Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,060,112 |
A→G |
Y96C (TAT→TGT) |
yihN → |
putative resistance protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,060,112 | 0 | A | G | 100.0%
| 781.6
/ NA
| 247 | Y96C (TAT→TGT) | yihN | putative resistance protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (134/113); total (134/113) |
Only 100 of 254 total aligned reads displayed.
TTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG > NC_000913/4060022‑4060201
|
ttGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGtt < 2:3697142/93‑1 (MQ=255)
ttGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACCCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGtt > 1:3389732/1‑93 (MQ=255)
tGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTg > 2:1928160/1‑93 (MQ=255)
tGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTg < 1:2762571/93‑1 (MQ=255)
gCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgg < 1:5192874/93‑1 (MQ=255)
cGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgggg < 2:4197630/93‑1 (MQ=255)
cGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTgggg > 2:5619661/1‑93 (MQ=255)
gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc > 2:951096/1‑93 (MQ=255)
gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc > 2:5489769/1‑93 (MQ=255)
gATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGc > 2:600833/1‑93 (MQ=255)
aTAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCa > 2:1740167/1‑93 (MQ=255)
tAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCAt > 2:1636878/1‑93 (MQ=255)
aaaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATc < 2:6188098/93‑1 (MQ=255)
aaCTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATcc > 2:2932678/1‑93 (MQ=255)
tACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCctct > 2:1956012/1‑93 (MQ=255)
aCCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCtt < 1:5482555/93‑1 (MQ=255)
ccGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCttt < 2:3131205/93‑1 (MQ=255)
cgcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTc < 2:1045910/93‑1 (MQ=255)
cgcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTc < 2:3369791/93‑1 (MQ=255)
gcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCt > 1:3673127/1‑93 (MQ=255)
gcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCt > 2:1841119/1‑93 (MQ=255)
gcAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGACGGGGTGTTGGGGCATCCTCTTTGTCt > 2:6284605/1‑93 (MQ=255)
cAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTg > 2:3391339/1‑93 (MQ=255)
gATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTggg > 1:1513681/1‑93 (MQ=255)
aTACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgc < 2:3542751/93‑1 (MQ=255)
tACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGgcg > 1:10309/1‑93 (MQ=255)
cacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCt > 2:4983785/1‑93 (MQ=255)
cacCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCt < 1:237428/93‑1 (MQ=255)
acCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTa < 2:5788281/93‑1 (MQ=255)
cATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAtt < 2:1597959/93‑1 (MQ=255)
cATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAtt < 2:4380320/93‑1 (MQ=255)
gTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTgg < 1:1193528/93‑1 (MQ=255)
tCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGc < 1:2965640/93‑1 (MQ=255)
tCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGc < 2:2982993/93‑1 (MQ=255)
cATTCTCCCTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCg < 2:2316127/93‑1 (MQ=255)
cATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCg < 2:2050365/93‑1 (MQ=255)
cATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCg > 2:2175803/1‑93 (MQ=255)
ttCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGtt > 2:266756/1‑93 (MQ=255)
ttCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGtt > 2:4838430/1‑93 (MQ=255)
ttCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGtt > 2:3227805/1‑93 (MQ=255)
ctcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTAc < 2:4572454/93‑1 (MQ=255)
ctcactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTAc < 1:6140164/93‑1 (MQ=255)
cactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACtt < 1:4720687/93‑1 (MQ=255)
cactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACtt > 1:2652748/1‑93 (MQ=255)
cactcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACtt < 2:25948/93‑1 (MQ=255)
actcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTg > 1:665338/1‑93 (MQ=255)
ctcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGc > 2:1231141/1‑93 (MQ=255)
ctcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGc > 1:1793385/1‑93 (MQ=255)
ctcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGc > 1:3502700/1‑93 (MQ=255)
tcaTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCg > 1:4201953/1‑93 (MQ=255)
caTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGa > 1:1980601/1‑93 (MQ=255)
caTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGa > 1:2682088/1‑93 (MQ=255)
aTTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGAc < 1:1609160/93‑1 (MQ=255)
ttGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACa < 2:868123/93‑1 (MQ=255)
ttGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACa > 2:2233719/1‑93 (MQ=255)
ttGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACa > 1:172896/1‑93 (MQ=255)
gCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatg > 2:4428080/1‑93 (MQ=255)
cGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatga < 1:392272/93‑1 (MQ=255)
cGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatga < 2:4698419/93‑1 (MQ=255)
gACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgat < 2:1529790/93‑1 (MQ=255)
aCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgatg > 1:922374/1‑93 (MQ=255)
aCAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACatgatg > 1:2058200/1‑93 (MQ=255)
cAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACAtgatga > 2:5223336/1‑93 (MQ=255)
cAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACAtgatga > 1:1652964/1‑93 (MQ=255)
cAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACAtgatga > 1:3975590/1‑93 (MQ=255)
aGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaa < 1:4843461/93‑1 (MQ=255)
aGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaa < 2:2396360/93‑1 (MQ=255)
ggATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGaat > 1:1087066/1‑92 (MQ=255)
ggATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAc < 2:1457668/93‑1 (MQ=255)
gATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACt > 1:1865908/1‑93 (MQ=255)
aTTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTg > 1:5796559/1‑93 (MQ=255)
ttACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTgg < 2:4124571/93‑1 (MQ=255)
tACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGc < 1:211922/93‑1 (MQ=255)
aCTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGcc < 1:4096021/93‑1 (MQ=255)
aCTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGcc < 2:3491/93‑1 (MQ=255)
cTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCg < 1:3219694/93‑1 (MQ=255)
tGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCgg > 1:3113725/1‑93 (MQ=255)
tGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCgg > 1:5648428/1‑93 (MQ=255)
gggTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGt > 1:5600341/1‑93 (MQ=255)
ggTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTc > 1:229073/1‑93 (MQ=255)
gtgtTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCt < 1:1159841/93‑1 (MQ=255)
tttATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGc < 2:3868231/93‑1 (MQ=255)
ttATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCt < 1:4632090/93‑1 (MQ=255)
tATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTc < 2:1672248/93‑1 (MQ=255)
aTTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCa > 1:2168581/1‑93 (MQ=255)
aTTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCa < 2:5406827/93‑1 (MQ=255)
tttGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCaa < 1:6275363/93‑1 (MQ=255)
ttGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAg < 2:5081177/93‑1 (MQ=255)
gacgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTc < 1:6043490/93‑1 (MQ=255)
gacgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTc > 1:3792980/1‑93 (MQ=255)
acgacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCg < 1:900140/93‑1 (MQ=255)
gacAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGt > 2:547348/1‑93 (MQ=255)
acAATGCCGGGGGGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTa > 2:1324902/1‑93 (MQ=255)
cAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTaa < 1:4535874/93‑1 (MQ=255)
tGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTc > 1:1332844/1‑93 (MQ=255)
tGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTc < 1:5275705/93‑1 (MQ=255)
cGGGGTGTTGGGGCATCCTCTTTTTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAt < 2:1877356/93‑1 (MQ=255)
cGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAt > 1:3630407/1‑93 (MQ=255)
ggggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAtt > 1:5513778/1‑93 (MQ=255)
gggTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTg < 2:683016/93‑1 (MQ=255)
|
TTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG > NC_000913/4060022‑4060201
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA > NC_000913/4060021‑4060205
|
TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTT > SRR4302533.1724746/1‑94 (MQ=60)
TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACCCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTT > SRR4302533.3410665/1‑94 (MQ=60)
TGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGG < SRR4302533.2779505/94‑1 (MQ=60)
TGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGG > SRR4302533.2694611/1‑94 (MQ=60)
GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG < SRR4302533.186941/94‑1 (MQ=60)
GCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGG < SRR4302533.5224196/94‑1 (MQ=60)
CGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGC > SRR4302533.4010308/1‑94 (MQ=60)
GATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCA > SRR4302533.2209014/1‑94 (MQ=60)
GATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCA > SRR4302533.5452578/1‑94 (MQ=60)
TAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATC < SRR4302533.2715847/94‑1 (MQ=60)
TAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATC > SRR4302533.687055/1‑94 (MQ=60)
CTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCT < SRR4302533.3690337/94‑1 (MQ=60)
ACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTT < SRR4302533.67552/94‑1 (MQ=60)
ACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTT < SRR4302533.5515605/94‑1 (MQ=60)
CCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTG < SRR4302533.1733228/94‑1 (MQ=60)
CGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGT > SRR4302533.1158912/1‑94 (MQ=60)
GCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTC < SRR4302533.4140724/94‑1 (MQ=60)
GCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTC < SRR4302533.6233733/94‑1 (MQ=60)
CGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCT > SRR4302533.2463987/1‑94 (MQ=60)
CGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCT > SRR4302533.3517811/1‑94 (MQ=60)
CGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCT > SRR4302533.2813530/1‑94 (MQ=60)
CGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCT > SRR4302533.3695699/1‑94 (MQ=60)
GCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTG > SRR4302533.5817545/1‑94 (MQ=60)
GCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTG > SRR4302533.3080720/1‑94 (MQ=60)
CAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGGATCCTCTTTGTCTGG > SRR4302533.2263521/1‑94 (MQ=60)
AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG < SRR4302533.5663873/94‑1 (MQ=60)
AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG > SRR4302533.1522803/1‑94 (MQ=60)
AGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGG < SRR4302533.393042/94‑1 (MQ=60)
ATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCG > SRR4302533.10394/1‑94 (MQ=60)
ATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCG > SRR4302533.1174019/1‑94 (MQ=60)
ATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCG < SRR4302533.4715112/94‑1 (MQ=60)
CACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTA > SRR4302533.4385349/1‑94 (MQ=60)
CACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTA < SRR4302533.238898/94‑1 (MQ=60)
CACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTA < SRR4302533.4608846/94‑1 (MQ=60)
ACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTAT > SRR4302533.3808726/1‑94 (MQ=60)
CCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATT < SRR4302533.2096625/94‑1 (MQ=60)
CCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATT < SRR4302533.92198/94‑1 (MQ=60)
ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG < SRR4302533.1446516/94‑1 (MQ=60)
ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG < SRR4302533.2031505/94‑1 (MQ=60)
ATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTG > SRR4302533.27729/1‑94 (MQ=60)
TGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGG > SRR4302533.982479/1‑94 (MQ=60)
TGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGG < SRR4302533.1334098/94‑1 (MQ=60)
GTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGC < SRR4302533.1200701/94‑1 (MQ=60)
TCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCG < SRR4302533.2983765/94‑1 (MQ=60)
CATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGT > SRR4302533.564980/1‑94 (MQ=60)
CTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACT < SRR4302533.3847292/94‑1 (MQ=60)
CTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACT < SRR4302533.6177146/94‑1 (MQ=60)
TCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTT > SRR4302533.2669045/1‑94 (MQ=60)
CACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTG > SRR4302533.669269/1‑94 (MQ=60)
CACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTG > SRR4302533.3949343/1‑94 (MQ=60)
CACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTG < SRR4302533.4749310/94‑1 (MQ=60)
ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC > SRR4302533.3524296/1‑94 (MQ=60)
ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC > SRR4302533.1090505/1‑94 (MQ=60)
ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC > SRR4302533.1804299/1‑94 (MQ=60)
ACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGC < SRR4302533.2177388/94‑1 (MQ=60)
CTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCG > SRR4302533.2120727/1‑94 (MQ=60)
CTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCG > SRR4302533.4227375/1‑94 (MQ=60)
CTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCG < SRR4302533.3177184/94‑1 (MQ=60)
TCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA > SRR4302533.5270757/1‑94 (MQ=60)
TCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA > SRR4302533.2698522/1‑94 (MQ=60)
TCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA > SRR4302533.1992726/1‑94 (MQ=60)
TCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGA > SRR4302533.3645066/1‑94 (MQ=60)
CATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGAC > SRR4302533.1245130/1‑94 (MQ=60)
ATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACA > SRR4302533.173987/1‑94 (MQ=60)
ATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACA < SRR4302533.1618920/94‑1 (MQ=60)
CGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGAT < SRR4302533.1868505/94‑1 (MQ=60)
CGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGAT < SRR4302533.394650/94‑1 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG > SRR4302533.5488910/1‑94 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG > SRR4302533.2070890/1‑94 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG < SRR4302533.5071091/94‑1 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG > SRR4302533.927789/1‑94 (MQ=60)
GACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATG > SRR4302533.1609683/1‑94 (MQ=60)
ACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGA > SRR4302533.3999792/1‑94 (MQ=60)
ACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGA > SRR4302533.1662975/1‑94 (MQ=60)
ACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGA > SRR4302533.3304845/1‑94 (MQ=60)
AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAT > SRR4302533.1093472/1‑94 (MQ=60)
AGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAAC < SRR4302533.4872816/94‑1 (MQ=60)
GGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACT > SRR4302533.1877289/1‑94 (MQ=60)
GATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTG > SRR4302533.5831580/1‑94 (MQ=60)
ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG > SRR4302533.5530592/1‑94 (MQ=60)
ATTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGG > SRR4302533.4728791/1‑94 (MQ=60)
TTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGC < SRR4302533.4483962/94‑1 (MQ=60)
TTACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTCGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGC > SRR4302533.3633208/1‑94 (MQ=60)
TACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCC < SRR4302533.213258/94‑1 (MQ=60)
ACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCG < SRR4302533.4120957/94‑1 (MQ=60)
ACTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCG > SRR4302533.1632294/1‑94 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG > SRR4302533.3132875/1‑94 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG < SRR4302533.1124121/94‑1 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG > SRR4302533.1606404/1‑94 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG > SRR4302533.5947730/1‑94 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG > SRR4302533.5682576/1‑94 (MQ=60)
CTGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGG < SRR4302533.3239546/94‑1 (MQ=60)
TGGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGT > SRR4302533.5634178/1‑94 (MQ=60)
GGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTC > SRR4302533.2379246/1‑94 (MQ=60)
GGGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTC > SRR4302533.230494/1‑94 (MQ=60)
GGTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCT < SRR4302533.1916057/94‑1 (MQ=60)
GTGTTTATTTGACGACAATGCTGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTT < SRR4302533.3667761/94‑1 (MQ=60)
GTGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTT < SRR4302533.1166800/94‑1 (MQ=60)
TGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTG < SRR4302533.6337136/94‑1 (MQ=60)
TGTTTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTG > SRR4302533.5978756/1‑94 (MQ=60)
TTATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTC < SRR4302533.4660161/94‑1 (MQ=60)
TATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCA < SRR4302533.5596253/94‑1 (MQ=60)
TATTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCA > SRR4302533.2181920/1‑94 (MQ=60)
TTTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAG < SRR4302533.6312837/94‑1 (MQ=60)
TTGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGT < SRR4302533.4022109/94‑1 (MQ=60)
TGACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTC > SRR4302533.3816196/1‑94 (MQ=60)
GACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCG < SRR4302533.6080105/94‑1 (MQ=60)
ACGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGG < SRR4302533.905421/94‑1 (MQ=60)
CGACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGT > SRR4302533.2055573/1‑94 (MQ=60)
ACAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAA < SRR4302533.6268478/94‑1 (MQ=60)
CAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAG < SRR4302533.4563338/94‑1 (MQ=60)
CAATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAG < SRR4302533.1755979/94‑1 (MQ=60)
ATGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTC > SRR4302533.1340843/1‑94 (MQ=60)
TGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCG > SRR4302533.6122181/1‑94 (MQ=60)
TGCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCG < SRR4302533.5307336/94‑1 (MQ=60)
GCCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGA > SRR4302533.3077964/1‑94 (MQ=60)
CCGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAT > SRR4302533.3652742/1‑94 (MQ=60)
CGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATT > SRR4302533.5547064/1‑94 (MQ=60)
CGGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGAAT > SRR4302533.5521804/1‑94 (MQ=60)
GGGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTG > SRR4302533.3391922/1‑94 (MQ=60)
GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG < SRR4302533.2607963/94‑1 (MQ=60)
GGGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGG > SRR4302533.4875835/1‑94 (MQ=60)
GGTGTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGG < SRR4302533.4836609/94‑1 (MQ=60)
GTTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA < SRR4302533.2034802/94‑1 (MQ=60)
|
TTTGCCGATAAACTACCGCGCAGATACACCATGTCATTCTCACTCATTGCGACAGGATTACTGGGTGTTTATTTGACGACAATGCCGGGGTATTGGGGCATCCTCTTTGTCTGGGCGCTATTTGGCGTTACTTGCGACATGATGAACTGGCCGGTCTTGCTCAAGTCGGTAAGTCGATTGGGCAA > NC_000913/4060021‑4060205
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
