Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,137,219	C→T	G24R (GGG→AGG)	talC ←	putative transaldolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,137,219	0	C	T	100.0%	951.4 / NA	255	G24R (GGG→AGG)	talC	putative transaldolase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (119/136); total (119/136)

Only 100 of 271 total aligned reads displayed.

CCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTC  >  NC_000913/4137129‑4137308

    atcaCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAAt                                                                                     <  2:5868418/93‑1 (MQ=255)

     tcaCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATg                                                                                    >  2:4120249/1‑93 (MQ=255)

     tcaCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATg                                                                                    >  1:3827671/1‑93 (MQ=255)

     tcaCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATg                                                                                    >  1:3036404/1‑93 (MQ=255)

       aCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATggg                                                                                  <  1:2926732/93‑1 (MQ=255)

        ccAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATgggg                                                                                 >  2:304051/1‑93 (MQ=255)

        ccAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATgggg                                                                                 <  1:5667638/93‑1 (MQ=255)

         cAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGa                                                                                <  1:1800139/93‑1 (MQ=255)

            tCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAata                                                                             <  2:741852/93‑1 (MQ=255)

            tCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAata                                                                             <  1:2482354/93‑1 (MQ=255)

            tCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAata                                                                             <  2:427516/93‑1 (MQ=255)

            tCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAata                                                                             <  1:1722293/93‑1 (MQ=255)

              gCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATg                                                                           >  1:315408/1‑93 (MQ=255)

              gCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATg                                                                           <  1:4328762/93‑1 (MQ=255)

               cTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGc                                                                          <  1:3514437/93‑1 (MQ=255)

               cTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGc                                                                          <  2:6072220/93‑1 (MQ=255)

               cTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGc                                                                          >  1:4196451/1‑93 (MQ=255)

                      cAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAg                                                                   <  2:6013592/93‑1 (MQ=255)

                       aGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGa                                                                  >  1:5107206/1‑93 (MQ=255)

                        gACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAc                                                                 >  2:4477865/1‑93 (MQ=255)

                        gACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAc                                                                 >  2:1855256/1‑93 (MQ=255)

                         aCGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACg                                                                >  2:2453514/1‑93 (MQ=255)

                          cgcgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGt                                                               <  1:2595254/93‑1 (MQ=255)

                           gcgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGtt                                                              <  2:5832054/93‑1 (MQ=255)

                           gcgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGtt                                                              <  1:4832278/93‑1 (MQ=255)

                           gcgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGtt                                                              <  1:582517/93‑1 (MQ=255)

                            cgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTc                                                             >  1:557610/1‑93 (MQ=255)

                            cgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTc                                                             >  2:5024821/1‑93 (MQ=255)

                              gcagccCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGa                                                           >  2:3207834/1‑93 (MQ=255)

                              gcagcaCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGa                                                           >  2:2655831/1‑93 (MQ=255)

                                agcaCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACt                                                         <  2:5400201/93‑1 (MQ=255)

                                   aCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCt                                                      <  2:4667539/93‑1 (MQ=255)

                                   aCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCt                                                      >  2:1513805/1‑93 (MQ=255)

                                     ttCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGc                                                    <  2:4867855/93‑1 (MQ=255)

                                     ttCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGc                                                    >  2:6257099/1‑93 (MQ=255)

                                       cccATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGa                                                  <  1:2146829/93‑1 (MQ=255)

                                        ccATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGACAGACGTTCGACTTCTGCGAc                                                 >  1:5851673/1‑93 (MQ=255)

                                         cATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACg                                                >  1:4067698/1‑93 (MQ=255)

                                         cATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACg                                                <  2:5660988/93‑1 (MQ=255)

                                          atatGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGCTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGt                                               >  2:5785537/1‑93 (MQ=255)

                                           tatGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGtt                                              <  2:5546523/93‑1 (MQ=255)

