Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,277,322	C→T	S422F (TCC→TTC)	yjcD →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,277,322	0	C	T	100.0%	851.0 / NA	227	S422F (TCC→TTC)	yjcD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (131/96); total (131/96)

Only 100 of 233 total aligned reads displayed.

TGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTT  >  NC_000913/4277232‑4277411

tGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCg                                                                                         >  1:163052/1‑93 (MQ=255)

 ggTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCgg                                                                                        <  2:5768462/93‑1 (MQ=255)

   ttACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCg                                                                                      <  1:4506358/93‑1 (MQ=255)

     aCGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGaa                                                                                    <  2:3332551/93‑1 (MQ=255)

      cGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAAt                                                                                   <  1:1669957/93‑1 (MQ=255)

      cGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAAt                                                                                   <  1:1830085/93‑1 (MQ=255)

       ggCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATg                                                                                  <  1:3176906/93‑1 (MQ=255)

         cTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGgc                                                                                <  2:3500623/93‑1 (MQ=255)

          tGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGgcg                                                                               >  2:2223720/1‑93 (MQ=255)

           gTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGgcgc                                                                              >  2:593742/1‑93 (MQ=255)

           gTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGgcgc                                                                              >  2:3835810/1‑93 (MQ=255)

            tATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCTGCGAATGGCGCa                                                                             >  1:5672284/1‑93 (MQ=255)

            tATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGGATGGCGCa                                                                             >  2:2375865/1‑93 (MQ=255)

            tATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCa                                                                             >  2:4125684/1‑93 (MQ=255)

             aTTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCaa                                                                            >  2:731279/1‑93 (MQ=255)

             aTTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCaa                                                                            >  1:5514197/1‑93 (MQ=255)

             aTTCAGCGTGCTGACCTGTAACATCGTAACACGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCaa                                                                            <  1:665141/93‑1 (MQ=255)

              ttCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAg                                                                           <  1:909686/93‑1 (MQ=255)

               tCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGt                                                                          <  1:2274202/93‑1 (MQ=255)

                 aTCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTg                                                                        >  2:5259523/1‑93 (MQ=255)

                   cGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGaa                                                                      >  1:5116867/1‑93 (MQ=255)

                    gTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAAc                                                                     >  1:3946445/1‑93 (MQ=255)

                     tGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACa                                                                    <  2:6027795/93‑1 (MQ=255)

                     tGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACa                                                                    <  2:2951347/93‑1 (MQ=255)

                     tGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACa                                                                    <  1:827301/93‑1 (MQ=255)

                      gCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACAt                                                                   <  2:531180/93‑1 (MQ=255)

                      gCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTCAACAt                                                                   >  1:722081/1‑93 (MQ=255)

                       cTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATc                                                                  <  1:1400278/93‑1 (MQ=255)

                       cTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATc                                                                  >  2:5584224/1‑93 (MQ=255)

                        tGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCg                                                                 >  1:1319066/1‑93 (MQ=255)

                         gACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCgg                                                                >  1:1132734/1‑93 (MQ=255)

                          aCCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGt                                                               >  2:6139119/1‑93 (MQ=255)

                          aCCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGt                                                               <  2:3541149/93‑1 (MQ=255)

                           ccTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTa                                                              <  1:3313259/93‑1 (MQ=255)

                            cTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTAc                                                             >  2:4319320/1‑93 (MQ=255)

                            cTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTAc                                                             >  1:2077310/1‑93 (MQ=255)

                             tGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACg                                                            >  2:590413/1‑93 (MQ=255)

                             tGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACg                                                            >  2:663955/1‑93 (MQ=255)

                              gTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACgg                                                           <  1:3745381/93‑1 (MQ=255)

                               tAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGt                                                          >  1:4462267/1‑93 (MQ=255)

                               tAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGt                                                          <  1:1951887/93‑1 (MQ=255)

                               tAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGt                                                          <  2:4921851/93‑1 (MQ=255)

                                 aCATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCg                                                        >  1:5434310/1‑93 (MQ=255)

                                   aTCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGtt                                                      >  2:5542989/1‑93 (MQ=255)

                                    tCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTa                                                     >  1:2586670/1‑93 (MQ=255)

                                    tCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTa                                                     <  1:4186589/93‑1 (MQ=255)

