Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,282,688	T→C	A35A (GCA→GCG)	yjcH ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,282,688	0	T	C	99.5%	702.8 / NA	218	A35A (GCA→GCG)	yjcH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (92/125); minor base A (1/0); total (93/125)
Fisher's exact test for biased strand distribution p-value = 4.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 222 total aligned reads displayed.

AATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATA  >  NC_000913/4282598‑4282777

aaTACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGc                                                                                         <  2:4740910/93‑1 (MQ=255)

 aTACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGcc                                                                                        >  2:5969553/1‑93 (MQ=255)

 aTACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGcc                                                                                        <  1:1884708/93‑1 (MQ=255)

 aTACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGcc                                                                                        <  2:616084/93‑1 (MQ=255)

  tACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCa                                                                                       <  1:4987812/93‑1 (MQ=255)

  tACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCa                                                                                       >  2:2500969/1‑93 (MQ=255)

   aCCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAg                                                                                      >  2:631304/1‑93 (MQ=255)

    ccGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGc                                                                                     >  1:224003/1‑93 (MQ=255)

     cgcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCa                                                                                    <  1:4500583/93‑1 (MQ=255)

      gcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCat                                                                                   >  2:4405360/1‑93 (MQ=255)

       cgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCata                                                                                  >  1:4467181/1‑93 (MQ=255)

       cgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCata                                                                                  >  1:2058799/1‑93 (MQ=255)

         tgtgACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCataat                                                                                <  1:5511175/93‑1 (MQ=255)

         tgtgACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCataat                                                                                <  1:6241132/93‑1 (MQ=255)

         ggtgCCGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCataat                                                                                <  1:3347873/92‑1 (MQ=255)

          gtgACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCataata                                                                               <  2:1478589/93‑1 (MQ=255)

          gtgACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCataata                                                                               >  1:272411/1‑93 (MQ=255)

            gACGCTGGTGTTCGGATTCAGCGGCGTGGCCAGCCCGCCGGGCGCGAAGGCGGTCAGTAAAATAAAAACGATATAAACCGCCAGCATaataat                                                                             >  2:3234842/1‑93 (MQ=255)

             aCGCTGGTGTTCGGATTCAGCGGCGTGCCGAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATc                                                                            <  1:4410123/93‑1 (MQ=255)

               gCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGa                                                                          >  2:903147/1‑93 (MQ=255)

                cTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGAc                                                                         >  2:860107/1‑93 (MQ=255)

                  ggTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAg                                                                       <  1:1907308/93‑1 (MQ=255)

                      ttCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGAtg                                                                   <  2:1304571/93‑1 (MQ=255)

                        cGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGAtggt                                                                 <  2:529796/93‑1 (MQ=255)

                        cGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGAtggt                                                                 <  2:5620423/93‑1 (MQ=255)

                         ggATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGAtggtg                                                                <  1:1783944/93‑1 (MQ=255)

                         ggATCCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGAtggtg                                                                <  2:380738/93‑1 (MQ=255)

                          gATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGAtggtgg                                                               <  1:2490113/93‑1 (MQ=255)

                           aTTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGc                                                              <  2:5377387/93‑1 (MQ=255)

                             tCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCaa                                                            >  1:227930/1‑93 (MQ=255)

                             tCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCaa                                                            >  2:2873649/1‑93 (MQ=255)

                              cAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCaaa                                                           >  1:706445/1‑93 (MQ=255)

                               aGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAAc                                                          <  2:5825474/93‑1 (MQ=255)

                                 cggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCg                                                        <  1:3548882/93‑1 (MQ=255)

                                  ggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGt                                                       <  2:3245201/93‑1 (MQ=255)

                                  ggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGt                                                       <  1:2740631/93‑1 (MQ=255)

                                  ggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGt                                                       <  1:5170649/93‑1 (MQ=255)

                                  ggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGt                                                       <  1:5302125/93‑1 (MQ=255)

                                  ggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGt                                                       <  1:2781021/93‑1 (MQ=255)

                                   gcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGtt                                                      <  1:3010040/93‑1 (MQ=255)

                                   gcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGtt                                                      <  1:1077903/93‑1 (MQ=255)

                                    cgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTg                                                     <  1:381121/93‑1 (MQ=255)

                                     gTGCCCAGCCAGCTGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAGCCGTTGc                                                    <  1:3605899/93‑1 (MQ=255)

                                     gTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGc                                                    <  1:2397809/93‑1 (MQ=255)

                                     gTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGc                                                    >  2:4558003/1‑93 (MQ=255)

