Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,128,355	A→G	H314R (CAC→CGC)	metL →	aspartokinase II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,128,355	0	A	G	100.0%	714.6 / NA	224	H314R (CAC→CGC)	metL	aspartokinase II
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/108); total (116/108)

Only 100 of 235 total aligned reads displayed.

AACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGC  >  NC_000913/4128265‑4128443

aaCTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCcgcg                                                                                        >  2:615322/1‑93 (MQ=255)

aaCTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCcgcg                                                                                        <  1:2845370/93‑1 (MQ=255)

 aCTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCga                                                                                       >  1:485726/1‑93 (MQ=255)

 aCTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCga                                                                                       <  1:5652924/93‑1 (MQ=255)

  cTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCgat                                                                                      <  1:150086/93‑1 (MQ=255)

     cgcTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCgatgat                                                                                   <  2:3222431/93‑1 (MQ=255)

       cTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGt                                                                                 >  2:4001900/1‑93 (MQ=255)

        tGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTc                                                                                <  2:1802244/93‑1 (MQ=255)

        tGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTc                                                                                <  1:5548112/93‑1 (MQ=255)

        tGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTc                                                                                <  1:4272965/93‑1 (MQ=255)

         gTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCt                                                                               <  2:4333842/93‑1 (MQ=255)

            gCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGtt                                                                            <  1:1664842/93‑1 (MQ=255)

             cTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGttt                                                                           >  2:1586370/1‑93 (MQ=255)

              tACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttg                                                                          >  1:1311895/1‑93 (MQ=255)

              tACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttg                                                                          >  1:3779099/1‑93 (MQ=255)

              tACACGCCGGATAAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttg                                                                          <  2:1156972/93‑1 (MQ=255)

               acacGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttga                                                                         >  2:3966459/1‑93 (MQ=255)

               acacGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATCGTCACCAGCCGCGATGATGTCTGTttga                                                                         <  1:3247743/93‑1 (MQ=255)

                 acGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttgatt                                                                       >  2:3517514/1‑93 (MQ=255)

                  cGCCGGATCAAGGTTCCACGCGCATTGAACGCGGGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttgattg                                                                      <  2:5799274/93‑1 (MQ=255)

                   gCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttgattga                                                                     <  2:4788282/93‑1 (MQ=255)

                   gCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttgattga                                                                     >  1:4089686/1‑93 (MQ=255)

                     cGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGt                                                                   >  2:4600174/1‑93 (MQ=255)

                      ggATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGtt                                                                  <  1:1603012/93‑1 (MQ=255)

                      ggATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGtt                                                                  >  1:4563617/1‑93 (MQ=255)

                       gATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGttt                                                                 <  2:2382181/93‑1 (MQ=255)

                       gATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGCGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGttt                                                                 >  1:662718/1‑93 (MQ=255)

                        aTCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTc                                                                <  1:5861565/93‑1 (MQ=255)

                         tCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCa                                                               <  2:2962248/93‑1 (MQ=255)

                         tCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCa                                                               >  2:5227917/1‑93 (MQ=255)

                         tCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCa                                                               >  1:2299219/1‑93 (MQ=255)

                         tCAAGGTGCCACGCGCATTGAGCTCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCa                                                               <  1:5476282/93‑1 (MQ=255)

                          cAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAg                                                              <  2:401483/93‑1 (MQ=255)

                          cAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGGTTGATTGAGTTTCAg                                                              >  2:5333690/1‑93 (MQ=255)

                            aGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGt                                                            >  1:4446337/1‑93 (MQ=255)

                             ggTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTg                                                           <  2:2120184/93‑1 (MQ=255)

                               ttCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGcc                                                         <  1:3988874/93‑1 (MQ=255)

                                tCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGccc                                                        >  2:131430/1‑93 (MQ=255)

                                tCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGccc                                                        >  2:5476552/1‑93 (MQ=255)

                                tCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGccc                                                        <  2:5934406/93‑1 (MQ=255)

                                tCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGccc                                                        >  1:947984/1‑93 (MQ=255)

                                 ccACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTGTGTTTGATTGAGTTTCAGGTGCCCg                                                       >  1:6087969/1‑93 (MQ=255)

                                  cACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGc                                                      <  1:5988474/93‑1 (MQ=255)

                                  cACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGc                                                      >  1:2639487/1‑93 (MQ=255)

                                    cgcgCATTGAACGCGTGGTGGCCTCCGGTACTGGTGCCCGGATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCa                                                    <  1:878887/93‑1 (MQ=255)