                                    tCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTa                                                     >  1:5280686/1‑93 (MQ=255)

                                     cGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTAt                                                    >  2:5214432/1‑93 (MQ=255)

                                     cGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTAt                                                    <  2:1900692/93‑1 (MQ=255)

                                      gTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATc                                                   <  1:2033582/93‑1 (MQ=255)

                                       tAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTTTCg                                                  >  2:1993203/1‑93 (MQ=255)

                                        aaCAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGc                                                 <  1:2397025/93‑1 (MQ=255)

                                        aaCAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGc                                                 >  2:3866867/1‑93 (MQ=255)

                                         aCAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGcc                                                >  1:5346377/1‑93 (MQ=255)

                                         aCAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGcc                                                >  2:506716/1‑93 (MQ=255)

                                         aCAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGcc                                                >  2:1673005/1‑93 (MQ=255)

                                           aGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGt                                              <  1:5852912/93‑1 (MQ=255)

                                               atcatGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGgcg                                          >  2:5990922/1‑93 (MQ=255)

                                                 catGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGgcgcg                                        >  2:2332485/1‑92 (MQ=255)

                                                  atGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTg                                       <  1:5604718/93‑1 (MQ=255)

                                                   tGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTgg                                      <  2:1193557/93‑1 (MQ=255)

                                                    gATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGt                                     >  1:5511987/1‑93 (MQ=255)

                                                     gtCGGCCTCTCGTCTCTGGTGATTGGGCCTCTGGTTTTCGGCTAATGGCGCAAGTTGAACATCGGTCCGGTCGTTATCGCCGGGGCGCTGGTg                                    <  2:3179663/92‑1 (MQ=255)

                                                         gCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCt                                >  1:2779552/1‑93 (MQ=255)

                                                          cTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCtt                               >  2:191176/1‑93 (MQ=255)

                                                           ttCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTGCGGTCGTTATCGCCGTGGCGCTGGTGACCTTc                              <  1:2640948/93‑1 (MQ=255)

                                                           ttCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTc                              <  1:3194421/93‑1 (MQ=255)

                                                            tCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCt                             <  1:5973622/93‑1 (MQ=255)

                                                            tCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCt                             >  1:1600873/1‑93 (MQ=255)

                                                            tCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCt                             >  2:3961611/1‑93 (MQ=255)

                                                            tCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCt                             >  1:6038717/1‑93 (MQ=255)

                                                             cgcgACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTa                            <  2:3078085/93‑1 (MQ=255)

                                                               cgACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATg                          >  1:6189985/1‑93 (MQ=255)

                                                                gACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTTTGc                         >  1:2137289/1‑93 (MQ=255)

                                                                gACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGc                         <  2:2528035/93‑1 (MQ=255)

                                                                 aCTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCg                        <  2:3246486/93‑1 (MQ=255)

                                                                  ctctGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCgg                       >  2:1654624/1‑93 (MQ=255)

                                                                  ctctGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCgg                       >  1:2084385/1‑93 (MQ=255)

                                                                  ctctGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATCCgg                       >  1:1539459/1‑93 (MQ=255)

                                                                    ctGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGt                     <  2:795260/93‑1 (MQ=255)

                                                                     tGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTg                    >  2:4606887/1‑93 (MQ=255)

                                                                     tGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTg                    >  1:5755668/1‑93 (MQ=255)

                                                                        tGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCt                 <  1:4327639/93‑1 (MQ=255)

                                                                         gATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTg                <  1:700754/93‑1 (MQ=255)

                                                                           ttGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTggg              >  2:1180168/1‑93 (MQ=255)

                                                                              gtcgtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTa           <  2:4998720/93‑1 (MQ=255)

                                                                              gtcgtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTa           <  2:361301/93‑1 (MQ=255)

                                                                               tcgtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTAt          >  1:4667369/1‑93 (MQ=255)

                                                                                tgtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATc         <  1:4006310/92‑1 (MQ=255)

                                                                                cgtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATc         >  2:1412371/1‑93 (MQ=255)

                                                                                cgtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATc         <  1:3600626/93‑1 (MQ=255)

                                                                                cgtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATc         >  1:6245100/1‑93 (MQ=255)

                                                                                 gtcTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCt        >  2:5631153/1‑93 (MQ=255)

