Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,152,979 G→A G134S (GGT→AGT)  argC → N‑acetyl‑gamma‑glutamylphosphate reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,152,9790GA100.0% 868.0 / NA 231G134S (GGT→AGT) argCN‑acetyl‑gamma‑glutamylphosphate reductase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (106/125);  total (106/125)

Only 100 of 234 total aligned reads displayed.

GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG  >  NC_000913/4152890‑4153068
                                                                                         |                                                                                         
gcgcGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTc                                                                                        <  1:1265963/93‑1 (MQ=255)
gcgcGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTc                                                                                        <  1:1660284/93‑1 (MQ=255)
 cgcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCt                                                                                       >  1:690300/1‑93 (MQ=255)
 cgcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCt                                                                                       <  1:274532/93‑1 (MQ=255)
 cgcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCt                                                                                       <  1:2602007/93‑1 (MQ=255)
  gcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTg                                                                                      >  1:4777190/1‑93 (MQ=255)
    gTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGc                                                                                    >  2:4776123/1‑93 (MQ=255)
    gTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGc                                                                                    <  1:502808/93‑1 (MQ=255)
    gTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGc                                                                                    <  1:1581489/93‑1 (MQ=255)
    gTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGc                                                                                    >  2:5956912/1‑93 (MQ=255)
    gTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCCGAACTGTTGGAACAGGCAGCCTACAGTCTggg                                                                                    >  2:3915094/1‑92 (MQ=255)
     tttCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCg                                                                                   >  1:3089416/1‑93 (MQ=255)
     tttCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCg                                                                                   >  2:683748/1‑93 (MQ=255)
        cGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAg                                                                                <  1:617715/93‑1 (MQ=255)
        cGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAg                                                                                <  1:5836/93‑1 (MQ=255)
         gtgtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgt                                                                               <  2:5861522/93‑1 (MQ=255)
         gtgtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgg                                                                               >  2:5604865/1‑92 (MQ=255)
          tgtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtg                                                                              <  1:4118264/93‑1 (MQ=255)
           gtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtgg                                                                             >  2:5214183/1‑93 (MQ=255)
           gtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtgg                                                                             <  2:3231826/93‑1 (MQ=255)
           gtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtgg                                                                             >  2:2105896/1‑93 (MQ=255)
            ttAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggt                                                                            >  1:2058095/1‑93 (MQ=255)
            ttAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAggggt                                                                            >  1:1306938/1‑93 (MQ=255)
               acgacgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCg                                                                         <  1:3771477/93‑1 (MQ=255)
               acgacgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGATGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCg                                                                         <  1:5913346/93‑1 (MQ=255)
                   cgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaa                                                                     <  2:3054356/93‑1 (MQ=255)
                   cgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaa                                                                     <  2:613251/93‑1 (MQ=255)
                    gCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaat                                                                    <  2:3111034/93‑1 (MQ=255)
                      cACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaataa                                                                  >  2:5415862/1‑93 (MQ=255)
                      cACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaataa                                                                  <  2:29354/93‑1 (MQ=255)
                       aCCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATaaa                                                                 <  1:3792761/93‑1 (MQ=255)
                        ccTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGCACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGGGGTGCGGTAATAAAt                                                                >  1:457234/1‑93 (MQ=255)
                        ccTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAt                                                                >  1:1799237/1‑93 (MQ=255)
                         cTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAtt                                                               >  2:3004975/1‑93 (MQ=255)
                           tCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTaa                                                             <  2:4478177/93‑1 (MQ=255)
                            cTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTaaa                                                            >  1:4182637/1‑93 (MQ=255)
                               tGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaaga                                                         <  1:1479082/93‑1 (MQ=255)
                                 aaaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaagaag                                                       <  2:2950449/93‑1 (MQ=255)
                                  aaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGc                                                      <  1:1783668/93‑1 (MQ=255)
                                   aaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCg                                                     <  2:2803364/93‑1 (MQ=255)
                                   aaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCg                                                     <  1:5552101/93‑1 (MQ=255)
                                    aaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGa                                                    <  2:6281277/93‑1 (MQ=255)
                                     atatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGaa                                                   <  2:5548662/93‑1 (MQ=255)
                                      tatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAt                                                  >  1:5685347/1‑93 (MQ=255)
                                      tatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAt                                                  >  2:1444267/1‑93 (MQ=255)