                                     gcgcATTGACCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAg                                                   <  1:2346029/93‑1 (MQ=255)

                                     gcgcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAg                                                   >  1:3588653/1‑93 (MQ=255)

                                     gcgcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAg                                                   <  1:4925291/93‑1 (MQ=255)

                                       gcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTc                                                 >  1:4064615/1‑93 (MQ=255)

                                       gcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTc                                                 >  2:5962023/1‑93 (MQ=255)

                                       gcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTc                                                 <  1:4964357/93‑1 (MQ=255)

                                        cATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCa                                                >  1:5880481/1‑93 (MQ=255)

                                        cATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCa                                                >  2:5614695/1‑93 (MQ=255)

                                         aTTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAg                                               <  1:5418207/93‑1 (MQ=255)

                                          ttGACCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAgg                                              <  2:190805/93‑1 (MQ=255)

                                            gAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGAt                                            >  2:5016785/1‑93 (MQ=255)

                                              aCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGAttt                                          >  1:5850415/1‑93 (MQ=255)

                                              aCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGAttt                                          >  1:3231406/1‑93 (MQ=255)

                                               cgcgTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTc                                         <  1:3076636/93‑1 (MQ=255)

                                               cgcgTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTc                                         <  1:510450/93‑1 (MQ=255)

                                                  gTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCaaa                                      <  2:673475/93‑1 (MQ=255)

                                                   tGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAAc                                     <  1:6147048/93‑1 (MQ=255)

                                                       ggCCTCGGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGgc                                 <  1:4640133/93‑1 (MQ=255)

                                                       ggCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGgc                                 <  2:6068437/93‑1 (MQ=255)

                                                         ccTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGgcgc                               <  2:5655051/93‑1 (MQ=255)

                                                          cTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCa                              >  1:3472949/1‑93 (MQ=255)

                                                           tCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCAt                             >  1:5270422/1‑93 (MQ=255)

                                                           tCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCAt                             >  2:2656325/1‑93 (MQ=255)

                                                            ccGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATa                            >  2:1144029/1‑93 (MQ=255)

                                                            ccGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATa                            <  1:3846986/93‑1 (MQ=255)

                                                                tACTGGTGCGCGTATTTTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAaga                        <  2:234949/93‑1 (MQ=255)

                                                                tACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAaga                        >  2:1376580/1‑93 (MQ=255)

                                                                  cTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGNATTTCAAACTGGCGCATAAAgaga                      >  2:1014679/1‑93 (MQ=255)

                                                                   tGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGAt                     >  2:5125500/1‑93 (MQ=255)

                                                                    ggTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATc                    >  2:1224707/1‑93 (MQ=255)

                                                                     gTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCg                   <  1:4700322/93‑1 (MQ=255)

                                                                      tGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGa                  <  1:2721029/93‑1 (MQ=255)

                                                                      gccgcgTATTGCCACCAGCCGCGATGATCTCTGTTTGATTGACTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGa                  <  1:177602/91‑1 (MQ=255)

                                                                       gcgcGTATTGTCCCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAc                 <  1:5691697/93‑1 (MQ=255)

                                                                       gcgcGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAc                 >  2:4684423/1‑93 (MQ=255)

                                                                       gcgcGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTCCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAc                 <  2:5565459/93‑1 (MQ=255)

                                                                        cccgTATTGTCCCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAcc                <  2:5401263/91‑1 (MQ=255)

                                                                         gcgTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCa               <  2:2938082/93‑1 (MQ=255)

                                                                          cgTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCaa              >  2:3583307/1‑93 (MQ=255)

                                                                           gTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCaaa             >  2:751902/1‑93 (MQ=255)

                                                                           gTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCaaa             <  1:433690/93‑1 (MQ=255)

                                                                           gTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCaaa             >  2:6239763/1‑93 (MQ=255)

                                                                           gTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCaaa             >  1:737354/1‑93 (MQ=255)

                                                                            tATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAt            >  2:2870671/1‑93 (MQ=255)

                                                                            tATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTAGCGCATAAAGAGATCGAACAAAt            >  2:2177157/1‑93 (MQ=255)

                                                                             aTTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATc           >  2:258318/1‑93 (MQ=255)

                                                                              ttGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATcc          >  1:6214325/1‑93 (MQ=255)

                                                                              ttGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGGGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATcc          >  1:3383018/1‑93 (MQ=255)

                                                                               tgccACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCt         <  2:2804226/90‑1 (MQ=255)

                                                                               tGTCCCCAGCCGCGATGATGTCTGTTTGATTGATTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCt         <  2:224872/93‑1 (MQ=255)

