Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,063,840 |
C→T |
G312D (GGC→GAC) |
b3877 ← |
putative permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,063,840 | 0 | C | T | 100.0%
| 833.9
/ NA
| 229 | G312D (GGC→GAC) | b3877 | putative permease |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (106/123); total (106/123) |
Only 100 of 237 total aligned reads displayed.
AACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCC > NC_000913/4063750‑4063929
|
aaCGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGccgtcg > 1:5813584/1‑93 (MQ=255)
gCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGata < 1:1016082/93‑1 (MQ=255)
gCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGata > 1:2225589/1‑93 (MQ=255)
gCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGata > 2:6030643/1‑93 (MQ=255)
caggcaggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGAtata > 1:6155475/1‑93 (MQ=255)
ggcaggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATaaa > 1:1271768/1‑93 (MQ=255)
ggcaggAGAACGCCACGAAGCTCACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATaaa < 1:4828252/93‑1 (MQ=255)
gcaggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAAc < 1:2672314/93‑1 (MQ=255)
caggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACt > 2:5183299/1‑93 (MQ=255)
caggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACt < 1:5598694/93‑1 (MQ=255)
aggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACtt < 2:6253024/93‑1 (MQ=255)
ggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGCGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATCAACttt > 2:3521735/1‑93 (MQ=255)
ggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGCTATAAACttt > 2:3923002/1‑93 (MQ=255)
ggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACttt < 2:5322279/93‑1 (MQ=255)
ggAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACttt > 2:3734319/1‑93 (MQ=255)
gagaACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTttc < 1:4973556/93‑1 (MQ=255)
gagaACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTttc > 2:916231/1‑93 (MQ=255)
agaACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTttct < 2:3090160/93‑1 (MQ=255)
aCGCCACGAAGCTTACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCTCCCAAATCAGCAGGCCGTCGATATAAACTTtcttct < 2:4368768/93‑1 (MQ=255)
cGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTcttctt < 1:5335095/93‑1 (MQ=255)
gCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTg < 1:5008193/93‑1 (MQ=255)
gCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTg < 1:3849817/93‑1 (MQ=255)
ccACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGc > 2:878985/1‑93 (MQ=255)
gAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCaaa > 1:1191322/1‑93 (MQ=255)
aaGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCaaaa < 2:3096647/93‑1 (MQ=255)
aaGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCaaaa > 1:2943271/1‑93 (MQ=255)
aGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAAc > 1:553253/1‑93 (MQ=255)
gCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACg > 2:1267551/1‑93 (MQ=255)
tGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTc > 2:3349161/1‑93 (MQ=255)
tGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTc > 1:667137/1‑93 (MQ=255)
tGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTc > 2:5615794/1‑93 (MQ=255)
gACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTct < 1:1728492/93‑1 (MQ=255)
gACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTct > 2:4865419/1‑93 (MQ=255)
aCCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTctg < 2:1597367/93‑1 (MQ=255)
aCCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTctg < 2:1491643/93‑1 (MQ=255)
aCCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTctg < 2:1211270/93‑1 (MQ=255)
aaCCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTctgactg > 1:3621736/1‑93 (MQ=255)
aaCCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTctgactg < 1:6233048/93‑1 (MQ=255)
aCCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTctgactga < 2:5659752/93‑1 (MQ=255)
aCCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTctgactga < 2:3119558/93‑1 (MQ=255)
cgccgccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGagg < 1:5248542/93‑1 (MQ=255)
cgccgccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGagg < 1:947234/93‑1 (MQ=255)
cgccgccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGagg < 1:5896726/93‑1 (MQ=255)
cgccgccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGagg < 2:650261/93‑1 (MQ=255)
gccgccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGaggc < 1:354212/93‑1 (MQ=255)
cgccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGaggcag < 1:2765919/93‑1 (MQ=255)
gccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGaggcagg < 2:4180613/93‑1 (MQ=255)
gccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGaggcagg > 1:4343659/1‑93 (MQ=255)
gccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGaggcagg < 1:1943675/93‑1 (MQ=255)
ccgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGaggcaggc > 1:2581481/1‑93 (MQ=255)
cgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAggcaggca > 2:445779/1‑93 (MQ=255)
cgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAggcaggca > 2:2312082/1‑93 (MQ=255)
cgAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAggcaggca > 2:1195754/1‑93 (MQ=255)
aagaaATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATc > 1:6004954/1‑93 (MQ=255)
aagaaATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATc > 1:3280639/1‑93 (MQ=255)
agaaATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCAGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCa > 1:4441476/1‑93 (MQ=255)
aaaTAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAgg < 2:2499238/93‑1 (MQ=255)
aaTAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGa < 2:3439330/93‑1 (MQ=255)
aaTAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGa < 1:20890/93‑1 (MQ=255)
aTAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGaa > 2:2763131/1‑93 (MQ=255)
tAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAAt > 2:4651391/1‑93 (MQ=255)
aGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATa < 2:4576342/93‑1 (MQ=255)
gTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATAc < 2:3999740/93‑1 (MQ=255)
gTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATAc < 2:3562446/93‑1 (MQ=255)
gAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGcc < 2:557054/93‑1 (MQ=255)
gAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGcc < 2:5117039/93‑1 (MQ=255)
aGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCg < 1:2349599/93‑1 (MQ=255)
gCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGa < 1:5962940/93‑1 (MQ=255)
aGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAATCTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATg < 2:1998724/93‑1 (MQ=255)
aGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATg > 2:4118867/1‑93 (MQ=255)
gATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGa < 1:870764/93‑1 (MQ=255)
gCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAAt < 1:2752711/93‑1 (MQ=255)
ccccAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAAt < 2:2433456/92‑1 (MQ=255)
cccAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATa > 1:2813826/1‑93 (MQ=255)
ccAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATAc > 1:3066094/1‑93 (MQ=255)
ccAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATAc > 2:5734201/1‑93 (MQ=255)
ccAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATAc < 2:5869505/93‑1 (MQ=255)
ccAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATAc < 1:4077268/93‑1 (MQ=255)
cAGCACCCAAATCAGCAGGCCATCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACa > 1:2987763/1‑93 (MQ=255)
aGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAg > 1:187842/1‑93 (MQ=255)
aGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAg < 1:4145459/93‑1 (MQ=255)
gCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGc < 1:5693249/93‑1 (MQ=255)
cACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGcc > 2:1851604/1‑93 (MQ=255)
cACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGcc > 2:2277683/1‑93 (MQ=255)
aCCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGccc > 1:486193/1‑93 (MQ=255)
ccAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCAt < 2:4220785/93‑1 (MQ=255)
aaaTCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGc < 1:972436/93‑1 (MQ=255)
aaTCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCt < 1:2620765/93‑1 (MQ=255)
aaTCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCt > 2:6159110/1‑93 (MQ=255)
aaTCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCt > 1:3735269/1‑93 (MQ=255)
aTCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTg < 2:5367040/93‑1 (MQ=255)
tCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGa > 2:2371011/1‑93 (MQ=255)
tCAGCAAGCCGTCGATGTGAACTTACTACAAGCCAAAACAACTGACTGAGGCCGGCATCAGGAATACGCCGATGAAAATACAGCCGATGCTGa < 2:6309647/93‑1 (MQ=255)
cagcagGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGaa < 1:5052189/93‑1 (MQ=255)
agcagGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGaaa > 2:3506700/1‑93 (MQ=255)
agcagGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGaaa < 2:3205482/93‑1 (MQ=255)
gcagGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGaaaa < 1:5189530/93‑1 (MQ=255)
gcagGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGaaaa > 1:4310231/1‑93 (MQ=255)
ggCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATc > 2:1813054/1‑93 (MQ=255)
ccgtcgATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATccc > 2:5996967/1‑93 (MQ=255)
|
AACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCC > NC_000913/4063750‑4063929
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCATAT > NC_000913/4063748‑4063933
|
AGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTC > SRR4302533.668634/1‑94 (MQ=60)
GAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCG < SRR4302533.274020/94‑1 (MQ=60)
GAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCG > SRR4302533.5848696/1‑94 (MQ=60)
GAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCG > SRR4302533.5139202/1‑94 (MQ=60)
CAACGCCACGCAGGAGAACGCCACGAACCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCCCCCAAATCAGCAGGCCGTCG < SRR4302533.5374819/94‑1 (MQ=60)
AAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCG < SRR4302533.5191757/94‑1 (MQ=60)
CGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATA > SRR4302533.2239328/1‑94 (MQ=60)
GCCAGGCAGGAGACCGCCACGAAGCTGACCGACCCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATAT < SRR4302533.2306262/94‑1 (MQ=60)
GCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATAT < SRR4302533.1022055/94‑1 (MQ=60)
GCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATAT < SRR4302533.6212686/94‑1 (MQ=60)
CCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATA > SRR4302533.5409252/1‑94 (MQ=60)
CCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATA > SRR4302533.6192508/1‑94 (MQ=60)
AGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAA > SRR4302533.1691134/1‑94 (MQ=60)
AGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAA > SRR4302533.1279375/1‑94 (MQ=60)
GGCAGGAGAACGCCACGAAGCTCACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAAC < SRR4302533.4857514/94‑1 (MQ=60)
GCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACT < SRR4302533.2688709/94‑1 (MQ=60)
CAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTT < SRR4302533.5632519/94‑1 (MQ=60)
CAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTT > SRR4302533.2771495/1‑94 (MQ=60)
AGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTT > SRR4302533.2060769/1‑94 (MQ=60)
AGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTT > SRR4302533.3603509/1‑94 (MQ=60)
GAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCT < SRR4302533.4964601/94‑1 (MQ=60)
GAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCT > SRR4302533.4171629/1‑94 (MQ=60)
GAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCT < SRR4302533.5003712/94‑1 (MQ=60)
AGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTT < SRR4302533.5607221/94‑1 (MQ=60)
AGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTT < SRR4302533.3766270/94‑1 (MQ=60)
ACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTT < SRR4302533.3708118/94‑1 (MQ=60)
CGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTG < SRR4302533.5367074/94‑1 (MQ=60)
CGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTG < SRR4302533.5106785/94‑1 (MQ=60)
GCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGC < SRR4302533.3873326/94‑1 (MQ=60)
GCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGC < SRR4302533.5038540/94‑1 (MQ=60)
CCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCC > SRR4302533.6285731/1‑94 (MQ=60)
CACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCA > SRR4302533.5235269/1‑94 (MQ=60)
CGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAA > SRR4302533.1198480/1‑94 (MQ=60)
GAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAA > SRR4302533.6261207/1‑94 (MQ=60)
GAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAA > SRR4302533.2961238/1‑94 (MQ=60)
AAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAAC > SRR4302533.4317429/1‑94 (MQ=60)
AAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAAC > SRR4302533.556533/1‑94 (MQ=60)
CTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTC > SRR4302533.671079/1‑94 (MQ=60)
TGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCT < SRR4302533.2742527/94‑1 (MQ=60)
TGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCT < SRR4302533.2993284/94‑1 (MQ=60)
GACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTG < SRR4302533.1738977/94‑1 (MQ=60)
CGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACT < SRR4302533.4993191/94‑1 (MQ=60)
GAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAACACGTCTGACTG > SRR4302533.3644022/1‑94 (MQ=60)
AACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGA < SRR4302533.6270371/94‑1 (MQ=60)
CCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGG < SRR4302533.59486/94‑1 (MQ=60)
CGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGC < SRR4302533.5280091/94‑1 (MQ=60)
CGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGC < SRR4302533.5932334/94‑1 (MQ=60)
CGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGC < SRR4302533.952803/94‑1 (MQ=60)
GCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCA > SRR4302533.2450439/1‑94 (MQ=60)
GCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCA < SRR4302533.356372/94‑1 (MQ=60)
CCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACATCTGACTGAGGCAG > SRR4302533.571566/1‑94 (MQ=60)
CGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGG > SRR4302533.4369835/1‑94 (MQ=60)
CGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGG > SRR4302533.4806879/1‑94 (MQ=60)
CGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGG < SRR4302533.2782876/94‑1 (MQ=60)
GCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGC > SRR4302533.2597361/1‑94 (MQ=60)
GCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGC < SRR4302533.1955532/94‑1 (MQ=60)
CCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAGCTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCA > SRR4302533.2445341/1‑94 (MQ=60)
CCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCA > SRR4302533.971225/1‑94 (MQ=60)
GAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATC > SRR4302533.3300891/1‑94 (MQ=60)
GAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATC > SRR4302533.6041338/1‑94 (MQ=60)
AAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCA < SRR4302533.5007844/94‑1 (MQ=60)
AAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCA < SRR4302533.4435180/94‑1 (MQ=60)
AAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCAGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCA > SRR4302533.4468329/1‑94 (MQ=60)
AGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAG > SRR4302533.3009600/1‑94 (MQ=60)
GAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGG < SRR4302533.5944157/94‑1 (MQ=60)
GAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGG > SRR4302533.5839093/1‑94 (MQ=60)
AATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAA < SRR4302533.21029/94‑1 (MQ=60)
ATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAAT < SRR4302533.1911997/94‑1 (MQ=60)
AGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATAC < SRR4302533.125658/94‑1 (MQ=60)
GTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACG < SRR4302533.1115474/94‑1 (MQ=60)
TTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGC > SRR4302533.4362377/1‑94 (MQ=60)
TGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCC < SRR4302533.5082209/94‑1 (MQ=60)
AGCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGA < SRR4302533.2364134/94‑1 (MQ=60)
GCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGAT < SRR4302533.5999014/94‑1 (MQ=60)
GCAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGAT < SRR4302533.2883830/94‑1 (MQ=60)
CAGATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATG > SRR4302533.2159434/1‑94 (MQ=60)
CAGATCGCCCAGAACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATG > SRR4302533.2819697/1‑94 (MQ=60)
GATCGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAA < SRR4302533.875873/94‑1 (MQ=60)
CGCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAAT > SRR4302533.686780/1‑94 (MQ=60)
GCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATA > SRR4302533.2831145/1‑94 (MQ=60)
GCCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATA < SRR4302533.2769591/94‑1 (MQ=60)
CCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATAC > SRR4302533.6104081/1‑94 (MQ=60)
CCCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATAC > SRR4302533.3084926/1‑94 (MQ=60)
CCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACA > SRR4302533.3313601/1‑94 (MQ=60)
CCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACA < SRR4302533.4169055/94‑1 (MQ=60)
CCAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACA < SRR4302533.4102089/94‑1 (MQ=60)
CCAGCACCCAAATCAGCAGGCCATCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACA > SRR4302533.3006040/1‑94 (MQ=60)
CAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAG > SRR4302533.189010/1‑94 (MQ=60)
CAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAG > SRR4302533.2671549/1‑94 (MQ=60)
CAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAG > SRR4302533.3061224/1‑94 (MQ=60)
CAGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGACGATGAAAATACAG > SRR4302533.4534106/1‑94 (MQ=60)
AGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGC < SRR4302533.587651/94‑1 (MQ=60)
AGCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGC < SRR4302533.4170582/94‑1 (MQ=60)
GCACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCC < SRR4302533.5727630/94‑1 (MQ=60)
CACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCC < SRR4302533.6032562/94‑1 (MQ=60)
CACCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCC > SRR4302533.489102/1‑94 (MQ=60)
CCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCAT < SRR4302533.5524538/94‑1 (MQ=60)
CCCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCAT < SRR4302533.4878844/94‑1 (MQ=60)
CCAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGATTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATG < SRR4302533.3400043/94‑1 (MQ=60)
CAAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGC < SRR4302533.3826936/94‑1 (MQ=60)
AAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCT < SRR4302533.978145/94‑1 (MQ=60)
AAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCT < SRR4302533.1879242/94‑1 (MQ=60)
AAATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCT > SRR4302533.3758184/1‑94 (MQ=60)
AATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTG < SRR4302533.2636851/94‑1 (MQ=60)
AATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTG < SRR4302533.2819640/94‑1 (MQ=60)
ATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCCTGCTGA > SRR4302533.4010728/1‑94 (MQ=60)
ATCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGA > SRR4302533.2651925/1‑94 (MQ=60)
TCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAA < SRR4302533.1699841/94‑1 (MQ=60)
TCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAA > SRR4302533.688094/1‑94 (MQ=60)
TCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAA < SRR4302533.1982683/94‑1 (MQ=60)
TCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAA > SRR4302533.878698/1‑94 (MQ=60)
TCAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAA < SRR4302533.5346580/94‑1 (MQ=60)
CAGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAA < SRR4302533.5082737/94‑1 (MQ=60)
AGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAA < SRR4302533.5635940/94‑1 (MQ=60)
AGCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAA > SRR4302533.4336177/1‑94 (MQ=60)
GCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAA < SRR4302533.2619140/94‑1 (MQ=60)
GCAGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAA < SRR4302533.5220844/94‑1 (MQ=60)
AGGCCGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAACAATC > SRR4302533.3223417/1‑94 (MQ=60)
CGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATANAGCCCATGCTGAAAANTNCNAT > SRR4302533.2962701/1‑94 (MQ=60)
CGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCAT < SRR4302533.2677292/94‑1 (MQ=60)
CGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCAT < SRR4302533.1576083/94‑1 (MQ=60)
CGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCAT > SRR4302533.4941379/1‑94 (MQ=60)
CGTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTCAGGCAGACATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCAT < SRR4302533.1092161/94‑1 (MQ=60)
GTCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCATA > SRR4302533.2908648/1‑94 (MQ=60)
TCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCATAT > SRR4302533.2193069/1‑94 (MQ=60)
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AGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGCCGATGAAAATACAGCCCATGCTGAAAAATCCCATAT > NC_000913/4063748‑4063933
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