                                                                                   cTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTaa      <  2:2120995/93‑1 (MQ=255)

                                                                                   cTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTaa      <  1:4334584/93‑1 (MQ=255)

                                                                                     ggTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATc    >  1:1890098/1‑93 (MQ=255)

                                                                                     ggTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATc    <  1:2860818/93‑1 (MQ=255)

                                                                                     ggTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATc    >  1:4591975/1‑93 (MQ=255)

                                                                                      gTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCt   >  2:2635215/1‑93 (MQ=255)

                                                                                       ttttCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCtt  >  2:2758076/1‑93 (MQ=255)

TGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTT  >  NC_000913/4277232‑4277411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCA  >  NC_000913/4277230‑4277414

TCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGCCGTCTGGTTTTC                                                                                             >  SRR4302533.2813668/1‑94 (MQ=60)

 CTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCG                                                                                            >  SRR4302533.164090/1‑94 (MQ=60)

 CTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCG                                                                                            >  SRR4302533.2207150/1‑94 (MQ=60)

   GGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGC                                                                                          >  SRR4302533.5545626/1‑94 (MQ=60)

     TTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGA                                                                                        <  SRR4302533.4533653/94‑1 (MQ=60)

     TTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGA                                                                                        >  SRR4302533.6327775/1‑94 (MQ=60)

      TACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAA                                                                                       >  SRR4302533.2446927/1‑94 (MQ=60)

        CGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGTATCATGATCGGCTTCGCTACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATG                                                                                     <  SRR4302533.3970543/94‑1 (MQ=60)

        CGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATG                                                                                     <  SRR4302533.1680046/94‑1 (MQ=60)

        CGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATG                                                                                     <  SRR4302533.1841258/94‑1 (MQ=60)

        CGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATG                                                                                     <  SRR4302533.1593990/94‑1 (MQ=60)

         GGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGG                                                                                    <  SRR4302533.3196445/94‑1 (MQ=60)

         GGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGG                                                                                    <  SRR4302533.3304783/94‑1 (MQ=60)

         GGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGG                                                                                    >  SRR4302533.5633527/1‑94 (MQ=60)

         GGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGG                                                                                    >  SRR4302533.4324854/1‑94 (MQ=60)

           CTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCG                                                                                  >  SRR4302533.255055/1‑94 (MQ=60)

           CTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCG                                                                                  <  SRR4302533.1654056/94‑1 (MQ=60)

            TGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGC                                                                                 >  SRR4302533.925471/1‑94 (MQ=60)

             GTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCTGCGAATGGCGCA                                                                                >  SRR4302533.5706542/1‑94 (MQ=60)

             GTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCA                                                                                >  SRR4302533.3322568/1‑94 (MQ=60)

              TATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAA                                                                               >  SRR4302533.5547486/1‑94 (MQ=60)

              TATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAA                                                                               >  SRR4302533.5796270/1‑94 (MQ=60)

               ATTCAGCGTGCTGACCTGTAACATCGTAACACGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAG                                                                              <  SRR4302533.669069/94‑1 (MQ=60)

                TTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGT                                                                             <  SRR4302533.915020/94‑1 (MQ=60)

                 TCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTT                                                                            <  SRR4302533.2288277/94‑1 (MQ=60)

                 TCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTT                                                                            <  SRR4302533.5428161/94‑1 (MQ=60)

                  CATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTG                                                                           <  SRR4302533.612772/94‑1 (MQ=60)

                  CATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTG                                                                           <  SRR4302533.5647648/94‑1 (MQ=60)

                   ATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGA                                                                          >  SRR4302533.4584501/1‑94 (MQ=60)

                    TCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAA                                                                         >  SRR4302533.5147790/1‑94 (MQ=60)

                     CGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAAC                                                                        <  SRR4302533.4497816/94‑1 (MQ=60)

                     CGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAAC                                                                        >  SRR4302533.3970513/1‑94 (MQ=60)

                       TGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACAT                                                                      <  SRR4302533.832156/94‑1 (MQ=60)

                       TGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTCAACAT                                                                      >  SRR4302533.726343/1‑94 (MQ=60)

                        GCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATC                                                                     <  SRR4302533.1997207/94‑1 (MQ=60)

                         CTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCG                                                                    <  SRR4302533.1408718/94‑1 (MQ=60)

                         CTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCG                                                                    >  SRR4302533.1326980/1‑94 (MQ=60)

