‑1 (MQ=60)

                     ACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGT                                                                          <  SRR4302533.4813363/94‑1 (MQ=60)

                       CTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGG                                                                        <  SRR4302533.3579327/94‑1 (MQ=60)

                         GGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTC                                                                      <  SRR4302533.6190863/94‑1 (MQ=60)

                         GGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTC                                                                      >  SRR4302533.853078/1‑94 (MQ=60)

                          GCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCA                                                                     <  SRR4302533.3509708/94‑1 (MQ=60)

                           CTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAT                                                                    >  SRR4302533.2771704/1‑94 (MQ=60)

                           CTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAT                                                                    >  SRR4302533.1433673/1‑94 (MQ=60)

                           CTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAT                                                                    >  SRR4302533.518025/1‑94 (MQ=60)

                           CTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAT                                                                    >  SRR4302533.2522424/1‑94 (MQ=60)

                            TTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATT                                                                   <  SRR4302533.3358491/94‑1 (MQ=60)

                            TTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATT                                                                   >  SRR4302533.1113629/1‑94 (MQ=60)

                            TTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATT                                                                   <  SRR4302533.880147/94‑1 (MQ=60)

                             TCGGAACTGAAAGATCTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAGCCACGGTGGGAAACCTATGACCGTGTGGTCATTG                                                                  <  SRR4302533.965648/94‑1 (MQ=60)

                              CGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGG                                                                 <  SRR4302533.5939008/94‑1 (MQ=60)

                              CGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGG                                                                 <  SRR4302533.5022242/94‑1 (MQ=60)

                              CGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGG                                                                 >  SRR4302533.2781185/1‑94 (MQ=60)

                               GGAACTGAAAGAACTGGGGATCCAGCCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGT                                                                <  SRR4302533.5061444/94‑1 (MQ=60)

                                GAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTG                                                               <  SRR4302533.2923152/94‑1 (MQ=60)

                                 AACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGC                                                              >  SRR4302533.2111427/1‑94 (MQ=60)

                                 AACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGC                                                              >  SRR4302533.5509055/1‑94 (MQ=60)

                                  ACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCT                                                             >  SRR4302533.5951177/1‑94 (MQ=60)

                                  ACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCT                                                             <  SRR4302533.1081368/94‑1 (MQ=60)

                                  ACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGGGGGGCCATTGGGGCT                                                             >  SRR4302533.4400983/1‑94 (MQ=60)

                                   CTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTT                                                            >  SRR4302533.5190690/1‑94 (MQ=60)

                                     GAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCT                                                          <  SRR4302533.1704563/94‑1 (MQ=60)

                                     GAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCT                                                          <  SRR4302533.1564818/94‑1 (MQ=60)

                                     GAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCT                                                          <  SRR4302533.3456792/94‑1 (MQ=60)

                                      AAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTA                                                         <  SRR4302533.1206888/94‑1 (MQ=60)

                                      AAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTA                                                         <  SRR4302533.3551690/94‑1 (MQ=60)

                                        AGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATT                                                       <  SRR4302533.4915068/94‑1 (MQ=60)

                                         AAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTC                                                      <  SRR4302533.5273117/94‑1 (MQ=60)

                                          AACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCG                                                     <  SRR4302533.4447841/94‑1 (MQ=60)

                                           ACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGC                                                    >  SRR4302533.1350797/1‑94 (MQ=60)

                                            CTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCT                                                   <  SRR4302533.829303/94‑1 (MQ=60)

                                             TGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTA                                                  >  SRR4302533.6139167/1‑94 (MQ=60)

                                              GGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAT                                                 <  SRR4302533.5218284/94‑1 (MQ=60)

                                              GGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAT                                                 <  SRR4302533.5836078/94‑1 (MQ=60)

                                               GGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATG                                                <  SRR4302533.45043/94‑1 (MQ=60)

                                                GGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGG                                               <  SRR4302533.3662247/94‑1 (MQ=60)

                                                GGATCCAGGCGGATGTCGCAAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGG                                               <  SRR4302533.3491562/94‑1 (MQ=60)

                                                 GATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGT                                              <  SRR4302533.2044803/94‑1 (MQ=60)

                                                  ATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTC                                             <  SRR4302533.4642879/94‑1 (MQ=60)

                                                  ATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTC                                             <  SRR4302533.3852773/94‑1 (MQ=60)

                                                  ATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTC                                             >  SRR4302533.5576920/1‑94 (MQ=60)

                                                    CCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAC                                           >  SRR4302533.5153973/1‑94 (MQ=60)

                                                    CCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAC                                           >  SRR4302533.3583254/1‑94 (MQ=60)

                                                    CCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAC                                           >  SRR4302533.752261/1‑94 (MQ=60)

                                                    CCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAC                                           <  SRR4302533.3562882/94‑1 (MQ=60)

                                                     CAGGTGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACT                                          <  SRR4302533.6155775/94‑1 (MQ=60)

                                                     CAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACT                                          >  SRR4302533.2600355/1‑94 (MQ=60)

                                                     CAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACT                                          <  SRR4302533.82190/94‑1 (MQ=60)

                                                      AGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTA                                         >  SRR4302533.3887641/1‑94 (MQ=60)

                                                       GGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTAC                                        >  SRR4302533.750443/1‑94 (MQ=60)

                                                        GCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACC                                       <  SRR4302533.6117042/94‑1 (MQ=60)

                                                         CGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCA                                      >  SRR4302533.1008697/1‑94 (MQ=60)

                                                         CGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCA                                      >  SRR4302533.485482/1‑94 (MQ=60)

                                                         CGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCA                                      <  SRR4302533.5479442/94‑1 (MQ=60)