                                     gTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGc                                                    >  1:2915612/1‑93 (MQ=255)

                                      tGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGcc                                                   >  1:3168396/1‑93 (MQ=255)

                                         ccagccagCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGtt                                                >  2:3680199/1‑93 (MQ=255)

                                          cagccagcCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGttt                                               >  1:4366934/1‑93 (MQ=255)

                                             ccagccGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTc                                            <  2:2989738/93‑1 (MQ=255)

                                               agccGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGa                                          <  1:5845803/93‑1 (MQ=255)

                                               agccGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGa                                          <  2:1634701/93‑1 (MQ=255)

                                                gccGGGCGCGAAGGCGAGCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGAc                                         <  2:1971838/93‑1 (MQ=255)

                                                   gggCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTaa                                      >  1:4009045/1‑93 (MQ=255)

                                                   gggCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTaa                                      <  2:5940609/93‑1 (MQ=255)

                                                   gggCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTaa                                      >  2:3532578/1‑93 (MQ=255)

                                                    ggCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAAc                                     <  1:128520/93‑1 (MQ=255)

                                                      cgcgAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTc                                   <  1:3215600/93‑1 (MQ=255)

                                                        cgAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTccc                                 <  1:3819505/93‑1 (MQ=255)

                                                         gAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCt                                >  2:1835277/1‑93 (MQ=255)

                                                         gAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCt                                >  1:4282751/1‑93 (MQ=255)

                                                          aaGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTg                               >  2:4169020/1‑93 (MQ=255)

                                                            ggCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGaa                             >  2:6069982/1‑93 (MQ=255)

                                                               gATCAGTAAAATAAAACCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATg                          <  1:866503/93‑1 (MQ=255)

                                                                  cAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATgcgc                       <  1:3772748/93‑1 (MQ=255)

                                                                   aGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCa                      >  1:4906187/1‑93 (MQ=255)

                                                                    gTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCAt                     >  2:5772777/1‑93 (MQ=255)

                                                                    gTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCAt                     >  2:135245/1‑93 (MQ=255)

                                                                     tAAAATAAAGCCGATATAACCCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCAtt                    <  2:3412416/93‑1 (MQ=255)

                                                                     tAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCAtt                    <  2:4230087/93‑1 (MQ=255)

                                                                      aaaaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTg                   <  2:4989958/93‑1 (MQ=255)

                                                                      aaaaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTg                   >  2:2319906/1‑93 (MQ=255)

                                                                      aaaaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTg                   >  1:681840/1‑93 (MQ=255)

                                                                      aaaaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTg                   <  2:5426179/93‑1 (MQ=255)

                                                                       aaaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGt                  <  2:2071887/93‑1 (MQ=255)

                                                                       aaaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGt                  >  1:3473617/1‑93 (MQ=255)

                                                                        aaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtc                 >  2:2807/1‑93 (MQ=255)

                                                                        aaTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtc                 >  2:1686073/1‑93 (MQ=255)

                                                                         aTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtct                >  1:6011173/1‑93 (MQ=255)

                                                                         aTAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtct                <  1:4794659/93‑1 (MQ=255)

                                                                          tAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtctt               >  1:1471379/1‑93 (MQ=255)

                                                                          tAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtctt               >  1:3318932/1‑93 (MQ=255)

                                                                          tAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtctt               >  2:4500079/1‑93 (MQ=255)

                                                                            aaGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtcttct             <  2:2169650/93‑1 (MQ=255)

                                                                            aaGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGtcttct             >  1:5734077/1‑93 (MQ=255)

                                                                              gCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTAt           >  1:4587805/1‑93 (MQ=255)

                                                                               ccGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATc          <  1:2112773/93‑1 (MQ=255)

                                                                                cGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATcc         >  1:912045/1‑93 (MQ=255)

                                                                                cGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATcc         <  1:3869291/93‑1 (MQ=255)

                                                                                  atatAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATcctc       >  1:614572/1‑91 (MQ=255)

                                                                                  atatAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGc       >  1:1393109/1‑93 (MQ=255)

                                                                                  atatAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGc       <  2:3489749/93‑1 (MQ=255)

                                                                                  atatAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGc       <  1:996555/93‑1 (MQ=255)

                                                                                   tataAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCt      >  1:5597459/1‑93 (MQ=255)

                                                                                   tataAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCt      >  1:1209438/1‑93 (MQ=255)

                                                                                   tataAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTACCTGAAATGCGCATTGTCTTCTATCCGCt      >  1:5097000/1‑93 (MQ=255)

                                                                                     taAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGa    <  1:2678974/93‑1 (MQ=255)