                          TGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGG                                                                   >  SRR4302533.1139468/1‑94 (MQ=60)

                           GACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGT                                                                  <  SRR4302533.4103057/94‑1 (MQ=60)

                             CCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTAC                                                                <  SRR4302533.3333715/94‑1 (MQ=60)

                             CCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTAC                                                                >  SRR4302533.2090095/1‑94 (MQ=60)

                              CTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACG                                                               >  SRR4302533.6021000/1‑94 (MQ=60)

                              CTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACG                                                               >  SRR4302533.2378278/1‑94 (MQ=60)

                              CTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACG                                                               >  SRR4302533.6005926/1‑94 (MQ=60)

                              CTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACG                                                               >  SRR4302533.4358860/1‑94 (MQ=60)

                                GTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGT                                                             <  SRR4302533.3768349/94‑1 (MQ=60)

                                GTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGT                                                             <  SRR4302533.2121338/94‑1 (MQ=60)

                                GTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGT                                                             >  SRR4302533.4489257/1‑94 (MQ=60)

                                 TAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTC                                                            <  SRR4302533.1963784/94‑1 (MQ=60)

                                 TAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTC                                                            >  SRR4302533.1627863/1‑94 (MQ=60)

                                  AACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCG                                                           >  SRR4302533.5467036/1‑94 (MQ=60)

                                    CATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTT                                                         <  SRR4302533.5847954/94‑1 (MQ=60)

                                     ATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTA                                                        >  SRR4302533.5312329/1‑94 (MQ=60)

                                     ATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTA                                                        >  SRR4302533.2602571/1‑94 (MQ=60)

                                      TCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTAT                                                       <  SRR4302533.4211941/94‑1 (MQ=60)

                                       CGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATC                                                      <  SRR4302533.2631931/94‑1 (MQ=60)

                                        GTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCG                                                     >  SRR4302533.2132906/1‑94 (MQ=60)

                                        GTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCG                                                     <  SRR4302533.2046127/94‑1 (MQ=60)

                                          AACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCC                                                   >  SRR4302533.5378448/1‑94 (MQ=60)

                                          AACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCC                                                   <  SRR4302533.158904/94‑1 (MQ=60)

                                          AACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCC                                                   <  SRR4302533.2411821/94‑1 (MQ=60)

                                           ACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCG                                                  <  SRR4302533.4999524/94‑1 (MQ=60)

                                             AGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTG                                                <  SRR4302533.1883917/94‑1 (MQ=60)

                                             AGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTG                                                <  SRR4302533.1931979/94‑1 (MQ=60)

                                             AGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTG                                                <  SRR4302533.5888299/94‑1 (MQ=60)

                                              GGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGG                                               <  SRR4302533.3732592/94‑1 (MQ=60)

                                               GCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGC                                              >  SRR4302533.625792/1‑94 (MQ=60)

                                                 ATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGC                                            >  SRR4302533.4530551/1‑94 (MQ=60)

                                                 ATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGC                                            >  SRR4302533.796269/1‑94 (MQ=60)

                                                  TCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCT                                           >  SRR4302533.5457989/1‑94 (MQ=60)

                                                  TCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCT                                           <  SRR4302533.1820632/94‑1 (MQ=60)

                                                   CATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTG                                          >  SRR4302533.676777/1‑94 (MQ=60)

                                                    ATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGG                                         >  SRR4302533.4445886/1‑94 (MQ=60)

                                                    ATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGG                                         <  SRR4302533.5638581/94‑1 (MQ=60)

                                                     TGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGT                                        >  SRR4302533.5545262/1‑94 (MQ=60)

                                                      GATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTG                                       <  SRR4302533.6215180/94‑1 (MQ=60)

                                                          GGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCT                                   >  SRR4302533.1299761/1‑94 (MQ=60)

                                                          GGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCT                                   >  SRR4302533.2796627/1‑94 (MQ=60)

                                                          GGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCT                                   >  SRR4302533.1779072/1‑94 (MQ=60)

                                                            CTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTC                                 >  SRR4302533.3831839/1‑94 (MQ=60)

                                                            CTTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTC                                 >  SRR4302533.913460/1‑94 (MQ=60)

                                                             TTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTGCGGTCGTTATCGCCGTGGCGCTGGTGACCTTCT                                <  SRR4302533.2657178/94‑1 (MQ=60)