                                       atTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAtt                                                 <  2:4160449/93‑1 (MQ=255)
                                        ttACGGCTTTACCCATCAATGCCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAttt                                                <  2:4260112/93‑1 (MQ=255)
                                          aCGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGa                                              <  1:1727829/93‑1 (MQ=255)
                                           cGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAt                                             <  1:5332009/93‑1 (MQ=255)
                                           cGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAt                                             >  2:1206757/1‑93 (MQ=255)
                                             gCTTTACCCATTAATGCCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTg                                           <  1:5400003/93‑1 (MQ=255)
                                             gCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTg                                           <  2:2469498/93‑1 (MQ=255)
                                             gCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTg                                           >  1:4853306/1‑93 (MQ=255)
                                              cTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGc                                          >  2:4820681/1‑93 (MQ=255)
                                               tttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCg                                         >  2:924250/1‑93 (MQ=255)
                                               tttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCg                                         >  1:4480440/1‑93 (MQ=255)
                                               tttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTCATTGCg                                         >  1:3896302/1‑93 (MQ=255)
                                                ttACCCATCATTACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCgg                                        >  1:506505/1‑93 (MQ=255)
                                                ttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCgg                                        <  2:1316769/93‑1 (MQ=255)
                                                ttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCgg                                        <  2:873637/93‑1 (MQ=255)
                                                ttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCgg                                        >  2:2004122/1‑93 (MQ=255)
                                                ttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCgg                                        >  2:1562553/1‑93 (MQ=255)
                                                 tACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGGAGCGAATTTGATTGCGGt                                       >  2:5181024/1‑93 (MQ=255)
                                                 tACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGt                                       <  2:4336581/93‑1 (MQ=255)
                                                  aCCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTg                                      <  1:225127/93‑1 (MQ=255)
                                                   cccATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGc                                     <  2:4156405/93‑1 (MQ=255)
                                                    ccATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGcc                                    >  1:4900706/1‑93 (MQ=255)
                                                    ccATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGcc                                    <  2:1765749/93‑1 (MQ=255)
                                                    ccATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGcc                                    >  2:2826299/1‑93 (MQ=255)
                                                     cATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCg                                   >  2:6233304/1‑93 (MQ=255)
                                                       tCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCggg                                 >  2:2776949/1‑93 (MQ=255)
                                                       tCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCggg                                 >  2:2343091/1‑93 (MQ=255)
                                                        cAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGc                                <  2:5371553/93‑1 (MQ=255)
                                                        cAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGc                                <  2:3143842/93‑1 (MQ=255)
                                                         aaTACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTTATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCt                               >  1:3475668/1‑93 (MQ=255)
                                                          aTACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCTGTAATAAATTAAAAGAAGCGAATTTGATTCCGGGGCCGGGCtc                              >  1:116085/1‑92 (MQ=255)
                                                           tACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGt                             >  2:5700135/1‑93 (MQ=255)
                                                           tACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGt                             >  1:1125168/1‑93 (MQ=255)
                                                           tACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGt                             >  1:4073941/1‑93 (MQ=255)
                                                            aCCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGtt                            <  1:183049/93‑1 (MQ=255)
                                                              ccGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTAt                          >  2:5287945/1‑93 (MQ=255)
                                                                ggAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATcc                        >  1:5751636/1‑93 (MQ=255)
                                                                   aCTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGGGCCGGGCTGTTATCCGAc                     >  1:963188/1‑93 (MQ=255)
                                                                     tGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAcgg                   >  1:5604112/1‑93 (MQ=255)
                                                                      gTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAcggc                  >  1:6284805/1‑93 (MQ=255)
                                                                          gAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAcggcggtc              >  1:3430548/1‑91 (MQ=255)
                                                                          gAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGca              <  2:335054/93‑1 (MQ=255)
                                                                          gAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGca              <  1:2641161/93‑1 (MQ=255)
                                                                          gAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGca              >  2:4890905/1‑93 (MQ=255)
                                                                           aaCAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGcac             <  1:3599719/93‑1 (MQ=255)
                                                                               ggCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCt         <  1:811235/93‑1 (MQ=255)
                                                                                gCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTg        >  2:516510/1‑93 (MQ=255)
                                                                                  aGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGCGCCGTTATCCGACGGCGGCACAGCTGgc      >  1:2339243/1‑93 (MQ=255)