                                           tatGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGtt                                              <  2:2188657/93‑1 (MQ=255)

                                           tatGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGtt                                              <  1:122657/93‑1 (MQ=255)

                                            atGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTa                                             >  2:5270751/1‑93 (MQ=255)

                                            atGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTa                                             <  1:632761/93‑1 (MQ=255)

                                             tGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAg                                            <  2:3662704/93‑1 (MQ=255)

                                             tGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAg                                            >  1:6170194/1‑93 (MQ=255)

                                             tGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAg                                            <  1:2544356/93‑1 (MQ=255)

                                              ggACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGc                                           <  1:3924123/93‑1 (MQ=255)

                                               gACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCg                                          <  1:5147849/93‑1 (MQ=255)

                                               gACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCg                                          <  1:4219172/93‑1 (MQ=255)

                                               gACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGCTCGACTTCTGCGACGTTAGCg                                          >  1:1304485/1‑93 (MQ=255)

                                                aCTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCgg                                         <  1:6006065/93‑1 (MQ=255)

                                                 cTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGgt                                        <  1:4685534/93‑1 (MQ=255)

                                                  tCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGgtg                                       >  2:1358695/1‑93 (MQ=255)

                                                  tCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGgtg                                       >  2:3921114/1‑93 (MQ=255)

                                                  tCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGgtg                                       <  2:1152722/93‑1 (MQ=255)

                                                    cTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTc                                     >  2:3747643/1‑93 (MQ=255)

                                                     ttGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTcc                                    <  2:4380926/93‑1 (MQ=255)

                                                      tGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCa                                   <  2:2106113/93‑1 (MQ=255)

                                                         tGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAt                                >  1:327687/1‑93 (MQ=255)

                                                         tGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAt                                <  2:2980401/93‑1 (MQ=255)

                                                         tGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAt                                >  1:5749597/1‑93 (MQ=255)

                                                           gCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATAc                              >  2:3784158/1‑93 (MQ=255)

                                                            cAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACa                             <  1:6134361/93‑1 (MQ=255)

                                                            cAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACa                             <  2:3274751/93‑1 (MQ=255)

                                                             aGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAg                            <  2:2364389/93‑1 (MQ=255)

                                                              gCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGt                           >  2:4586450/1‑93 (MQ=255)

                                                              gCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGt                           >  2:4216651/1‑93 (MQ=255)

                                                               cGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGtt                          >  1:3627307/1‑93 (MQ=255)

                                                                gagaaTGCTCGGGTTGGTTGTCGCCCTGGCAATGGGGAATATGCGTGCCATACGTTCGTCGTCTGCGACGTTAGCGGTGTCCAGATACAGTTc                         <  1:3109626/90‑1 (MQ=255)

                                                                gATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTc                         <  2:2582373/93‑1 (MQ=255)

                                                                gATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTc                         >  1:4922385/1‑93 (MQ=255)

                                                                 aTAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTcc                        >  1:2968257/1‑93 (MQ=255)

                                                                 aTAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGGGTCCAGATACAGTTcc                        >  2:1068848/1‑93 (MQ=255)

                                                                  tAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCa                       >  2:5188435/1‑93 (MQ=255)

                                                                  tAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCa                       >  2:87975/1‑93 (MQ=255)

                                                                  tAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCa                       <  2:4184663/93‑1 (MQ=255)

                                                                   aaTGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCat                      >  2:3994835/1‑93 (MQ=255)

                                                                    aTGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCatg                     <  1:167904/93‑1 (MQ=255)

                                                                       cTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCatgatg                  <  2:5236934/93‑1 (MQ=255)

                                                                        tCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGt                 >  2:252969/1‑93 (MQ=255)

                                                                         cGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGtt                <  1:2356644/93‑1 (MQ=255)

                                                                          gggTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGttt               >  2:617966/1‑93 (MQ=255)