                                                             TTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCT                                >  SRR4302533.6075312/1‑94 (MQ=60)

                                                             TTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCT                                <  SRR4302533.3214074/94‑1 (MQ=60)

                                                             TTCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCT                                >  SRR4302533.1610563/1‑94 (MQ=60)

                                                              TCGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTA                               <  SRR4302533.6009778/94‑1 (MQ=60)

                                                               CGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTAT                              <  SRR4302533.3060761/94‑1 (MQ=60)

                                                               CGCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTAT                              >  SRR4302533.857983/1‑94 (MQ=60)

                                                                GCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATG                             >  SRR4302533.6227130/1‑94 (MQ=60)

                                                                GCGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATG                             <  SRR4302533.5558459/94‑1 (MQ=60)

                                                                 CGACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTTTGC                            >  SRR4302533.2150469/1‑94 (MQ=60)

                                                                  GACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCG                           >  SRR4302533.2075533/1‑94 (MQ=60)

                                                                   GCTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGG                          <  SRR4302533.3552210/94‑1 (MQ=60)

                                                                   ACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGG                          >  SRR4302533.1374035/1‑94 (MQ=60)

                                                                   ACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGG                          >  SRR4302533.2097218/1‑94 (MQ=60)

                                                                   ACTCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATCCGG                          >  SRR4302533.1548730/1‑94 (MQ=60)

                                                                     TCTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGT                        <  SRR4302533.705340/94‑1 (MQ=60)

                                                                      CTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTG                       >  SRR4302533.5790401/1‑94 (MQ=60)

                                                                      CTGGTGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTG                       <  SRR4302533.1994953/94‑1 (MQ=60)

                                                                          TGATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTG                   <  SRR4302533.4353708/94‑1 (MQ=60)

                                                                           GATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGG                  <  SRR4302533.704901/94‑1 (MQ=60)

                                                                            ATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGG                 <  SRR4302533.3831223/94‑1 (MQ=60)

                                                                            ATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGG                 >  SRR4302533.1472370/1‑94 (MQ=60)

                                                                            ATTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGG                 <  SRR4302533.2802625/94‑1 (MQ=60)

                                                                             TTGGTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGC                >  SRR4302533.4252329/1‑94 (MQ=60)

                                                                                GTCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTAT             >  SRR4302533.4695647/1‑94 (MQ=60)

                                                                                 TCGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATC            >  SRR4302533.6282480/1‑94 (MQ=60)

                                                                                  TGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCT           <  SRR4302533.4030701/94‑1 (MQ=60)

                                                                                  CGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCT           <  SRR4302533.5730520/94‑1 (MQ=60)

                                                                                  CGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCT           >  SRR4302533.5270439/1‑94 (MQ=60)

                                                                                  CGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCT           <  SRR4302533.683586/94‑1 (MQ=60)

                                                                                  CGTCTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCT           <  SRR4302533.3622781/94‑1 (MQ=60)

                                                                                     CTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAAT        >  SRR4302533.533331/1‑94 (MQ=60)

                                                                                     CTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAAT        <  SRR4302533.4993156/94‑1 (MQ=60)

                                                                                     CTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAAT        >  SRR4302533.4659640/1‑94 (MQ=60)

                                                                                     CTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAAT        <  SRR4302533.4360702/94‑1 (MQ=60)

                                                                                     CTGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAAT        >  SRR4302533.2092864/1‑94 (MQ=60)

                                                                                      TGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATC       >  SRR4302533.4619792/1‑94 (MQ=60)

                                                                                      TGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATC       >  SRR4302533.1901639/1‑94 (MQ=60)

                                                                                      TGGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATC       >  SRR4302533.271839/1‑94 (MQ=60)

                                                                                       GGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCT      <  SRR4302533.5531382/94‑1 (MQ=60)

                                                                                       GGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCT      <  SRR4302533.2878418/94‑1 (MQ=60)

                                                                                       GGTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCT      >  SRR4302533.3212229/1‑94 (MQ=60)

                                                                                        GTTTTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTT     >  SRR4302533.2825194/1‑94 (MQ=60)

                                                                                           TTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCA  >  SRR4302533.1994647/1‑94 (MQ=60)

                                                                                           TTCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCA  >  SRR4302533.1144329/1‑94 (MQ=60)

TCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCA  >  NC_000913/4277230‑4277414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`