                                                                                   gCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGgcg     >  2:1932978/1‑93 (MQ=255)
                                                                                     cTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCt   <  2:3491081/93‑1 (MQ=255)
                                                                                     cTACAGTCTGGCGGAGGGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCt   >  2:1844580/1‑93 (MQ=255)
                                                                                      tACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTg  <  2:1116444/93‑1 (MQ=255)
                                                                                      tACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTg  >  1:3274916/1‑93 (MQ=255)
                                                                                      tACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTg  <  1:2842824/93‑1 (MQ=255)
                                                                                      tACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTg  >  1:1038819/1‑93 (MQ=255)
                                                                                         |                                                                                         
GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG  >  NC_000913/4152890‑4153068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAAC  >  NC_000913/4152887‑4153072
                                                                                            |                                                                                             
CCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAG                                                                                              <  SRR4302533.1648295/94‑1 (MQ=60)
 CGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGT                                                                                             <  SRR4302533.1896890/94‑1 (MQ=60)
   GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCT                                                                                           >  SRR4302533.694381/1‑94 (MQ=60)
   GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCT                                                                                           <  SRR4302533.1670323/94‑1 (MQ=60)
   GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCT                                                                                           <  SRR4302533.1273538/94‑1 (MQ=60)
    CGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTG                                                                                          >  SRR4302533.4806127/1‑94 (MQ=60)
    CGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTG                                                                                          <  SRR4302533.2617996/94‑1 (MQ=60)
    CGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTG                                                                                          <  SRR4302533.276203/94‑1 (MQ=60)
      CGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGC                                                                                        <  SRR4302533.2064594/94‑1 (MQ=60)
      CGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGC                                                                                        <  SRR4302533.5687313/94‑1 (MQ=60)
       GTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCG                                                                                       <  SRR4302533.1591014/94‑1 (MQ=60)
       GTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCG                                                                                       >  SRR4302533.3418593/1‑94 (MQ=60)
       GTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCG                                                                                       >  SRR4302533.3108406/1‑94 (MQ=60)
       GTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCG                                                                                       <  SRR4302533.505797/94‑1 (MQ=60)
         TTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGA                                                                                     <  SRR4302533.1211319/94‑1 (MQ=60)
         TTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGA                                                                                     <  SRR4302533.959729/94‑1 (MQ=60)
           CGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGT                                                                                   <  SRR4302533.5891/94‑1 (MQ=60)
           CGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGT                                                                                   <  SRR4302533.3208061/94‑1 (MQ=60)
           CGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGT                                                                                   <  SRR4302533.621335/94‑1 (MQ=60)
           CGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGG                                                                                   >  SRR4302533.5537943/1‑94 (MQ=60)
            GTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTG                                                                                  <  SRR4302533.623198/94‑1 (MQ=60)
             TGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGG                                                                                 <  SRR4302533.4143278/94‑1 (MQ=60)
              GTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGT                                                                                >  SRR4302533.2070785/1‑94 (MQ=60)
              GTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGGGGT                                                                                >  SRR4302533.1314787/1‑94 (MQ=60)
                TAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGC                                                                              <  SRR4302533.4529704/94‑1 (MQ=60)
                 AACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCG                                                                             >  SRR4302533.1291608/1‑94 (MQ=60)
                 AACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCG                                                                             <  SRR4302533.5093192/94‑1 (MQ=60)
                  ACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGG                                                                            <  SRR4302533.3794596/94‑1 (MQ=60)
                  ACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGATGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGG                                                                            <  SRR4302533.5949081/94‑1 (MQ=60)
                   CGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGT                                                                           <  SRR4302533.391478/94‑1 (MQ=60)
                   CGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGT                                                                           >  SRR4302533.2677286/1‑94 (MQ=60)
                         CACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAA                                                                     >  SRR4302533.3522600/1‑94 (MQ=60)
                         CACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAA                                                                     <  SRR4302533.5385649/94‑1 (MQ=60)
                         CACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGGGGTGCGGTAATAAA                                                                     >  SRR4302533.5091544/1‑94 (MQ=60)
                          ACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGCACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGGGGTGCGGTAATAAAT                                                                    >  SRR4302533.459969/1‑94 (MQ=60)