                                                                               tGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCt         >  1:5211357/1‑93 (MQ=255)

                                                                                gTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTg        >  2:4424953/1‑93 (MQ=255)

                                                                                 tccccAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGa       <  2:2483668/90‑1 (MQ=255)

                                                                                 tCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGa       <  1:1967145/93‑1 (MQ=255)

                                                                                      aGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAAcgc  <  1:3687373/93‑1 (MQ=255)

AACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGC  >  NC_000913/4128265‑4128443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGCA  >  NC_000913/4128262‑4128448

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCG                                                                                               >  SRR4302533.5209071/1‑94 (MQ=60)

TGCAACGGCGCTGTAGCTACACGCGGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCG                                                                                               <  SRR4302533.4552983/94‑1 (MQ=60)

 GCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGC                                                                                              >  SRR4302533.4195748/1‑94 (MQ=60)

  CAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCG                                                                                             >  SRR4302533.2727077/1‑94 (MQ=60)

   AACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGA                                                                                            >  SRR4302533.488632/1‑94 (MQ=60)

   AACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGA                                                                                            <  SRR4302533.2862881/94‑1 (MQ=60)

    ACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGAT                                                                                           <  SRR4302533.6197696/94‑1 (MQ=60)

    ACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGAT                                                                                           <  SRR4302533.5687091/94‑1 (MQ=60)

     CTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATG                                                                                          <  SRR4302533.151050/94‑1 (MQ=60)

     CTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATG                                                                                          >  SRR4302533.2784552/1‑94 (MQ=60)

     CTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATG                                                                                          >  SRR4302533.5340293/1‑94 (MQ=60)

     CTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATG                                                                                          >  SRR4302533.5493193/1‑94 (MQ=60)

     CTGCGCTGTAGCTACACGCCGGATCAAGCTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATG                                                                                          <  SRR4302533.74890/94‑1 (MQ=60)

       GCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGAT                                                                                        <  SRR4302533.894679/94‑1 (MQ=60)

        CGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATG                                                                                       <  SRR4302533.466184/94‑1 (MQ=60)

        CGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATG                                                                                       >  SRR4302533.3893747/1‑94 (MQ=60)

          CTGTAGCTCCACGCCGGAGCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTC                                                                                     <  SRR4302533.6184278/94‑1 (MQ=60)

          CTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTAGTGCGCGTATTGTCACCAGCCGCGATGATGTC                                                                                     >  SRR4302533.4320701/1‑94 (MQ=60)

           TGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCT                                                                                    <  SRR4302533.5581618/94‑1 (MQ=60)

           TGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCT                                                                                    <  SRR4302533.4298678/94‑1 (MQ=60)

            GTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTG                                                                                   <  SRR4302533.1850814/94‑1 (MQ=60)

               GCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTT                                                                                >  SRR4302533.3546905/1‑94 (MQ=60)

               GCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTT                                                                                <  SRR4302533.1674902/94‑1 (MQ=60)

                CTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTG                                                                               >  SRR4302533.5636364/1‑94 (MQ=60)

                CTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTG                                                                               >  SRR4302533.1319768/1‑94 (MQ=60)

                CTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTG                                                                               >  SRR4302533.3802252/1‑94 (MQ=60)

                  ACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATCGTCACCAGCCGCGATGATGTCTGTTTGAT                                                                             <  SRR4302533.3267772/94‑1 (MQ=60)

                   CACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATT                                                                            >  SRR4302533.2316181/1‑94 (MQ=60)

                     CGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGA                                                                          >  SRR4302533.4114584/1‑94 (MQ=60)

                     CGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGA                                                                          >  SRR4302533.2023152/1‑94 (MQ=60)

                      GCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAG                                                                         <  SRR4302533.1341831/94‑1 (MQ=60)

                      ACCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACAAGCCGCGATGATGTCTGTTTGATTGAG                                                                         <  SRR4302533.4876542/94‑1 (MQ=60)

                       CCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGT                                                                        >  SRR4302533.5280266/1‑94 (MQ=60)

                       CCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGT                                                                        <  SRR4302533.5611033/94‑1 (MQ=60)

                       CCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGT                                                                        >  SRR4302533.5992889/1‑94 (MQ=60)

                        CGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTT                                                                       <  SRR4302533.4786442/94‑1 (MQ=60)

                        CGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTT                                                                       >  SRR4302533.4591289/1‑94 (MQ=60)

                         GGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTT                                                                      <  SRR4302533.1612718/94‑1 (MQ=60)

                         GGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTT                                                                      <  SRR4302533.5571504/94‑1 (MQ=60)