                                                                            gttggttgTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTcc             <  2:2855646/93‑1 (MQ=255)

                                                                            gttggttgTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTcc             <  1:1943442/93‑1 (MQ=255)

                                                                            gttggttgTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTcc             >  2:3359760/1‑93 (MQ=255)

                                                                            gttggttgTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTcc             >  2:4299925/1‑93 (MQ=255)

                                                                               ggTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCttt          >  1:4525397/2‑93 (MQ=255)

                                                                                gTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCtttt         <  2:461242/93‑1 (MQ=255)

                                                                                  tGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAc       >  1:390306/1‑93 (MQ=255)

                                                                                  tGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAc       <  1:2781654/93‑1 (MQ=255)

                                                                                   gTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAca      <  2:1667664/93‑1 (MQ=255)

                                                                                   gTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAca      <  1:2011708/93‑1 (MQ=255)

                                                                                    tCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAcag     <  1:1624066/93‑1 (MQ=255)

                                                                                      cccctGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAcagtt   <  2:5985782/92‑1 (MQ=255)

                                                                                      aCCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAcagtt   >  1:5300243/1‑93 (MQ=255)

                                                                                      aCCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAcagtt   >  2:2387484/1‑93 (MQ=255)

                                                                                      aCCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAcagtt   >  1:5489216/1‑93 (MQ=255)

                                                                                       ccctGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAcagttc  <  1:3191809/93‑1 (MQ=255)

CCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTC  >  NC_000913/4137129‑4137308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCAGT  >  NC_000913/4137127‑4137312

GCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTG                                                                                              <  SRR4302533.290949/94‑1 (MQ=60)

GCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTG                                                                                              <  SRR4302533.5342072/94‑1 (MQ=60)

GCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTG                                                                                              <  SRR4302533.1759188/94‑1 (MQ=60)

 CCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGG                                                                                             <  SRR4302533.2793719/94‑1 (MQ=60)

  CCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGC                                                                                            >  SRR4302533.5285988/1‑94 (MQ=60)

  CCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGC                                                                                            <  SRR4302533.1951897/94‑1 (MQ=60)

   CTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCA                                                                                           <  SRR4302533.5888173/94‑1 (MQ=60)

      ATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATG                                                                                        >  SRR4302533.3054983/1‑94 (MQ=60)

      ATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATG                                                                                        >  SRR4302533.3851071/1‑94 (MQ=60)

         ACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGG                                                                                     >  SRR4302533.3792191/1‑94 (MQ=60)

         ACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGG                                                                                     <  SRR4302533.2944639/94‑1 (MQ=60)

         ACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGG                                                                                     <  SRR4302533.4455667/94‑1 (MQ=60)

          CCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGA                                                                                    >  SRR4302533.627290/1‑94 (MQ=60)

          CCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGA                                                                                    <  SRR4302533.5701873/94‑1 (MQ=60)

           CAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAA                                                                                   <  SRR4302533.3204986/94‑1 (MQ=60)

           CAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAA                                                                                   <  SRR4302533.2407198/94‑1 (MQ=60)

           CAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAA                                                                                   <  SRR4302533.1811092/94‑1 (MQ=60)

           CAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAA                                                                                   >  SRR4302533.1264441/1‑94 (MQ=60)

              TCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATAT                                                                                <  SRR4302533.1732737/94‑1 (MQ=60)

              TCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATAT                                                                                <  SRR4302533.2497659/94‑1 (MQ=60)

               CGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATG                                                                               >  SRR4302533.317333/1‑94 (MQ=60)

                GCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGC                                                                              >  SRR4302533.4221856/1‑94 (MQ=60)

                GCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGC                                                                              <  SRR4302533.4233462/94‑1 (MQ=60)

                GCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGC                                                                              <  SRR4302533.4354840/94‑1 (MQ=60)

                 CTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCG                                                                             <  SRR4302533.2193794/94‑1 (MQ=60)