                                                          GGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAT                                     >  SRR4302533.4206126/1‑94 (MQ=60)

                                                          GGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAT                                     >  SRR4302533.5193287/1‑94 (MQ=60)

                                                           GATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATT                                    <  SRR4302533.2391844/94‑1 (MQ=60)

                                                           GATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATT                                    <  SRR4302533.4200531/94‑1 (MQ=60)

                                                            ATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTC                                   >  SRR4302533.1607650/1‑94 (MQ=60)

                                                             TGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCA                                  >  SRR4302533.23530/1‑94 (MQ=60)

                                                             TGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCA                                  <  SRR4302533.5555176/94‑1 (MQ=60)

                                                              GTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAG                                 <  SRR4302533.1199265/94‑1 (MQ=60)

                                                               TCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGT                                <  SRR4302533.3466457/94‑1 (MQ=60)

                                                                CGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTG                               >  SRR4302533.4407949/1‑94 (MQ=60)

                                                                CGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTG                               <  SRR4302533.1357606/94‑1 (MQ=60)

                                                                 GCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGT                              >  SRR4302533.1003926/1‑94 (MQ=60)

                                                                  CCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTT                             <  SRR4302533.4921540/94‑1 (MQ=60)

                                                                  CCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTT                             >  SRR4302533.4036450/1‑94 (MQ=60)

                                                                  CCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTT                             >  SRR4302533.4179226/1‑94 (MQ=60)

                                                                   CAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTC                            >  SRR4302533.1932378/1‑94 (MQ=60)

                                                                   CAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTC                            >  SRR4302533.637217/1‑94 (MQ=60)

                                                                   CAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTC                            >  SRR4302533.728978/1‑94 (MQ=60)

                                                                   CAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTC                            >  SRR4302533.637218/1‑94 (MQ=60)

                                                                    AATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCC                           >  SRR4302533.1633556/1‑94 (MQ=60)

                                                                    AATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCC                           <  SRR4302533.82542/94‑1 (MQ=60)

                                                                    AATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCC                           >  SRR4302533.4883347/1‑94 (MQ=60)

                                                                     ATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCA                          >  SRR4302533.1373026/1‑94 (MQ=60)

                                                                      TGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAG                         <  SRR4302533.6029134/94‑1 (MQ=60)

                                                                      TGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAG                         >  SRR4302533.1149532/1‑94 (MQ=60)

                                                                       GTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGG                        <  SRR4302533.6210468/94‑1 (MQ=60)

                                                                         GCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAA                      <  SRR4302533.5803200/94‑1 (MQ=60)

                                                                         GCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAA                      <  SRR4302533.207679/94‑1 (MQ=60)

                                                                          CACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAT                     >  SRR4302533.6196882/1‑94 (MQ=60)

                                                                           ACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATT                    <  SRR4302533.2165517/94‑1 (MQ=60)

                                                                            CCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTT                   >  SRR4302533.4717559/1‑94 (MQ=60)

                                                                            CCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTT                   <  SRR4302533.727408/94‑1 (MQ=60)

                                                                             CGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTG                  >  SRR4302533.1369706/1‑94 (MQ=60)

                                                                             CGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTG                  >  SRR4302533.6232689/1‑94 (MQ=60)

                                                                              GCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGT                 <  SRR4302533.2001148/94‑1 (MQ=60)

                                                                              GCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGT                 >  SRR4302533.5116090/1‑94 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTTA               >  SRR4302533.5514204/1‑94 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               <  SRR4302533.6116739/94‑1 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               <  SRR4302533.480145/94‑1 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               >  SRR4302533.2783422/1‑94 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               <  SRR4302533.1840592/94‑1 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               >  SRR4302533.2898632/1‑94 (MQ=60)

                                                                                  TGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAA             >  SRR4302533.1587027/1‑94 (MQ=60)

                                                                                   GAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAA            <  SRR4302533.1827926/94‑1 (MQ=60)

                                                                                   GAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAA            >  SRR4302533.5314108/1‑94 (MQ=60)

                                                                                    AAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAA           <  SRR4302533.932484/94‑1 (MQ=60)

                                                                                     AGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAA          <  SRR4302533.4535709/94‑1 (MQ=60)

                                                                                     AGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAA          <  SRR4302533.2180890/94‑1 (MQ=60)

                                                                                      GAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAAC         <  SRR4302533.3386635/94‑1 (MQ=60)

                                                                                      GAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAAC         <  SRR4302533.614280/94‑1 (MQ=60)

                                                                                       AACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTTCCATTCAGTGTTCCAGGAATTTGTCAAAAAACA        <  SRR4302533.612479/94‑1 (MQ=60)

                                                                                       AACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACA        <  SRR4302533.2732987/94‑1 (MQ=60)

                                                                                        ACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACAT       <  SRR4302533.4893873/94‑1 (MQ=60)

                                                                                         CCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATG      >  SRR4302533.2010777/1‑94 (MQ=60)

                                                                                          CACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGC     <  SRR4302533.3471065/94‑1 (MQ=60)

                                                                                           ACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCG    <  SRR4302533.2094501/94‑1 (MQ=60)

                                                                                           ACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCG    <  SRR4302533.4268025/94‑1 (MQ=60)

                                                                                           ACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCG    <  SRR4302533.3694877/94‑1 (MQ=60)

                                                                                            CGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCGA   <  SRR4302533.3678512/94‑1 (MQ=60)

                                                                                             GGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCGAC  <  SRR4302533.3230399/94‑1 (MQ=60)

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATGCGAC  >  NC_000913/4032234‑4032420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`