                         GGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGCGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTT                                                                      >  SRR4302533.666632/1‑94 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                    <  SRR4302533.3613440/94‑1 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                    >  SRR4302533.6185550/1‑94 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                    >  SRR4302533.2313474/1‑94 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                    <  SRR4302533.3447262/94‑1 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                    <  SRR4302533.5897005/94‑1 (MQ=60)

                            TCAAGGTTCCACGCGCATTGAGCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAG                                                                   <  SRR4302533.5110311/94‑1 (MQ=60)

                            TCAAGGTGCCACGCGCATTGAGCTCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAG                                                                   <  SRR4302533.5509293/94‑1 (MQ=60)

                             CAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGG                                                                  >  SRR4302533.953622/1‑94 (MQ=60)

                             CAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGG                                                                  >  SRR4302533.3014466/1‑94 (MQ=60)

                             CAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGG                                                                  >  SRR4302533.2104831/1‑94 (MQ=60)

                             CAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGG                                                                  >  SRR4302533.5932440/1‑94 (MQ=60)

                             CAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGG                                                                  >  SRR4302533.1753363/1‑94 (MQ=60)

                              AAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGtg                                                                 >  SRR4302533.5912916/1‑92 (MQ=60)

                              AAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGT                                                                 >  SRR4302533.4473229/1‑94 (MQ=60)

                               AGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTG                                                                >  SRR4302533.679890/1‑94 (MQ=60)

                                 GTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCC                                                              >  SRR4302533.2724884/1‑94 (MQ=60)

                                  TTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCC                                                             <  SRR4302533.4013170/94‑1 (MQ=60)

                                  TTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCC                                                             >  SRR4302533.953555/1‑94 (MQ=60)

                                   TCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTGTGTTTGATTGAGTTTCAGGTGCCCG                                                            >  SRR4302533.6124771/1‑94 (MQ=60)

                                    CCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGC                                                           >  SRR4302533.5867872/1‑94 (MQ=60)

                                    CCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGC                                                           >  SRR4302533.2655711/1‑94 (MQ=60)

                                     CACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCC                                                          <  SRR4302533.6024742/94‑1 (MQ=60)

                                       CGCGCATTGAACGCGTGGTGGCCTCCGGTACTGGTGCCCGGATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAG                                                        <  SRR4302533.884046/94‑1 (MQ=60)

                                       CGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAG                                                        >  SRR4302533.3610751/1‑94 (MQ=60)

                                       CGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAG                                                        >  SRR4302533.4150298/1‑94 (MQ=60)

                                        GCGCATTGACCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGT                                                       <  SRR4302533.2360550/94‑1 (MQ=60)

                                        GCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGT                                                       <  SRR4302533.4955122/94‑1 (MQ=60)

                                         CGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTC                                                      >  SRR4302533.4089356/1‑94 (MQ=60)

                                         CGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTC                                                      >  SRR4302533.3265423/1‑94 (MQ=60)

                                          GCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCA                                                     >  SRR4302533.5916017/1‑94 (MQ=60)

                                          GCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCA                                                     <  SRR4302533.4994451/94‑1 (MQ=60)

                                            ATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGG                                                   <  SRR4302533.1591251/94‑1 (MQ=60)

                                            ATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGG                                                   >  SRR4302533.3886635/1‑94 (MQ=60)

                                            ATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGG                                                   <  SRR4302533.5450800/94‑1 (MQ=60)

                                            ATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGG                                                   >  SRR4302533.2652277/1‑94 (MQ=60)

                                               GAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATT                                                >  SRR4302533.6026751/1‑94 (MQ=60)

                                               GAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATT                                                <  SRR4302533.5753276/94‑1 (MQ=60)

                                                AACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTT                                               >  SRR4302533.5885787/1‑94 (MQ=60)

                                                AACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTT                                               >  SRR4302533.3251324/1‑94 (MQ=60)

                                                 ACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTC                                              <  SRR4302533.4942280/94‑1 (MQ=60)

                                                  CGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCA                                             <  SRR4302533.513485/94‑1 (MQ=60)

                                                  CGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCA                                             <  SRR4302533.3095519/94‑1 (MQ=60)

                                                   GCGTGCTGGCCTCCGGTCCTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAA                                            <  SRR4302533.3459416/94‑1 (MQ=60)

                                                    CGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAA                                           >  SRR4302533.535059/1‑94 (MQ=60)

                                                      TGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACT                                         <  SRR4302533.6184055/94‑1 (MQ=60)

                                                        CTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGG                                       >  SRR4302533.6279881/1‑94 (MQ=60)

                                                         TGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGC                                      <  SRR4302533.3230182/94‑1 (MQ=60)

                                                          GGCCTCGGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCG                                     <  SRR4302533.4668248/94‑1 (MQ=60)