                 CTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCG                                                                             <  SRR4302533.3025368/94‑1 (MQ=60)

                 CTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCG                                                                             <  SRR4302533.3536099/94‑1 (MQ=60)

                       GCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAG                                                                       <  SRR4302533.4859019/94‑1 (MQ=60)

                       GCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAG                                                                       <  SRR4302533.1385046/94‑1 (MQ=60)

                       GCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAG                                                                       <  SRR4302533.3166397/94‑1 (MQ=60)

                        CAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGA                                                                      >  SRR4302533.5138063/1‑94 (MQ=60)

                         AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACTCTGGCAATGGGGAATATGCGTGCCAGAC                                                                     >  SRR4302533.3192778/1‑94 (MQ=60)

                         AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAC                                                                     >  SRR4302533.842635/1‑94 (MQ=60)

                          GACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACG                                                                    <  SRR4302533.2601449/94‑1 (MQ=60)

                            CGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTT                                                                  <  SRR4302533.2611204/94‑1 (MQ=60)

                             GCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTC                                                                 >  SRR4302533.560922/1‑94 (MQ=60)

                             GCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTC                                                                 <  SRR4302533.3113172/94‑1 (MQ=60)

                             GCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTC                                                                 <  SRR4302533.3598453/94‑1 (MQ=60)

                             GCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTC                                                                 <  SRR4302533.585950/94‑1 (MQ=60)

                             GCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTC                                                                 <  SRR4302533.4861567/94‑1 (MQ=60)

                              CGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCG                                                                <  SRR4302533.410962/94‑1 (MQ=60)

                              CGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCG                                                                <  SRR4302533.2979475/94‑1 (MQ=60)

                               GGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGA                                                               <  SRR4302533.2764490/94‑1 (MQ=60)

                                 CAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACT                                                             <  SRR4302533.6068820/94‑1 (MQ=60)

                                 CAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACT                                                             >  SRR4302533.6193701/1‑94 (MQ=60)

                                 CAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACT                                                             >  SRR4302533.1363788/1‑94 (MQ=60)

                                 CAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACT                                                             <  SRR4302533.3773610/94‑1 (MQ=60)

                                  AGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTT                                                            <  SRR4302533.4940077/94‑1 (MQ=60)

                                    CACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCT                                                          <  SRR4302533.525700/94‑1 (MQ=60)

                                     ACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTG                                                         >  SRR4302533.4339477/1‑94 (MQ=60)

                                      CTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGC                                                        >  SRR4302533.2994665/1‑94 (MQ=60)

                                      CTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGC                                                        >  SRR4302533.1695589/1‑94 (MQ=60)

                                         CCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGAC                                                     <  SRR4302533.2160051/94‑1 (MQ=60)

                                         CCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGAC                                                     >  SRR4302533.5441171/1‑94 (MQ=60)

                                         CCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGACAGACGTTCGACTTCTGCGAC                                                     >  SRR4302533.5887051/1‑94 (MQ=60)

                                          CCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACG                                                    >  SRR4302533.4092459/1‑94 (MQ=60)

                                           CATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGT                                                   >  SRR4302533.2757210/1‑94 (MQ=60)

                                             TATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTA                                                 <  SRR4302533.6003299/94‑1 (MQ=60)

                                             TATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTA                                                 <  SRR4302533.123429/94‑1 (MQ=60)

                                              ATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAG                                                <  SRR4302533.636484/94‑1 (MQ=60)

                                              ATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAG                                                <  SRR4302533.3255868/94‑1 (MQ=60)

                                              ATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAG                                                >  SRR4302533.6207279/1‑94 (MQ=60)

                                               TGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGC                                               >  SRR4302533.4140053/1‑94 (MQ=60)

                                               TGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGC                                               <  SRR4302533.4493461/94‑1 (MQ=60)

                                               TGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGC                                               <  SRR4302533.2560014/94‑1 (MQ=60)

                                                GGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCG                                              <  SRR4302533.1689035/94‑1 (MQ=60)

