Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,126,464	A→G	V71V (GTA→GTG)	metB →	cystathionine gamma‑synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,126,464	0	A	G	100.0%	811.6 / NA	248	V71V (GTA→GTG)	metB	cystathionine gamma‑synthase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (124/124); total (124/124)

Only 100 of 265 total aligned reads displayed.

GCGCGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTACTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTA  >  NC_000913/4126374‑4126553

 cgcgcgcATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGtgctt                                                                                        >  2:3271722/1‑93 (MQ=255)

  gcgcgcATGTTTTCTCGGCTCGCGGCAACCCAACGCGCGATGTGGTTCAGTGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGtgctta                                                                                       <  1:4442816/93‑1 (MQ=255)

  gcgcgcATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGtgctta                                                                                       <  2:6001136/93‑1 (MQ=255)

   cgcgcATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGtgcttac                                                                                      <  2:2517134/93‑1 (MQ=255)

   cgcgcATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGtgcttac                                                                                      >  1:6059019/1‑93 (MQ=255)

      gcATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTaa                                                                                   <  2:475360/93‑1 (MQ=255)

       cATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAAt                                                                                  >  1:1112601/1‑93 (MQ=255)

       cATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAAt                                                                                  >  1:3731046/1‑93 (MQ=255)

         tGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAc                                                                                >  1:1287281/1‑93 (MQ=255)

         tGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAc                                                                                <  2:4692677/93‑1 (MQ=255)

         tGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAc                                                                                >  1:4756025/1‑93 (MQ=255)

           aTTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCg                                                                              <  1:4254146/93‑1 (MQ=255)

           aTTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCg                                                                              <  1:3327134/93‑1 (MQ=255)

             tACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGc                                                                            <  2:5781603/93‑1 (MQ=255)

             tACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGc                                                                            <  1:5032149/93‑1 (MQ=255)

               cTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCAt                                                                          <  2:920779/93‑1 (MQ=255)

                tcgcgtcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATg                                                                         >  1:990105/1‑93 (MQ=255)

                  gcgtcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTc                                                                       >  2:4597029/1‑93 (MQ=255)

                   cgtcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTcc                                                                      <  1:2920429/93‑1 (MQ=255)

                   cgtcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTcc                                                                      <  2:4758208/93‑1 (MQ=255)

                   cgtcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTcc                                                                      <  1:2628293/93‑1 (MQ=255)

                    gtcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCcg                                                                     >  1:837275/1‑93 (MQ=255)

                     tcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCcgc                                                                    >  2:3428184/1‑93 (MQ=255)

                     tcgcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCcgc                                                                    >  1:1929198/1‑93 (MQ=255)

                     tcgcgGCAACACAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCcgg                                                                    >  1:1083332/1‑92 (MQ=255)

                       gcgGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGa                                                                  >  2:5828524/1‑93 (MQ=255)

                         ggCGACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGAtt                                                                <  2:195585/93‑1 (MQ=255)

                          gCACCCCAGCGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTc                                                               <  2:1816366/93‑1 (MQ=255)

                          gCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTc                                                               <  2:341161/93‑1 (MQ=255)

                          gCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTc                                                               >  1:1709604/1‑93 (MQ=255)

                          gCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTc                                                               >  2:1447387/1‑93 (MQ=255)

                          gCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTc                                                               <  2:4043903/93‑1 (MQ=255)

                            aaCCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGGAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCAc                                                             >  1:2440094/1‑93 (MQ=255)

                            aaCCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCAc                                                             <  1:3299054/93‑1 (MQ=255)

                            aaCCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCAc                                                             >  1:3178830/1‑93 (MQ=255)

                             aCCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCAcc                                                            <  2:3870244/93‑1 (MQ=255)

                              cccAACGCGCGACGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCt                                                           >  1:5234279/1‑93 (MQ=255)

                               ccAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTg                                                          <  1:72564/93‑1 (MQ=255)