                                                                                     aaaaCCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGa    <  1:2690855/92‑1 (MQ=255)

                                                                                      aaaCCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGAt   <  1:5994768/93‑1 (MQ=255)

                                                                                      aaaCCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGAt   >  2:2686755/1‑93 (MQ=255)

AATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATA  >  NC_000913/4282598‑4282777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATA  >  NC_000913/4282595‑4282781

TGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACC                                                                                               >  SRR4302533.2373540/1‑94 (MQ=60)

 GGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCG                                                                                              >  SRR4302533.1643198/1‑94 (MQ=60)

   AATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCC                                                                                            >  SRR4302533.2253178/1‑94 (MQ=60)

    ATACCGCGTGTGACGCTGTTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCA                                                                                           <  SRR4302533.707427/94‑1 (MQ=60)

    ATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCA                                                                                           <  SRR4302533.1896218/94‑1 (MQ=60)

     TACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAG                                                                                          <  SRR4302533.5018055/94‑1 (MQ=60)

      ACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGC                                                                                         >  SRR4302533.225401/1‑94 (MQ=60)

        CGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCAT                                                                                       <  SRR4302533.4527845/94‑1 (MQ=60)

         GCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATA                                                                                      >  SRR4302533.2071493/1‑94 (MQ=60)

         GCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATA                                                                                      <  SRR4302533.4600246/94‑1 (MQ=60)

         GCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATA                                                                                      >  SRR4302533.5220193/1‑94 (MQ=60)

         GCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATA                                                                                      >  SRR4302533.4494198/1‑94 (MQ=60)

           GTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAAT                                                                                    <  SRR4302533.2700666/94‑1 (MQ=60)

            ggtgcCGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATA                                                                                   <  SRR4302533.3368557/89‑1 (MQ=60)

            TGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATA                                                                                   >  SRR4302533.274068/1‑94 (MQ=60)

            TGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATA                                                                                   <  SRR4302533.5544447/94‑1 (MQ=60)

            TGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATA                                                                                   <  SRR4302533.6278500/94‑1 (MQ=60)

            TGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATA                                                                                   <  SRR4302533.3819248/94‑1 (MQ=60)

              TGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAAT                                                                                 <  SRR4302533.3291305/94‑1 (MQ=60)

              TGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAAT                                                                                 <  SRR4302533.3606692/94‑1 (MQ=60)

               GACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATC                                                                                <  SRR4302533.2349900/94‑1 (MQ=60)

               GACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATC                                                                                <  SRR4302533.2632279/94‑1 (MQ=60)

               GACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATC                                                                                <  SRR4302533.1905758/94‑1 (MQ=60)

               GACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATC                                                                                <  SRR4302533.2916812/94‑1 (MQ=60)

                ACGCTGGTGTTCGGATTCAGCGGCGTGCCGAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCG                                                                               <  SRR4302533.4436755/94‑1 (MQ=60)

                ACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCG                                                                               >  SRR4302533.5567203/1‑94 (MQ=60)

                ACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCG                                                                               >  SRR4302533.5134645/1‑94 (MQ=60)

                ACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCG                                                                               <  SRR4302533.4483238/94‑1 (MQ=60)

                  GCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGAC                                                                             <  SRR4302533.3889765/94‑1 (MQ=60)

                   CTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACA                                                                            <  SRR4302533.556951/94‑1 (MQ=60)

                   CTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACA                                                                            <  SRR4302533.2841087/94‑1 (MQ=60)

                   CTGGTGTGCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACA                                                                            <  SRR4302533.2994743/94‑1 (MQ=60)

                     GGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGG                                                                          <  SRR4302533.1918943/94‑1 (MQ=60)

                         TTCGGATTCAGCGGCGTGCCGAGCCAGCAGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGG                                                                      <  SRR4302533.6040715/94‑1 (MQ=60)

                          TCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGT                                                                     <  SRR4302533.3508853/94‑1 (MQ=60)

                          TCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGT                                                                     >  SRR4302533.2778984/1‑94 (MQ=60)

                          TCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGT                                                                     <  SRR4302533.4512389/94‑1 (MQ=60)

                           CGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTG                                                                    <  SRR4302533.2744756/94‑1 (MQ=60)

                            GGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGG                                                                   <  SRR4302533.3236138/94‑1 (MQ=60)

                            GGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGG                                                                   <  SRR4302533.1794791/94‑1 (MQ=60)

                            GGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGG                                                                   >  SRR4302533.2485795/1‑94 (MQ=60)

                             GATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGC                                                                  <  SRR4302533.2505449/94‑1 (MQ=60)

                             GATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGC                                                                  <  SRR4302533.857235/94‑1 (MQ=60)