                          ACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAT                                                                    <  SRR4302533.3815977/94‑1 (MQ=60)
                          ACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAT                                                                    >  SRR4302533.1810184/1‑94 (MQ=60)
                          ACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAT                                                                    >  SRR4302533.996394/1‑94 (MQ=60)
                             TTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAA                                                                 <  SRR4302533.4836418/94‑1 (MQ=60)
                             TTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAA                                                                 <  SRR4302533.2828917/94‑1 (MQ=60)
                             TTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAA                                                                 <  SRR4302533.2626644/94‑1 (MQ=60)
                              TCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTCCAGTCTGGCGGAGTGGCGCGGTAATAAATTAAA                                                                >  SRR4302533.4217321/1‑94 (MQ=60)
                              TCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAA                                                                >  SRR4302533.4207968/1‑94 (MQ=60)
                              TCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAA                                                                <  SRR4302533.748767/94‑1 (MQ=60)
                               CTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAA                                                               >  SRR4302533.2833063/1‑94 (MQ=60)
                                 ATGAAAAATATTACGGCTTTGCCCATCAATACCCGGACCTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGC‑GTAATAAATTAAAAGAA                                                            <  SRR4302533.1488017/94‑1 (MQ=60)
                                 ATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGA                                                             >  SRR4302533.5499698/1‑94 (MQ=60)
                                 ATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGA                                                             <  SRR4302533.5779128/94‑1 (MQ=60)
                                 ATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGA                                                             <  SRR4302533.1371519/94‑1 (MQ=60)
                                  TGAAAAATATTACGGCTTTTCCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAA                                                            <  SRR4302533.529882/94‑1 (MQ=60)
                                  TGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAA                                                            <  SRR4302533.1832681/94‑1 (MQ=60)
                                  TGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAA                                                            <  SRR4302533.4949298/94‑1 (MQ=60)
                                  TGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAA                                                            <  SRR4302533.1488016/94‑1 (MQ=60)
                                   GAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAG                                                           <  SRR4302533.2440965/94‑1 (MQ=60)
                                     AAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCG                                                         <  SRR4302533.1056504/94‑1 (MQ=60)
                                     AAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCG                                                         <  SRR4302533.1794515/94‑1 (MQ=60)
                                     AAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCG                                                         <  SRR4302533.1714294/94‑1 (MQ=60)
                                      AAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGA                                                        <  SRR4302533.670385/94‑1 (MQ=60)
                                      AAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGA                                                        <  SRR4302533.5585630/94‑1 (MQ=60)
                                        ATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAT                                                      >  SRR4302533.5719689/1‑94 (MQ=60)
                                             ACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAT                                                 <  SRR4302533.1738313/94‑1 (MQ=60)
                                             ACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAT                                                 <  SRR4302533.1738312/94‑1 (MQ=60)
                                             ACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAT                                                 <  SRR4302533.3805065/94‑1 (MQ=60)
                                              CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                                >  SRR4302533.1142948/1‑94 (MQ=60)
                                              CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                                <  SRR4302533.5363965/94‑1 (MQ=60)
                                              CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                                >  SRR4302533.418801/1‑94 (MQ=60)
                                              CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                                >  SRR4302533.4130306/1‑94 (MQ=60)
                                               GGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTG                                               <  SRR4302533.5880431/94‑1 (MQ=60)
                                               GGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTG                                               >  SRR4302533.1225209/1‑94 (MQ=60)
                                               GGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTG                                               <  SRR4302533.47340/94‑1 (MQ=60)
                                               GGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTG                                               >  SRR4302533.4882718/1‑94 (MQ=60)
                                                GCTTTACCCATTAATGCCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGC                                              <  SRR4302533.5432451/94‑1 (MQ=60)
                                                 CTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCG                                             >  SRR4302533.4507544/1‑94 (MQ=60)
                                                 CTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTCATTGCG                                             >  SRR4302533.3920077/1‑94 (MQ=60)
                                                  TTTACCCATCATTACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGG                                            >  SRR4302533.509512/1‑94 (MQ=60)
                                                  TTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGG                                            <  SRR4302533.3627098/94‑1 (MQ=60)
                                                    TACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGAGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTG                                          >  SRR4302533.3720495/1‑94 (MQ=60)
                                                     ACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGC                                         <  SRR4302533.226533/94‑1 (MQ=60)
                                                      CCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCC                                        >  SRR4302533.4930399/1‑94 (MQ=60)
                                                       CCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCG                                       >  SRR4302533.5772169/1‑94 (MQ=60)
                                                        CATCAAGGCCCGGAACTGTGGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGG                                      <  SRR4302533.4095339/94‑1 (MQ=60)