                                cAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTgg                                                         >  1:461218/1‑93 (MQ=255)

                                 aaCGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGt                                                        >  2:521419/1‑93 (MQ=255)

                                 aaCGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGt                                                        <  1:5138829/93‑1 (MQ=255)

                                 aaCGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGt                                                        >  1:4476922/1‑93 (MQ=255)

                                   cgcgcgATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTaa                                                      <  1:1385351/93‑1 (MQ=255)

                                    gcgcgATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAAc                                                     <  2:5670106/93‑1 (MQ=255)

                                    gcgcgATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAAc                                                     >  1:2011285/1‑93 (MQ=255)

                                     cgcgATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACg                                                    <  1:2096660/93‑1 (MQ=255)

                                     cgcgATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACg                                                    <  2:2164168/93‑1 (MQ=255)

                                        gATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGAcc                                                 >  2:4185447/1‑93 (MQ=255)

                                        gATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGAcc                                                 >  2:6238469/1‑93 (MQ=255)

                                         aTGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCg                                                <  2:3381657/93‑1 (MQ=255)

                                            tgGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCt                                             >  1:2503700/1‑93 (MQ=255)

                                               ttCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCtttt                                          <  2:2973082/93‑1 (MQ=255)

                                                tCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCttttt                                         <  2:4875089/93‑1 (MQ=255)

                                                  aGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGa                                       <  1:1494080/93‑1 (MQ=255)

                                                   gCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGaa                                      >  1:3594052/1‑93 (MQ=255)

                                                   gCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGaa                                      <  1:3043082/93‑1 (MQ=255)

                                                   gCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGaa                                      <  1:3392843/93‑1 (MQ=255)

                                                    cGTGCGCTGGCAGAACTGGAAGGTGGTTCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGCCCGTCTTTTTGaaa                                     <  2:3232662/93‑1 (MQ=255)

                                                       gcgcTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCt                                  <  2:4382315/93‑1 (MQ=255)

                                                        cgcTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTg                                 <  2:2633539/93‑1 (MQ=255)

                                                         gcTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTgg                                <  1:4090251/93‑1 (MQ=255)

                                                           tGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCg                              >  2:2572853/1‑93 (MQ=255)

                                                           tGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCg                              <  2:1275133/93‑1 (MQ=255)

                                                           tGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCg                              >  2:2843736/1‑93 (MQ=255)

                                                           tGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCg                              >  2:5106916/1‑93 (MQ=255)

                                                            ggCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGa                             <  1:5329748/93‑1 (MQ=255)

                                                            ggCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGa                             <  2:2823918/93‑1 (MQ=255)

                                                            ggCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGa                             >  2:748059/1‑93 (MQ=255)

                                                              cAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATc                           >  1:4706729/1‑93 (MQ=255)

                                                                gAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATctg                         >  2:5510634/1‑93 (MQ=255)

                                                                gAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATctg                         <  1:4800882/93‑1 (MQ=255)

                                                                 aaCTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATctgc                        <  1:5431506/93‑1 (MQ=255)

                                                                  aCTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATctgct                       <  1:2797371/93‑1 (MQ=255)

                                                                   cTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATctgctg                      >  2:3769579/1‑93 (MQ=255)

                                                                    tGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTgg                     >  1:3986454/1‑93 (MQ=255)

                                                                    tGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTgg                     >  2:6128366/1‑93 (MQ=255)

                                                                     gtaaGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGCCTTTTTGAAACCTGGCGATCTGCTGGt                    >  2:1238430/3‑93 (MQ=255)

                                                                     ggAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACTTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGt                    <  2:2312646/93‑1 (MQ=255)

                                                                     ggAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGt                    >  2:2454076/1‑93 (MQ=255)

                                                                     ggAAGGGGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCCCCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGt                    <  2:1648622/93‑1 (MQ=255)

                                                                      gAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGtt                   >  1:4101238/1‑93 (MQ=255)