                               TTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAA                                                                >  SRR4302533.229346/1‑94 (MQ=60)

                                TCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAA                                                               >  SRR4302533.710616/1‑94 (MQ=60)

                                 CAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAAC                                                              <  SRR4302533.3941426/94‑1 (MQ=60)

                                  AGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACC                                                             >  SRR4302533.4230101/1‑94 (MQ=60)

                                    CGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGT                                                           <  SRR4302533.158602/94‑1 (MQ=60)

                                    CGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGT                                                           <  SRR4302533.3570750/94‑1 (MQ=60)

                                     GGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTT                                                          <  SRR4302533.6027422/94‑1 (MQ=60)

                                     GGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTT                                                          <  SRR4302533.5201854/94‑1 (MQ=60)

                                     GGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTT                                                          >  SRR4302533.3091904/1‑94 (MQ=60)

                                     GGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTT                                                          <  SRR4302533.5333890/94‑1 (MQ=60)

                                     GGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTT                                                          <  SRR4302533.2757438/94‑1 (MQ=60)

                                     GGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTT                                                          <  SRR4302533.2798105/94‑1 (MQ=60)

                                      GCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTG                                                         <  SRR4302533.3028457/94‑1 (MQ=60)

                                      GCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTG                                                         <  SRR4302533.3400787/94‑1 (MQ=60)

                                      GCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTG                                                         <  SRR4302533.1084256/94‑1 (MQ=60)

                                       CGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGC                                                        <  SRR4302533.383417/94‑1 (MQ=60)

                                       CGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGC                                                        >  SRR4302533.2933492/1‑94 (MQ=60)

                                       CGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGC                                                        >  SRR4302533.3343887/1‑94 (MQ=60)

                                        GTGCCCAGCCAGCTGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAGCCGTTGCC                                                       <  SRR4302533.3628093/94‑1 (MQ=60)

                                        GTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCC                                                       >  SRR4302533.3187894/1‑94 (MQ=60)

                                        GTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCC                                                       <  SRR4302533.2412610/94‑1 (MQ=60)

                                            CCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTT                                                   >  SRR4302533.4393296/1‑94 (MQ=60)

                                             CAGCGAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTT                                                  <  SRR4302533.4978570/94‑1 (MQ=60)

                                             CAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTT                                                  >  SRR4302533.39782/1‑94 (MQ=60)

                                               GCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTC                                                <  SRR4302533.254041/94‑1 (MQ=60)

                                                  AGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGAC                                             >  SRR4302533.3199390/1‑94 (MQ=60)

                                                  AGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGAC                                             <  SRR4302533.5881144/94‑1 (MQ=60)

                                                  AGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGAC                                             >  SRR4302533.4519599/1‑94 (MQ=60)

                                                     CGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAA                                          >  SRR4302533.4033454/1‑94 (MQ=60)

                                                       GGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACT                                        <  SRR4302533.129325/94‑1 (MQ=60)

                                                        GCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTC                                       <  SRR4302533.2042417/94‑1 (MQ=60)

                                                         CGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCC                                      <  SRR4302533.938230/94‑1 (MQ=60)

                                                         CGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCC                                      <  SRR4302533.3757948/94‑1 (MQ=60)

                                                         CGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCC                                      <  SRR4302533.3235423/94‑1 (MQ=60)

                                                          GCGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCC                                     >  SRR4302533.1393656/1‑94 (MQ=60)

                                                           CGAAGGCGATCAGTAAAATAAAGCCGATATAACCCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCT                                    <  SRR4302533.5837210/94‑1 (MQ=60)

                                                           CGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCT                                    <  SRR4302533.3842861/94‑1 (MQ=60)

                                                           CGAAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCT                                    >  SRR4302533.4308490/1‑94 (MQ=60)

                                                             AAGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGA                                  >  SRR4302533.2274326/1‑94 (MQ=60)

                                                              AGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAA                                 >  SRR4302533.4940149/1‑94 (MQ=60)

                                                              AGGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAA                                 >  SRR4302533.3671126/1‑94 (MQ=60)

                                                               GGCGATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAA                                <  SRR4302533.867291/94‑1 (MQ=60)

                                                                GCGATCAGTAAAATAAAGCCGATATAATCCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAAT                               <  SRR4302533.2714269/94‑1 (MQ=60)

                                                                  GATCAGTAAAATAAAACCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGC                             <  SRR4302533.871580/94‑1 (MQ=60)

                                                                   ATCAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCG                            >  SRR4302533.5679050/1‑94 (MQ=60)

                                                                     CAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCA                          <  SRR4302533.3795875/94‑1 (MQ=60)

                                                                     CAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCA                          >  SRR4302533.4935914/1‑94 (MQ=60)