                                                          GGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCG                                     >  SRR4302533.3312002/1‑94 (MQ=60)

                                                            CCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCA                                   >  SRR4302533.3494380/1‑94 (MQ=60)

                                                             CTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCAT                                  >  SRR4302533.5302030/1‑94 (MQ=60)

                                                             CTCCGGTACTGGTGCGCGTATTGTCACCAACCGCGATGATGTCTGTTTGATTAAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCGT                                  >  SRR4302533.5169624/1‑94 (MQ=60)

                                                               CCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAA                                <  SRR4302533.1617992/94‑1 (MQ=60)

                                                               CCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAA                                <  SRR4302533.3870477/94‑1 (MQ=60)

                                                                CGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAA                               >  SRR4302533.5714788/1‑94 (MQ=60)

                                                                 GGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAG                              <  SRR4302533.4261741/94‑1 (MQ=60)

                                                                 GGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAG                              >  SRR4302533.3217255/1‑94 (MQ=60)

                                                                 GGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAG                              >  SRR4302533.5123017/1‑94 (MQ=60)

                                                                 GGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGACTTCAAACTGGCGCATAAAG                              >  SRR4302533.4368048/1‑94 (MQ=60)

                                                                  GTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGA                             >  SRR4302533.377053/1‑94 (MQ=60)

                                                                   TACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAG                            >  SRR4302533.4680520/1‑94 (MQ=60)

                                                                     CTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGAT                          <  SRR4302533.6183032/94‑1 (MQ=60)

                                                                        gtgcggatagtgccgCCAGCCGCGATGATGTCTGTTAGATTGATTTTCAGGTGCCCGCCAGTCAGCATTTCAAACTGGCGCATAAAGAGATCGA                       <  SRR4302533.6285221/79‑1 (MQ=60)

                                                                        GTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGA                       <  SRR4302533.4728821/94‑1 (MQ=60)

                                                                         gcCGCGTATTGCCACCAGCCGCGATGATCTCTGTTTGATTGACTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAC                      <  SRR4302533.178714/92‑1 (MQ=60)

                                                                         TGCGCTTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAC                      <  SRR4302533.4094351/94‑1 (MQ=60)

                                                                         TGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAC                      <  SRR4302533.2737730/94‑1 (MQ=60)

                                                                          GCGCGTATTGTCCCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACC                     <  SRR4302533.5726072/94‑1 (MQ=60)

                                                                          GCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCTAACTGGCCCATAAAGAGATCGACC                     >  SRR4302533.4512177/1‑94 (MQ=60)

                                                                           CGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCA                    <  SRR4302533.5895593/94‑1 (MQ=60)

                                                                            GCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAA                   >  SRR4302533.784603/1‑94 (MQ=60)

                                                                             CGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAA                  >  SRR4302533.741696/1‑94 (MQ=60)

                                                                              GTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAT                 <  SRR4302533.436276/94‑1 (MQ=60)

                                                                               TATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATC                <  SRR4302533.4027396/94‑1 (MQ=60)

                                                                                ATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCC               >  SRR4302533.6251590/1‑94 (MQ=60)

                                                                                ATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGGGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCC               >  SRR4302533.3403904/1‑94 (MQ=60)

                                                                                 TTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCT              >  SRR4302533.5242742/1‑94 (MQ=60)

                                                                                 TTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCT              >  SRR4302533.454763/1‑94 (MQ=60)

                                                                                   GTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGA            >  SRR4302533.3720448/1‑94 (MQ=60)

                                                                                    TCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAA           >  SRR4302533.1643966/1‑94 (MQ=60)

                                                                                    TCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAA           <  SRR4302533.1979166/94‑1 (MQ=60)

                                                                                       CCAGCCGGGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACG        <  SRR4302533.3813272/94‑1 (MQ=60)

                                                                                       CCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACG        >  SRR4302533.4981638/1‑94 (MQ=60)

                                                                                         AGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCG      <  SRR4302533.3710034/94‑1 (MQ=60)

                                                                                          GCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGC     >  SRR4302533.535487/1‑94 (MQ=60)

                                                                                          GCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGC     >  SRR4302533.2915531/1‑94 (MQ=60)

                                                                                          GCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGC     >  SRR4302533.946612/1‑94 (MQ=60)

                                                                                            CGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGC   >  SRR4302533.4275271/1‑94 (MQ=60)

                                                                                             GCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGCA  >  SRR4302533.6092341/1‑94 (MQ=60)

                                                                                             GCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGACAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGCA  >  SRR4302533.798730/1‑94 (MQ=60)

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGCA  >  NC_000913/4128262‑4128448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`