                                                GGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCG                                              <  SRR4302533.3948083/94‑1 (MQ=60)

                                                GGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGCTCGACTTCTGCGACGTTAGCG                                              >  SRR4302533.1312323/1‑94 (MQ=60)

                                                 GACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGG                                             <  SRR4302533.4244689/94‑1 (MQ=60)

                                                 GACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGG                                             <  SRR4302533.5178953/94‑1 (MQ=60)

                                                 GACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGG                                             >  SRR4302533.564071/1‑94 (MQ=60)

                                                 GACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGG                                             <  SRR4302533.5771065/94‑1 (MQ=60)

                                                 GACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGG                                             <  SRR4302533.4076625/94‑1 (MQ=60)

                                                  ACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGT                                            <  SRR4302533.6042454/94‑1 (MQ=60)

                                                  ACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGT                                            >  SRR4302533.3894863/1‑94 (MQ=60)

                                                  ACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGT                                            <  SRR4302533.5655905/94‑1 (MQ=60)

                                                  ACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGT                                            >  SRR4302533.460151/1‑94 (MQ=60)

                                                   CTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGTGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTG                                           <  SRR4302533.3548162/94‑1 (MQ=60)

                                                   CTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTG                                           <  SRR4302533.2153528/94‑1 (MQ=60)

                                                   CTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTG                                           <  SRR4302533.4713918/94‑1 (MQ=60)

                                                   CTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTG                                           >  SRR4302533.2923269/1‑94 (MQ=60)

                                                    TCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGT                                          >  SRR4302533.2970437/1‑94 (MQ=60)

                                                       TTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCA                                       <  SRR4302533.2022343/94‑1 (MQ=60)

                                                       TTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCA                                       <  SRR4302533.4932198/94‑1 (MQ=60)

                                                       TTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCA                                       <  SRR4302533.5869797/94‑1 (MQ=60)

                                                        TGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTCGCGGTGTCCAG                                      >  SRR4302533.3939912/1‑94 (MQ=60)

                                                         GCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGA                                     <  SRR4302533.5177619/94‑1 (MQ=60)

                                                         GCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGA                                     <  SRR4302533.4336057/94‑1 (MQ=60)

                                                          CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAT                                    >  SRR4302533.2529784/1‑94 (MQ=60)

                                                          CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAT                                    <  SRR4302533.5401474/94‑1 (MQ=60)

                                                          CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAT                                    <  SRR4302533.1743245/94‑1 (MQ=60)

                                                          CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAT                                    >  SRR4302533.329681/1‑94 (MQ=60)

                                                          CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAT                                    >  SRR4302533.5784283/1‑94 (MQ=60)

                                                           TGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTAGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAACGGTGTCCAGATA                                   >  SRR4302533.1447847/1‑94 (MQ=60)

                                                              CAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGCCTTCTGCGACGTTAGCGGTGTCCAGATACAG                                >  SRR4302533.2213490/1‑94 (MQ=60)

                                                              CAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAG                                <  SRR4302533.6171324/94‑1 (MQ=60)

                                                              CAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAG                                <  SRR4302533.5739455/94‑1 (MQ=60)

                                                               AGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGT                               <  SRR4302533.4579751/94‑1 (MQ=60)

                                                               AGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGT                               <  SRR4302533.4024622/94‑1 (MQ=60)

                                                               AGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGT                               <  SRR4302533.3126087/94‑1 (MQ=60)

                                                                GCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTT                              >  SRR4302533.3649627/1‑94 (MQ=60)

                                                                 CGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTC                             >  SRR4302533.4952203/1‑94 (MQ=60)

                                                                  GATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCC                            >  SRR4302533.167000/1‑94 (MQ=60)

                                                                  GATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCC                            >  SRR4302533.2986404/1‑94 (MQ=60)

                                                                  GATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCC                            >  SRR4302533.2574279/1‑94 (MQ=60)