                                                                     CAGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCA                          >  SRR4302533.4935913/1‑94 (MQ=60)

                                                                      AGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCAT                         <  SRR4302533.3839799/94‑1 (MQ=60)

                                                                      AGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCAT                         >  SRR4302533.6199227/1‑94 (MQ=60)

                                                                      AGTAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGAAAACCGTTGCCGTTTTTCGACTAACTCCCTGACATGCGCAT                         >  SRR4302533.1890558/1‑94 (MQ=60)

                                                                        TAAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTG                       >  SRR4302533.685872/1‑94 (MQ=60)

                                                                         AAAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGT                      >  SRR4302533.3495052/1‑94 (MQ=60)

                                                                          AAATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTC                     >  SRR4302533.4784831/1‑94 (MQ=60)

                                                                           AATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCT                    >  SRR4302533.6047591/1‑94 (MQ=60)

                                                                            ATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTT                   <  SRR4302533.4823704/94‑1 (MQ=60)

                                                                            ATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTT                   >  SRR4302533.3339433/1‑94 (MQ=60)

                                                                            ATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTT                   >  SRR4302533.1480272/1‑94 (MQ=60)

                                                                            ATAAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTT                   <  SRR4302533.156623/94‑1 (MQ=60)

                                                                              AAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCT                 >  SRR4302533.5768694/1‑94 (MQ=60)

                                                                              AAAGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCT                 <  SRR4302533.655504/94‑1 (MQ=60)

                                                                                AGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTAT               >  SRR4302533.4615595/1‑94 (MQ=60)

                                                                                 GCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATC              <  SRR4302533.2137944/94‑1 (MQ=60)

                                                                                  CCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGgtggcggtttttttttctatccacccccaacagactgtttttttttt             >  SRR4302533.4082628/1‑47 (MQ=60)

                                                                                  CCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCC             >  SRR4302533.917395/1‑94 (MQ=60)

                                                                                  CCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCC             >  SRR4302533.2114064/1‑94 (MQ=60)

                                                                                  CCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCC             <  SRR4302533.2125806/94‑1 (MQ=60)

                                                                                  CCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCC             >  SRR4302533.89721/1‑94 (MQ=60)

                                                                                   CGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCG            >  SRR4302533.5414959/1‑94 (MQ=60)

                                                                                   CGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCG            <  SRR4302533.3892913/94‑1 (MQ=60)

                                                                                   CGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCG            <  SRR4302533.1435436/94‑1 (MQ=60)

                                                                                   CGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCG            <  SRR4302533.6056512/94‑1 (MQ=60)

                                                                                    GATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCTC           >  SRR4302533.618184/1‑94 (MQ=60)

                                                                                    GATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGC           >  SRR4302533.1401502/1‑94 (MQ=60)

                                                                                     ATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCT          >  SRR4302533.1216701/1‑94 (MQ=60)

                                                                                     ATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCT          <  SRR4302533.1105562/94‑1 (MQ=60)

                                                                                     ATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCT          <  SRR4302533.1002374/94‑1 (MQ=60)

                                                                                     ATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCT          >  SRR4302533.5631276/1‑94 (MQ=60)

                                                                                     ATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTACCTGAAATGCGCATTGTCTTCTATCCGCT          >  SRR4302533.5127794/1‑94 (MQ=60)

                                                                                      TATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTG         >  SRR4302533.4435124/1‑94 (MQ=60)

                                                                                      TATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTG         >  SRR4302533.4393018/1‑94 (MQ=60)

                                                                                       ATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGA        >  SRR4302533.1228520/1‑94 (MQ=60)

                                                                                       ATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGA        >  SRR4302533.5071316/1‑94 (MQ=60)

                                                                                        TAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGAT       >  SRR4302533.6038776/1‑94 (MQ=60)

                                                                                        TAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGAT       <  SRR4302533.2695395/94‑1 (MQ=60)

                                                                                        AAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGAT       <  SRR4302533.2707351/94‑1 (MQ=60)

                                                                                         AAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATA      <  SRR4302533.6031076/94‑1 (MQ=60)

                                                                                            CCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAAT   <  SRR4302533.1844369/94‑1 (MQ=60)

                                                                                            CCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAAT   <  SRR4302533.5486709/94‑1 (MQ=60)

                                                                                            CCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAAT   <  SRR4302533.3415194/94‑1 (MQ=60)

                                                                                            CCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAAT   <  SRR4302533.35332/94‑1 (MQ=60)

                                                                                             CGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATA  >  SRR4302533.1960907/1‑94 (MQ=60)

TGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAAAGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAATA  >  NC_000913/4282595‑4282781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`