                                                                      gAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGtt                   >  2:3892543/1‑93 (MQ=255)

                                                                        aGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTgc                 <  2:534137/93‑1 (MQ=255)

                                                                         ggtggtGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTgcg                >  2:213062/1‑93 (MQ=255)

                                                                          gtggtgCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTgcgc               >  1:2578139/1‑93 (MQ=255)

                                                                           tggtgctggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGcgcc              <  1:3274438/93‑1 (MQ=255)

                                                                           tggtgctggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGcgcc              <  2:2437911/93‑1 (MQ=255)

                                                                           tggtgctggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGcgcc              <  1:5938490/93‑1 (MQ=255)

                                                                            ggtgctggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGcgccg             >  1:4738734/1‑93 (MQ=255)

                                                                             gtgctggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGcgccgc            <  1:2761235/93‑1 (MQ=255)

                                                                             gtgctggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGcgccgc            <  2:6177681/93‑1 (MQ=255)

                                                                                 tggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGa        >  1:881533/1‑93 (MQ=255)

                                                                                  ggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGAc       <  1:220108/93‑1 (MQ=255)

                                                                                  ggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGAc       <  2:5011310/93‑1 (MQ=255)

                                                                                  ggtgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGAc       >  2:1178681/1‑93 (MQ=255)

                                                                                    tgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTg     >  1:1795153/1‑93 (MQ=255)

                                                                                    tgcAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTg     >  1:6278452/1‑93 (MQ=255)

                                                                                      cAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCt   >  2:3181010/1‑93 (MQ=255)

                                                                                      cAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCt   >  1:4141971/1‑93 (MQ=255)

                                                                                       aGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTa  <  2:726356/93‑1 (MQ=255)

GCGCGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTACTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTA  >  NC_000913/4126374‑4126553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGCGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTACTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTACGG  >  NC_000913/4126373‑4126556

CGCGCGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCT                                                                                            <  SRR4302533.3771468/94‑1 (MQ=60)

CGCGCGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCT                                                                                            >  SRR4302533.5159458/1‑94 (MQ=60)

   GCGCGCATGTTTTCTCGGCTCGCGGCAACCCAACGCGCGATGTGGTTCAGTGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTAC                                                                                         <  SRR4302533.4469685/94‑1 (MQ=60)

   GCGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTAC                                                                                         >  SRR4302533.6095700/1‑94 (MQ=60)

    CGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACT                                                                                        >  SRR4302533.2603098/1‑94 (MQ=60)

      CGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAA                                                                                      >  SRR4302533.4024461/1‑94 (MQ=60)

       GCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAAT                                                                                     >  SRR4302533.3753932/1‑94 (MQ=60)

       GCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAAT                                                                                     >  SRR4302533.1119201/1‑94 (MQ=60)

         ATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAC                                                                                   >  SRR4302533.1295026/1‑94 (MQ=60)

         ATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAC                                                                                   >  SRR4302533.2944562/1‑94 (MQ=60)

         ATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAC                                                                                   <  SRR4302533.3379611/94‑1 (MQ=60)

         ATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAC                                                                                   >  SRR4302533.1117854/1‑94 (MQ=60)

         ATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAC                                                                                   <  SRR4302533.1800758/94‑1 (MQ=60)

         ATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAC                                                                                   >  SRR4302533.4784888/1‑94 (MQ=60)

         ATGATTACTCGCGTCGCGGCAACCAAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATAC                                                                                   >  SRR4302533.5126644/1‑94 (MQ=60)

          TGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACC                                                                                  >  SRR4302533.2708362/1‑94 (MQ=60)

          TGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACC                                                                                  <  SRR4302533.5404165/94‑1 (MQ=60)

           GATTGCTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCG                                                                                 <  SRR4302533.1259928/94‑1 (MQ=60)

           GATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCG                                                                                 <  SRR4302533.3635764/94‑1 (MQ=60)

            ATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGG                                                                                <  SRR4302533.4496867/94‑1 (MQ=60)

            ATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGG                                                                                <  SRR4302533.4279800/94‑1 (MQ=60)

            ATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGG                                                                                >  SRR4302533.3596167/1‑94 (MQ=60)

            ATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGG                                                                                <  SRR4302533.3347693/94‑1 (MQ=60)

              TACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCA                                                                              <  SRR4302533.5062637/94‑1 (MQ=60)

               ACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCAT                                                                             <  SRR4302533.239253/94‑1 (MQ=60)

                CTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATG                                                                            >  SRR4302533.4116461/1‑94 (MQ=60)

                CTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATG                                                                            >  SRR4302533.995897/1‑94 (MQ=60)

                CTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATG                                                                            <  SRR4302533.314426/94‑1 (MQ=60)

                 TCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGT                                                                           <  SRR4302533.1002075/94‑1 (MQ=60)

                  CGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTC                                                                          >  SRR4302533.4747033/1‑94 (MQ=60)

                    CGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCG                                                                        <  SRR4302533.2644443/94‑1 (MQ=60)

                    CGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCG                                                                        <  SRR4302533.2938321/94‑1 (MQ=60)

                    CGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCG                                                                        >  SRR4302533.4131112/1‑94 (MQ=60)

                    CGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCG                                                                        >  SRR4302533.4705206/1‑94 (MQ=60)

                    CGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCG                                                                        >  SRR4302533.842181/1‑94 (MQ=60)

                     GTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGC                                                                       >  SRR4302533.1940969/1‑94 (MQ=60)

                     GTCGCGGCAACACAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGG                                                                       >  SRR4302533.1089722/1‑94 (MQ=60)

                        GCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGAT                                                                    <  SRR4302533.4121026/94‑1 (MQ=60)

                          GGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTC                                                                  >  SRR4302533.1719964/1‑94 (MQ=60)

                           GCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCA                                                                 <  SRR4302533.4785864/94‑1 (MQ=60)

                           GCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTACGCGATTCA                                                                 >  SRR4302533.4200787/1‑94 (MQ=60)

                            CAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGGAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCAC                                                                >  SRR4302533.2455162/1‑94 (MQ=60)

                            CAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCAC                                                                >  SRR4302533.956386/1‑94 (MQ=60)

                            CAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCAC                                                                >  SRR4302533.3198383/1‑94 (MQ=60)

                             AACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACC                                                               <  SRR4302533.3319411/94‑1 (MQ=60)

                             AACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACC                                                               >  SRR4302533.3159296/1‑94 (MQ=60)

                              ACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCT                                                              <  SRR4302533.3338818/94‑1 (MQ=60)

                              ACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCT                                                              >  SRR4302533.541372/1‑94 (MQ=60)

                              ACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCT                                                              >  SRR4302533.2634662/1‑94 (MQ=60)

                              ACCCAACGCGCGACGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCT                                                              >  SRR4302533.5265755/1‑94 (MQ=60)

                               CCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTG                                                             <  SRR4302533.2157281/94‑1 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATCCCGGCATGTCCGCGATTCACCTGG                                                            <  SRR4302533.739795/94‑1 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGG                                                            <  SRR4302533.609295/94‑1 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGG                                                            >  SRR4302533.3345180/1‑94 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGG                                                            <  SRR4302533.6078037/94‑1 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGG                                                            >  SRR4302533.4222886/1‑94 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGG                                                            >  SRR4302533.4845116/1‑94 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGG                                                            <  SRR4302533.73030/94‑1 (MQ=60)

                                CCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGG                                                            >  SRR4302533.463969/1‑94 (MQ=60)

                                 CAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGT                                                           >  SRR4302533.4504004/1‑94 (MQ=60)

                                 CAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGT                                                           >  SRR4302533.1472301/1‑94 (MQ=60)

                                 CAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGT                                                           >  SRR4302533.2509607/1‑94 (MQ=60)

                                 CAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGT                                                           >  SRR4302533.280270/1‑94 (MQ=60)