                                                                  GAGAATGCTCGGGTTGGTTGTCGCCCTGGCAATGGGGAATATGCGTGCCATACGTTCGTCGTCTGCGACGTTAGCGGTGTCCAGATACAGTTCC                            <  SRR4302533.3128739/94‑1 (MQ=60)

                                                                   ATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGTTACAGTTCCA                           <  SRR4302533.6338726/94‑1 (MQ=60)

                                                                    TAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCAT                          <  SRR4302533.961505/94‑1 (MQ=60)

                                                                     AATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATG                         <  SRR4302533.3491020/94‑1 (MQ=60)

                                                                      ATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGA                        <  SRR4302533.168965/94‑1 (MQ=60)

                                                                        GCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATG                      <  SRR4302533.6169882/94‑1 (MQ=60)

                                                                        GCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATG                      <  SRR4302533.179100/94‑1 (MQ=60)

                                                                           CGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTT                   <  SRR4302533.2048691/94‑1 (MQ=60)

                                                                           CGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTT                   <  SRR4302533.2371214/94‑1 (MQ=60)

                                                                            GGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTC                  >  SRR4302533.2441582/1‑94 (MQ=60)

                                                                             GGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCC                 >  SRR4302533.5548035/1‑94 (MQ=60)

                                                                             GGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCC                 >  SRR4302533.3880475/1‑94 (MQ=60)

                                                                             GGTTGGGTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCC                 <  SRR4302533.5826542/94‑1 (MQ=60)

                                                                              GTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCT                <  SRR4302533.1955297/94‑1 (MQ=60)

                                                                              GTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCT                >  SRR4302533.1811788/1‑94 (MQ=60)

                                                                                TGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTT              >  SRR4302533.4552793/1‑94 (MQ=60)

                                                                                   TTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAC           <  SRR4302533.5091206/94‑1 (MQ=60)

                                                                                   TTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTAC           >  SRR4302533.392666/1‑94 (MQ=60)

                                                                                    TGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACA          <  SRR4302533.2798741/94‑1 (MQ=60)

                                                                                     GTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAG         <  SRR4302533.2024101/94‑1 (MQ=60)

                                                                                      TCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGT        <  SRR4302533.1633903/94‑1 (MQ=60)

                                                                                       CACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTT       >  SRR4302533.5331995/1‑94 (MQ=60)

                                                                                       CACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTT       <  SRR4302533.5819506/94‑1 (MQ=60)

                                                                                       CACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTT       <  SRR4302533.4955946/94‑1 (MQ=60)

                                                                                       CACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTT       >  SRR4302533.5522306/1‑94 (MQ=60)

                                                                                         CCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTATCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCC     >  SRR4302533.3581676/1‑94 (MQ=60)

                                                                                         CCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCC     <  SRR4302533.3213061/94‑1 (MQ=60)

                                                                                         CCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCC     >  SRR4302533.1190276/1‑94 (MQ=60)

                                                                                         CCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCC     >  SRR4302533.899446/1‑94 (MQ=60)

                                                                                         CCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCC     <  SRR4302533.3211444/94‑1 (MQ=60)

                                                                                          CCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCA    <  SRR4302533.4940559/94‑1 (MQ=60)

                                                                                          CCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCA    <  SRR4302533.5637227/94‑1 (MQ=60)

                                                                                          CCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCA    >  SRR4302533.3045750/1‑94 (MQ=60)

                                                                                           CTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCAG   <  SRR4302533.6085927/94‑1 (MQ=60)

                                                                                           CTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCAG   <  SRR4302533.3753806/94‑1 (MQ=60)

                                                                                           CTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCAG   <  SRR4302533.3571973/94‑1 (MQ=60)

                                                                                            TGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCAGT  <  SRR4302533.2071694/94‑1 (MQ=60)

                                                                                            TGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCAGT  <  SRR4302533.1903739/94‑1 (MQ=60)

GCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTTTACAGTTCCAGT  >  NC_000913/4137127‑4137312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`