Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,149,200 |
G→A |
A493V (GCG→GTG) |
ppc ← |
phosphoenolpyruvate carboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,149,200 | 0 | G | A | 99.6%
| 891.4
/ NA
| 253 | A493V (GCG→GTG) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (121/130); total (121/132) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 260 total aligned reads displayed.
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCT > NC_000913/4149110‑4149289
|
ttGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCAct > 2:4675215/1‑93 (MQ=255)
gcagcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCActtctt < 1:5273445/93‑1 (MQ=255)
agcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTc < 1:2281588/93‑1 (MQ=255)
gcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcc > 1:2143404/1‑92 (MQ=255)
gcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTca < 1:4920764/93‑1 (MQ=255)
tGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagc > 1:4771791/1‑93 (MQ=255)
tGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagc < 1:2846935/93‑1 (MQ=255)
tGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagc > 2:31801/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagca > 1:3549059/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagca < 1:390006/93‑1 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagca > 2:4292597/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGAAACCGGCATCGCACACCCGATACCCACTTTTTTcagca > 1:3852350/1‑93 (MQ=255)
gTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagc < 1:4086587/93‑1 (MQ=255)
tCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagca < 1:2370688/93‑1 (MQ=255)
tCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagca < 1:6211149/93‑1 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcag < 2:1099197/93‑1 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcag < 2:3539870/93‑1 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcag < 2:3583960/93‑1 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcag < 2:4476774/93‑1 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg < 2:232954/93‑1 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg < 1:5496069/93‑1 (MQ=255)
aTGACACCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcacg < 2:3974657/93‑3 (MQ=255)
tGACATCGTTGGCGTTGTTCAGGTCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGt > 1:1039141/1‑93 (MQ=255)
tGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGt > 1:4179634/1‑93 (MQ=255)
tGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGt > 2:4135971/1‑93 (MQ=255)
gACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTg > 2:304450/1‑93 (MQ=255)
gACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTg > 2:3286455/1‑93 (MQ=255)
aCATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTgg < 1:5623627/93‑1 (MQ=255)
aTCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGGGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGaa > 1:4441340/1‑92 (MQ=255)
aTCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAc > 1:3252861/1‑93 (MQ=255)
cGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAg < 2:2647560/93‑1 (MQ=255)
gTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGc > 2:3785268/1‑93 (MQ=255)
ttGGCGTTGTTCAGATCATCGAGGGATTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGcc > 1:3199321/1‑93 (MQ=255)
tGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAACCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCa < 2:2528388/93‑1 (MQ=255)
tGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACACCCa > 1:3949397/1‑93 (MQ=255)
gCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGt > 1:2672979/1‑93 (MQ=255)
gCGTTGTTCAGATCACCGAGGGTTTCAAACAGCGGAGCAACCGGCATTGCAAACCCGATACCCACTTCGTTCAGCAGCAGGTGAACAGCCAGt < 2:5852693/93‑1 (MQ=255)
cGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTa < 1:4869641/93‑1 (MQ=255)
gttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTc > 2:2749754/1‑93 (MQ=255)
gttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTc < 2:1472442/93‑1 (MQ=255)
ttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCg < 1:1850341/93‑1 (MQ=255)
ttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCg > 1:2628368/1‑93 (MQ=255)
tCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCgg < 1:309068/93‑1 (MQ=255)
cAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGa < 2:3063483/93‑1 (MQ=255)
aGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGAc > 2:6207383/1‑93 (MQ=255)
gATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACg > 1:150527/1‑93 (MQ=255)
gATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACg < 1:4008393/93‑1 (MQ=255)
gATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACg > 2:4337755/1‑93 (MQ=255)
gATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACg < 2:2169599/93‑1 (MQ=255)
atcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGt > 1:5107739/1‑93 (MQ=255)
tcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtt > 2:1673320/1‑93 (MQ=255)
tcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtt > 1:5170030/1‑93 (MQ=255)
cGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGttt < 1:632609/93‑1 (MQ=255)
cGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGttt > 2:5344607/1‑93 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGCAGGCGtttt > 1:6053972/1‑93 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtttt > 1:5790485/1‑93 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtttt > 1:4996547/1‑93 (MQ=255)
ggTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGc > 2:4839513/1‑93 (MQ=255)
gTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGcc < 1:3647512/93‑1 (MQ=255)
tttCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCa > 2:6007356/1‑93 (MQ=255)
ttCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCAt < 2:1216059/93‑1 (MQ=255)
aaaCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCga > 2:4585130/1‑93 (MQ=255)
aaaCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCga < 1:916037/93‑1 (MQ=255)
aaCAGCGGAGAAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCgag > 2:1869774/1‑93 (MQ=255)
aCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCgaga < 2:4929117/93‑1 (MQ=255)
cAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGAt < 1:4710415/93‑1 (MQ=255)
cAGCGGAGCAACCGGCAGCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGAt < 1:678564/93‑1 (MQ=255)
aGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATc < 1:2094194/93‑1 (MQ=255)
aGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATc < 2:6273155/93‑1 (MQ=255)
gCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCa < 1:3418208/93‑1 (MQ=255)
gCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCa < 2:2057745/93‑1 (MQ=255)
cGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCAc < 2:5631088/93‑1 (MQ=255)
gAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGt > 2:761419/1‑93 (MQ=255)
aGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTa < 1:28702/93‑1 (MQ=255)
aGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTa < 2:5895311/93‑1 (MQ=255)
aGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTa > 1:2537543/1‑93 (MQ=255)
gCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAg < 1:5348900/93‑1 (MQ=255)
cAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAgg < 2:6183423/93‑1 (MQ=255)
aaCCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGATATCACGTAggc > 2:6080773/1‑93 (MQ=255)
aaCCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAggg > 1:5467279/1‑92 (MQ=255)
ggCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCa > 1:1748146/1‑93 (MQ=255)
aTCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCCTCGAGATCCCGTAGGCGGCAATg > 2:1547781/1‑93 (MQ=255)
aTCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATg < 1:5652723/93‑1 (MQ=255)
tCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATgg < 2:2494346/93‑1 (MQ=255)
tCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATgg > 1:4208035/1‑93 (MQ=255)
gCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAg < 2:900886/93‑1 (MQ=255)
gCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAg < 1:2698430/93‑1 (MQ=255)
cAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGc > 2:1042717/1‑93 (MQ=255)
cAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGc > 1:1359331/1‑93 (MQ=255)
aaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCt < 1:2993738/93‑1 (MQ=255)
aCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCtt > 2:2979286/1‑93 (MQ=255)
aCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCtt > 1:2941119/1‑93 (MQ=255)
cccGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTg > 1:5120501/1‑93 (MQ=255)
ccGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTgg > 1:1605406/1‑92 (MQ=255)
ccGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGc < 2:3144136/93‑1 (MQ=255)
ccGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGc < 1:1256471/93‑1 (MQ=255)
cGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCg < 1:3401095/93‑1 (MQ=255)
gATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGGCGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCgg < 1:3706358/93‑1 (MQ=255)
tACCCACTTCTTTCAGCAGTAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTg > 2:6161006/1‑93 (MQ=255)
cccACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCt < 2:5224066/93‑1 (MQ=255)
|
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCT > NC_000913/4149110‑4149289
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > NC_000913/4149107‑4149293
|
ATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCA > SRR4302533.5488140/1‑94 (MQ=60)
ATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCA > SRR4302533.5664930/1‑94 (MQ=60)
TATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCAC > SRR4302533.5080198/1‑94 (MQ=60)
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTT < SRR4302533.923454/94‑1 (MQ=60)
AGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTT > SRR4302533.1133030/1‑94 (MQ=60)
AGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTT < SRR4302533.2674026/94‑1 (MQ=60)
GCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTT < SRR4302533.5305065/94‑1 (MQ=60)
CAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTC > SRR4302533.501016/1‑94 (MQ=60)
CAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTC < SRR4302533.5722527/94‑1 (MQ=60)
AGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCC > SRR4302533.2156608/1‑94 (MQ=60)
AGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCA > SRR4302533.488128/1‑94 (MQ=60)
AGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCA > SRR4302533.5179928/1‑94 (MQ=60)
AGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCA < SRR4302533.2295712/94‑1 (MQ=60)
GCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCACACAGCGGAGAAACCGGCATCGCAAACCCGATACCCACATCTTTCAG < SRR4302533.6336790/94‑1 (MQ=60)
GCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAG < SRR4302533.4950572/94‑1 (MQ=60)
CTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGC > SRR4302533.4800711/1‑94 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCA < SRR4302533.2864457/94‑1 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCA > SRR4302533.3570927/1‑94 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCA < SRR4302533.382795/94‑1 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGAAACCGGCATCGCACACCCGATACCCACTTTTTTCAGCA > SRR4302533.3875876/1‑94 (MQ=60)
GGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAG < SRR4302533.392362/94‑1 (MQ=60)
GTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCA < SRR4302533.4111466/94‑1 (MQ=60)
TCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAG < SRR4302533.535866/94‑1 (MQ=60)
TCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAG < SRR4302533.2385353/94‑1 (MQ=60)
TCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAG < SRR4302533.6248397/94‑1 (MQ=60)
TCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAG > SRR4302533.3879884/1‑94 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGG > SRR4302533.3585919/1‑94 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGGTCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT > SRR4302533.1045249/1‑94 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT < SRR4302533.3068710/94‑1 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT > SRR4302533.2304024/1‑94 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT < SRR4302533.32021/94‑1 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT > SRR4302533.4204950/1‑94 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT < SRR4302533.5529218/94‑1 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACC‑GCCTCGCAAAACCGATACCCACTTTTTTCAGCCGCAGGTG > SRR4302533.4071370/1‑94 (MQ=60)
TGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTG > SRR4302533.5294428/1‑94 (MQ=60)
TGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTG < SRR4302533.2613684/94‑1 (MQ=60)
GACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGG < SRR4302533.5138103/94‑1 (MQ=60)
GACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGG < SRR4302533.1665165/94‑1 (MQ=60)
ACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGA < SRR4302533.5657618/94‑1 (MQ=60)
ACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGA > SRR4302533.2524558/1‑94 (MQ=60)
CATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGGGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAA > SRR4302533.4468193/1‑94 (MQ=60)
CATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAC > SRR4302533.4898698/1‑94 (MQ=60)
CATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAC > SRR4302533.3272920/1‑94 (MQ=60)
ATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACA < SRR4302533.698421/94‑1 (MQ=60)
ATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACA > SRR4302533.1323396/1‑94 (MQ=60)
TCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAG < SRR4302533.307307/94‑1 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC < SRR4302533.2200660/94‑1 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC > SRR4302533.1583862/1‑94 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC < SRR4302533.5953583/94‑1 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGATTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC > SRR4302533.3219008/1‑94 (MQ=60)
TTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACACCCA > SRR4302533.3973478/1‑94 (MQ=60)
GTCGTTGTTCAGATCATCGAGGGTTTCAACCAGCGGAGCAACCGGCATCGCAACCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGT < SRR4302533.5679423/94‑1 (MQ=60)
GGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGT > SRR4302533.2689376/1‑94 (MQ=60)
CGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC < SRR4302533.4640298/94‑1 (MQ=60)
CGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC > SRR4302533.4947418/1‑94 (MQ=60)
CGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC > SRR4302533.5739030/1‑94 (MQ=60)
CGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC < SRR4302533.4899148/94‑1 (MQ=60)
GTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACG < SRR4302533.1715224/94‑1 (MQ=60)
GTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGAAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACG > SRR4302533.927379/1‑94 (MQ=60)
TGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTC > SRR4302533.2074421/1‑94 (MQ=60)
GTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCG > SRR4302533.2644519/1‑94 (MQ=60)
TTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGG < SRR4302533.1861626/94‑1 (MQ=60)
TCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGA < SRR4302533.56418/94‑1 (MQ=60)
TCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGA < SRR4302533.310961/94‑1 (MQ=60)
CAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGAC < SRR4302533.3228324/94‑1 (MQ=60)
AGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG < SRR4302533.1440644/94‑1 (MQ=60)
AGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG < SRR4302533.5168739/94‑1 (MQ=60)
AGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG < SRR4302533.2119225/94‑1 (MQ=60)
AGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG > SRR4302533.151493/1‑94 (MQ=60)
AGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG > SRR4302533.5527966/1‑94 (MQ=60)
GATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGG < SRR4302533.4032800/94‑1 (MQ=60)
GATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGG < SRR4302533.1901578/94‑1 (MQ=60)
TCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCG > SRR4302533.3948067/1‑94 (MQ=60)
CATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGT > SRR4302533.2926309/1‑94 (MQ=60)
CATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGT > SRR4302533.5138599/1‑94 (MQ=60)
ATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATGCCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTT < SRR4302533.3217671/94‑1 (MQ=60)
ATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTT > SRR4302533.4185097/1‑94 (MQ=60)
ATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTT > SRR4302533.5201233/1‑94 (MQ=60)
ATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTT < SRR4302533.4323718/94‑1 (MQ=60)
CGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGCAGGCGTTTT > SRR4302533.6090636/1‑94 (MQ=60)
CGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTT < SRR4302533.636332/94‑1 (MQ=60)
CGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTT > SRR4302533.5026841/1‑94 (MQ=60)
CGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTT > SRR4302533.5825469/1‑94 (MQ=60)
GAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTC < SRR4302533.403198/94‑1 (MQ=60)
AGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCG < SRR4302533.1355216/94‑1 (MQ=60)
GGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGC > SRR4302533.2288498/1‑94 (MQ=60)
GGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCC > SRR4302533.3939978/1‑94 (MQ=60)
GTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCA < SRR4302533.670954/94‑1 (MQ=60)
GTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCA < SRR4302533.3669939/94‑1 (MQ=60)
GTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCA < SRR4302533.5351789/94‑1 (MQ=60)
TCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCG < SRR4302533.3288613/94‑1 (MQ=60)
CAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGA > SRR4302533.4340164/1‑94 (MQ=60)
AAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAG < SRR4302533.921420/94‑1 (MQ=60)
AACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGA > SRR4302533.2332389/1‑94 (MQ=60)
AACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGA > SRR4302533.4742879/1‑94 (MQ=60)
ACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGAT > SRR4302533.3751507/1‑94 (MQ=60)
CAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATC < SRR4302533.4738964/94‑1 (MQ=60)
CAGCGGAGCAACCGGCAGCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATC < SRR4302533.682575/94‑1 (MQ=60)
AGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCA < SRR4302533.2107091/94‑1 (MQ=60)
GCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCAC < SRR4302533.3439331/94‑1 (MQ=60)
GGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGT > SRR4302533.3326879/1‑94 (MQ=60)
GAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTA > SRR4302533.2553166/1‑94 (MQ=60)
GAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTA > SRR4302533.4957256/1‑94 (MQ=60)
AGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAG < SRR4302533.28897/94‑1 (MQ=60)
AGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAG < SRR4302533.549887/94‑1 (MQ=60)
AGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAG < SRR4302533.512905/94‑1 (MQ=60)
AGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAG > SRR4302533.4122048/1‑94 (MQ=60)
GCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGG < SRR4302533.5380991/94‑1 (MQ=60)
GCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGG < SRR4302533.5458475/94‑1 (MQ=60)
CAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGG > SRR4302533.5500231/1‑94 (MQ=60)
CAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGC < SRR4302533.3720865/94‑1 (MQ=60)
CAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGC > SRR4302533.2918153/1‑94 (MQ=60)
AACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCG > SRR4302533.5934989/1‑94 (MQ=60)
AACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCG > SRR4302533.3457102/1‑94 (MQ=60)
AACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCG > SRR4302533.3457103/1‑94 (MQ=60)
AACCGGCATCGCAAACCCGATACCCACTGCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCG < SRR4302533.2703992/94‑1 (MQ=60)
ACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGG < SRR4302533.1819534/94‑1 (MQ=60)
ACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGG > SRR4302533.5150101/1‑94 (MQ=60)
ACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGG > SRR4302533.4612704/1‑94 (MQ=60)
CGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCA > SRR4302533.1758787/1‑94 (MQ=60)
GGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAA < SRR4302533.2743670/94‑1 (MQ=60)
GGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAA > SRR4302533.2595130/1‑94 (MQ=60)
GGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAA > SRR4302533.745134/1‑94 (MQ=60)
CATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATG > SRR4302533.3430695/1‑94 (MQ=60)
ATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGG < SRR4302533.5686889/94‑1 (MQ=60)
ATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGG < SRR4302533.6265130/94‑1 (MQ=60)
ATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGG > SRR4302533.4233495/1‑94 (MQ=60)
TCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGA < SRR4302533.2867825/94‑1 (MQ=60)
CGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCGGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAG < SRR4302533.2696795/94‑1 (MQ=60)
CGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAG < SRR4302533.300111/94‑1 (MQ=60)
CGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAG > SRR4302533.5591145/1‑94 (MQ=60)
GCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGC > SRR4302533.1367502/1‑94 (MQ=60)
GCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGC < SRR4302533.2714981/94‑1 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT < SRR4302533.3012042/94‑1 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT > SRR4302533.2959081/1‑94 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT < SRR4302533.1545453/94‑1 (MQ=60)
ACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTG > SRR4302533.5151438/1‑94 (MQ=60)
ACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTG < SRR4302533.6128724/94‑1 (MQ=60)
CCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGGAATGGAGCCTTGC > SRR4302533.3623824/1‑94 (MQ=60)
CCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGG > SRR4302533.1615125/1‑94 (MQ=60)
CCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCG < SRR4302533.1263983/94‑1 (MQ=60)
CGATTCCCACTTCTTACAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGG < SRR4302533.2738213/94‑1 (MQ=60)
CGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGG > SRR4302533.4027945/1‑94 (MQ=60)
CGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGG < SRR4302533.3422096/94‑1 (MQ=60)
GATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGGCGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGT < SRR4302533.3729123/94‑1 (MQ=60)
ATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTG > SRR4302533.4212012/1‑94 (MQ=60)
CCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTT > SRR4302533.5564090/1‑94 (MQ=60)
CCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTT > SRR4302533.2712575/1‑94 (MQ=60)
CCTCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTC < SRR4302533.4053822/94‑1 (MQ=60)
CCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTC > SRR4302533.4633233/1‑94 (MQ=60)
CCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTC < SRR4302533.918376/94‑1 (MQ=60)
CCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTC < SRR4302533.357533/94‑1 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACTTAGGCGGCAATGGAGCCTTGCGGTGCTTCG > SRR4302533.4088111/1‑94 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCGATGGAGCCTTGCGGTGCTTCG > SRR4302533.2790951/1‑94 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCG < SRR4302533.4764799/94‑1 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCG > SRR4302533.2102028/1‑94 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCG > SRR4302533.2814102/1‑94 (MQ=60)
CCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG < SRR4302533.4386732/94‑1 (MQ=60)
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ATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > NC_000913/4149107‑4149293
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