                                  AACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTA                                                          <  SRR4302533.5169885/94‑1 (MQ=60)

                                  AACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTA                                                          >  SRR4302533.4829305/1‑94 (MQ=60)

                                   ACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCCCCTGGTAA                                                         <  SRR4302533.4771767/94‑1 (MQ=60)

                                    CGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAAC                                                        <  SRR4302533.1393688/94‑1 (MQ=60)

                                    CGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAAC                                                        >  SRR4302533.2023676/1‑94 (MQ=60)

                                     GCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACG                                                       >  SRR4302533.1986490/1‑94 (MQ=60)

                                      CGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGA                                                      <  SRR4302533.2109569/94‑1 (MQ=60)

                                       GCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGAC                                                     >  SRR4302533.842143/1‑94 (MQ=60)

                                         GATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCG                                                   >  SRR4302533.2797427/1‑94 (MQ=60)

                                          ATGTGGTTCAGCGTGCGCGGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGT                                                  <  SRR4302533.6262406/94‑1 (MQ=60)

                                            GTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCT                                                >  SRR4302533.1456213/1‑94 (MQ=60)

                                            GTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCT                                                >  SRR4302533.2519137/1‑94 (MQ=60)

                                             TGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTT                                               >  SRR4302533.1896161/1‑94 (MQ=60)

                                             TGGATAAGCGTTCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATTCGGGCATGTCCGCGATTCACCTGGTAACGACCGTCTT                                               <  SRR4302533.721009/94‑1 (MQ=60)

                                                TTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTT                                            <  SRR4302533.2525818/94‑1 (MQ=60)

                                                TTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTT                                            <  SRR4302533.5073940/94‑1 (MQ=60)

                                                 TCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTG                                           >  SRR4302533.2544786/1‑94 (MQ=60)

                                                   AGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAA                                         >  SRR4302533.3616166/1‑94 (MQ=60)

                                                   AGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAA                                         <  SRR4302533.1503086/94‑1 (MQ=60)

                                                   AGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAA                                         >  SRR4302533.3314771/1‑94 (MQ=60)

                                                   AGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAA                                         >  SRR4302533.870205/1‑94 (MQ=60)

                                                   AGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAA                                         >  SRR4302533.4546190/1‑94 (MQ=60)

                                                    GCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAA                                        <  SRR4302533.3061711/94‑1 (MQ=60)

                                                    GCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAA                                        <  SRR4302533.3413795/94‑1 (MQ=60)

                                                     CGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAAC                                       >  SRR4302533.4773858/1‑94 (MQ=60)

                                                     CGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAAC                                       >  SRR4302533.1157933/1‑94 (MQ=60)

                                                     CGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAAC                                       >  SRR4302533.1520962/1‑94 (MQ=60)

                                                      GTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACC                                      <  SRR4302533.675206/94‑1 (MQ=60)

                                                       TGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCT                                     <  SRR4302533.2375495/94‑1 (MQ=60)

                                                       TGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCT                                     <  SRR4302533.2840106/94‑1 (MQ=60)

                                                       TGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCT                                     <  SRR4302533.4091263/94‑1 (MQ=60)

                                                         CGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGG                                   >  SRR4302533.3582645/1‑94 (MQ=60)

                                                          GCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGC                                  <  SRR4302533.4115152/94‑1 (MQ=60)

                                                           CTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCG                                 >  SRR4302533.370024/1‑94 (MQ=60)

                                                            TGGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGA                                >  SRR4302533.5836044/1‑94 (MQ=60)

                                                             GGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGAT                               <  SRR4302533.5361692/94‑1 (MQ=60)

                                                             GGCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGAT                               <  SRR4302533.4351979/94‑1 (MQ=60)

                                                              GCAGAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATC                              >  SRR4302533.4735254/1‑94 (MQ=60)

                                                                 GAACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGC                           <  SRR4302533.4829962/94‑1 (MQ=60)

                                                                  AACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCT                          <  SRR4302533.5464215/94‑1 (MQ=60)