                                                         ATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGG                                     >  SRR4302533.585820/1‑94 (MQ=60)
                                                           CAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTTATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCT                                   >  SRR4302533.3497115/1‑94 (MQ=60)
                                                           CAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCT                                   <  SRR4302533.233064/94‑1 (MQ=60)
                                                            AATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCTGTAATAAATTAAAAGAAGCGAATTTGATTCCGGGGCCGGGCTC                                  >  SRR4302533.116824/1‑94 (MQ=60)
                                                            AATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTG                                  >  SRR4302533.6106486/1‑94 (MQ=60)
                                                             ATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGT                                 >  SRR4302533.4098743/1‑94 (MQ=60)
                                                             ATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGT                                 >  SRR4302533.4902653/1‑94 (MQ=60)
                                                             ATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGT                                 >  SRR4302533.1131844/1‑94 (MQ=60)
                                                               ACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTA                               <  SRR4302533.184185/94‑1 (MQ=60)
                                                                CCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTAT                              <  SRR4302533.1804926/94‑1 (MQ=60)
                                                                CCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTAT                              <  SRR4302533.2168158/94‑1 (MQ=60)
                                                                  CGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCC                            <  SRR4302533.3370642/94‑1 (MQ=60)
                                                                  CGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCC                            >  SRR4302533.5786335/1‑94 (MQ=60)
                                                                   GGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCG                           <  SRR4302533.1659731/94‑1 (MQ=60)
                                                                    GAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGA                          >  SRR4302533.179044/1‑94 (MQ=60)
                                                                     AACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAC                         <  SRR4302533.1543552/94‑1 (MQ=60)
                                                                     AACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAC                         >  SRR4302533.3483489/1‑94 (MQ=60)
                                                                     AACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGGGCCGGGCTGTTATCCGAC                         >  SRR4302533.968846/1‑94 (MQ=60)
                                                                      ACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACG                        <  SRR4302533.4867/94‑1 (MQ=60)
                                                                       CTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGG                       >  SRR4302533.5637970/1‑94 (MQ=60)
                                                                        TGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGC                      >  SRR4302533.746791/1‑94 (MQ=60)
                                                                        TGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGC                      >  SRR4302533.6322307/1‑94 (MQ=60)
                                                                            GGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGtc                  >  SRR4302533.3451741/1‑92 (MQ=60)
                                                                             GAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCAC                 <  SRR4302533.2657391/94‑1 (MQ=60)
                                                                              AACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACA                <  SRR4302533.5982566/94‑1 (MQ=60)
                                                                              AACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACA                <  SRR4302533.3621866/94‑1 (MQ=60)
                                                                                 AGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCT             <  SRR4302533.3931477/94‑1 (MQ=60)
                                                                                  GGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTG            <  SRR4302533.4443217/94‑1 (MQ=60)
                                                                                  GGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTG            <  SRR4302533.815989/94‑1 (MQ=60)
                                                                                    CAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGC          >  SRR4302533.1953266/1‑94 (MQ=60)
                                                                                    CAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGCGCCGTTATCCGACGGCGGCACAGCTGGC          >  SRR4302533.2353727/1‑94 (MQ=60)
                                                                                     AGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCG         <  SRR4302533.3073345/94‑1 (MQ=60)
                                                                                     AGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCG         >  SRR4302533.5591398/1‑94 (MQ=60)
                                                                                     AGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCG         <  SRR4302533.240332/94‑1 (MQ=60)
                                                                                        CTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG      >  SRR4302533.3295133/1‑94 (MQ=60)
                                                                                        CTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG      >  SRR4302533.1044924/1‑94 (MQ=60)
                                                                                         TACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGA     >  SRR4302533.1451851/1‑94 (MQ=60)
                                                                                         TACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGA     <  SRR4302533.2860320/94‑1 (MQ=60)
                                                                                           CAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAA   <  SRR4302533.1399552/94‑1 (MQ=60)
                                                                                           CAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAA   >  SRR4302533.5381978/1‑94 (MQ=60)
                                                                                           CAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAA   <  SRR4302533.1099117/94‑1 (MQ=60)
                                                                                            AGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAAC  <  SRR4302533.648592/94‑1 (MQ=60)
                                                                                            AGTCTGGCGGAGTGGTGAGGTAAGAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAAC  <  SRR4302533.5129395/94‑1 (MQ=60)
                                                                                            |                                                                                             
CCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAAC  >  NC_000913/4152887‑4153072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