                                                                   ACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTG                         <  SRR4302533.4704230/94‑1 (MQ=60)

                                                                   ACTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTG                         <  SRR4302533.2814575/94‑1 (MQ=60)

                                                                    CTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGG                        >  SRR4302533.1543310/1‑94 (MQ=60)

                                                                    CTGGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGG                        >  SRR4302533.4010734/1‑94 (MQ=60)

                                                                      GGAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTT                      >  SRR4302533.4126195/1‑94 (MQ=60)

                                                                       GAAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGAGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTG                     <  SRR4302533.4352755/94‑1 (MQ=60)

                                                                        AAGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGC                    >  SRR4302533.864890/1‑94 (MQ=60)

                                                                         AGGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCG                   <  SRR4302533.2170427/94‑1 (MQ=60)

                                                                          GGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGC                  >  SRR4302533.2594005/1‑94 (MQ=60)

                                                                          GGTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGC                  >  SRR4302533.209499/1‑94 (MQ=60)

                                                                           GTGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCC                 >  SRR4302533.4591523/1‑94 (MQ=60)

                                                                            TGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCG                <  SRR4302533.5974395/94‑1 (MQ=60)

                                                                            TGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCG                <  SRR4302533.1907531/94‑1 (MQ=60)

                                                                            TGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCG                <  SRR4302533.3294654/94‑1 (MQ=60)

                                                                            TGGTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCG                >  SRR4302533.4767466/1‑94 (MQ=60)

                                                                              GTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCA              <  SRR4302533.2778161/94‑1 (MQ=60)

                                                                              GTGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCA              >  SRR4302533.1392093/1‑94 (MQ=60)

                                                                               TGCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCAC             >  SRR4302533.1948382/1‑94 (MQ=60)

                                                                                GCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACG            <  SRR4302533.324884/94‑1 (MQ=60)

                                                                                GCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACG            >  SRR4302533.5276305/1‑94 (MQ=60)

                                                                                GCTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACG            <  SRR4302533.3959992/94‑1 (MQ=60)

                                                                                 CTGGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGA           >  SRR4302533.886712/1‑94 (MQ=60)

                                                                                   GGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACT         <  SRR4302533.6232573/94‑1 (MQ=60)

                                                                                   GGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACT         <  SRR4302533.293026/94‑1 (MQ=60)

                                                                                   GGTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACT         <  SRR4302533.221484/94‑1 (MQ=60)

                                                                                    GTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTG        >  SRR4302533.1806079/1‑94 (MQ=60)

                                                                                    GTGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTG        >  SRR4302533.6315937/1‑94 (MQ=60)

                                                                                     TGCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGC       >  SRR4302533.5245563/1‑94 (MQ=60)

                                                                                      GCAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCT      >  SRR4302533.4167087/1‑94 (MQ=60)

                                                                                       CAGTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTA     >  SRR4302533.5246267/1‑94 (MQ=60)

                                                                                        AGTGCTTACTAATGCCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTAC    <  SRR4302533.3286115/94‑1 (MQ=60)

                                                                                         GTGCTTACTAATACCGGCATGTGCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTACG   <  SRR4302533.2693968/94‑1 (MQ=60)

                                                                                         GTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTACG   <  SRR4302533.4748112/94‑1 (MQ=60)

                                                                                         GTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTACG   <  SRR4302533.3878674/94‑1 (MQ=60)

                                                                                         GTGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTACG   <  SRR4302533.2266985/94‑1 (MQ=60)

                                                                                          TGCTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTACGG  >  SRR4302533.1408254/1‑94 (MQ=60)

CGCGCGCGCATGATTACTCGCGTCGCGGCAACCCAACGCGCGATGTGGTTCAGCGTGCGCTGGCAGAACTGGAAGGTGGTGCTGGTGCAGTACTTACTAATACCGGCATGTCCGCGATTCACCTGGTAACGACCGTCTTTTTGAAACCTGGCGATCTGCTGGTTGCGCCGCACGACTGCTACGG  >  NC_000913/4126373‑4126556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`