Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,302,652	A→G	Y513H (TAT→CAT)	yjcS ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,302,652	0	A	G	100.0%	776.1 / NA	241	Y513H (TAT→CAT)	yjcS	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (94/147); total (94/147)

Only 100 of 249 total aligned reads displayed.

TGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATAGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCG  >  NC_000913/4302562‑4302741

tggtgCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGc                                                                                         >  1:1378579/1‑93 (MQ=255)

 ggtgCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGcc                                                                                        <  2:4396886/93‑1 (MQ=255)

    gCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAg                                                                                     <  1:2080670/93‑1 (MQ=255)

     ccGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGc                                                                                    <  2:1046636/93‑1 (MQ=255)

      cGTGGCTGAACTTATGCGCCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCt                                                                                   <  1:2517436/93‑1 (MQ=255)

       gTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTg                                                                                  >  2:1172072/1‑93 (MQ=255)

       gTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTg                                                                                  >  2:2652096/1‑93 (MQ=255)

        tGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGt                                                                                 >  1:6216334/1‑93 (MQ=255)

        tGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGt                                                                                 <  1:5638722/93‑1 (MQ=255)

         ggCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGtt                                                                                <  2:5428840/93‑1 (MQ=255)

          gCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTc                                                                               <  1:5533703/93‑1 (MQ=255)

          gCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTc                                                                               <  2:5849119/93‑1 (MQ=255)

           cTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCa                                                                              >  1:5440280/1‑93 (MQ=255)

           cTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCa                                                                              >  1:4848107/1‑93 (MQ=255)

               aCTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCCAAGt                                                                          >  2:2968090/1‑93 (MQ=255)

               aCTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGt                                                                          >  1:3096059/1‑93 (MQ=255)

                 ttATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTa                                                                        >  1:770702/1‑93 (MQ=255)

                 ttATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTa                                                                        <  1:892736/93‑1 (MQ=255)

                 ttATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTa                                                                        <  1:4296758/93‑1 (MQ=255)

                   aTGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTAtt                                                                      <  1:2897915/93‑1 (MQ=255)

                   aTGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTAtt                                                                      <  1:1852079/93‑1 (MQ=255)

                   aTGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGAGCCATGTGGCGGACTTGGCCTGATGGCCCAGCTGTTCAAAGTTAtt                                                                      >  2:1856243/1‑93 (MQ=255)

                    tGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTc                                                                     <  2:6141191/93‑1 (MQ=255)

                    tGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTc                                                                     <  1:217187/93‑1 (MQ=255)

                     gCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCg                                                                    <  1:2537504/93‑1 (MQ=255)

                      cACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGc                                                                   <  1:1001575/93‑1 (MQ=255)

                      cACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGc                                                                   <  2:2800859/93‑1 (MQ=255)

                       cccccTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCt                                                                  <  2:1556337/92‑1 (MQ=255)

                       cccccTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCt                                                                  <  2:5777382/92‑1 (MQ=255)

                       aCCCCTTCGCGCAGCTCTTTCGCGCCGGCCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCt                                                                  >  1:756928/1‑93 (MQ=255)

                        ccccTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCtt                                                                 <  2:3762368/93‑1 (MQ=255)

                         cccTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTg                                                                >  2:2168936/1‑93 (MQ=255)

                          ccTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGc                                                               <  1:720909/93‑1 (MQ=255)

                           cTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCTCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCa                                                              <  2:1033660/93‑1 (MQ=255)

                            ttCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAg                                                             >  1:3669592/1‑93 (MQ=255)

                            ttCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAg                                                             >  1:1427053/1‑93 (MQ=255)

                             tCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGa                                                            <  1:5008488/93‑1 (MQ=255)

                                 gcAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGAttct                                                        >  2:4552451/1‑93 (MQ=255)

                                  cAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGGCCAGCTGTTCAAAGTTATTCGCTTGCAGAttctt                                                       >  2:744507/1‑93 (MQ=255)

                                  cAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGAttctt                                                       >  1:3260688/1‑93 (MQ=255)

                                  cAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGAttctt                                                       <  2:3246038/93‑1 (MQ=255)

                                   aGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGAttcttc                                                      >  1:4078389/1‑93 (MQ=255)

                                    gCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcg                                                     <  2:3046733/93‑1 (MQ=255)

                                     ctctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcgc                                                    <  2:340275/93‑1 (MQ=255)

                                     ctctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcgc                                                    >  2:860792/1‑93 (MQ=255)

                                     ctctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcgc                                                    >  2:2904137/1‑93 (MQ=255)

                                     ctctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcgc                                                    >  1:1692097/1‑93 (MQ=255)

                                     ctctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcgc                                                    <  1:405461/93‑1 (MQ=255)

                                      tctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcgcg                                                   >  2:3678835/1‑93 (MQ=255)

                                       ctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTTAAAGTTATTCGCTTGCAGATTCTTCCCGa                                                  >  1:1259708/1‑93 (MQ=255)

                                       ctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTcgcgc                                                  >  2:2407371/1‑92 (MQ=255)

                                       ctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGa                                                  >  1:3716711/1‑93 (MQ=255)

                                       ctTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGa                                                  <  2:4060625/93‑1 (MQ=255)

                                         ttCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGAcc                                                >  2:5394645/1‑93 (MQ=255)

                                           cgcgCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTg                                              <  2:2085400/93‑1 (MQ=255)

                                            gcgcCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGTCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTgg                                             <  1:203882/93‑1 (MQ=255)

                                             cgcCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGt                                            <  1:2135216/93‑1 (MQ=255)

                                                cGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCAc                                         <  2:38592/93‑1 (MQ=255)

                                                 ggTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCAcc                                        <  1:671454/93‑1 (MQ=255)

                                                  gTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCAccc                                       <  1:46624/93‑1 (MQ=255)

                                                  gTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCAccc                                       <  1:835872/93‑1 (MQ=255)

                                                   tCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCg                                      <  2:5530297/93‑1 (MQ=255)

                                                      ggTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGt                                   <  1:2364972/93‑1 (MQ=255)

                                                      ggTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGt                                   >  2:4196530/1‑93 (MQ=255)

                                                       gTAGAGCCCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGtt                                  <  2:5601014/93‑1 (MQ=255)

                                                        tAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTg                                 >  2:107744/1‑93 (MQ=255)

                                                        tAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTg                                 <  2:1983211/93‑1 (MQ=255)

                                                        tAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTg                                 >  1:1538007/1‑93 (MQ=255)

                                                         aGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTgg                                <  2:4759017/93‑1 (MQ=255)

                                                         aGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTgg                                <  2:4228565/93‑1 (MQ=255)

                                                          gAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTggc                               <  1:4481258/93‑1 (MQ=255)

                                                             aCCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTggcggc                            >  2:4269348/1‑93 (MQ=255)

                                                               cgcgCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCaa                          <  1:5924256/93‑1 (MQ=255)

                                                                   ccATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCAc                      >  1:3984227/1‑93 (MQ=255)

                                                                    cATGTGGCGGACTCGTCCTGATGGCCAAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCAcc                     <  2:2970914/93‑1 (MQ=255)

                                                                    cATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCAcc                     >  2:5235305/1‑93 (MQ=255)

                                                                    cATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCAcc                     <  1:3521534/93‑1 (MQ=255)

                                                                      tgtgGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTg                   >  2:5048430/1‑93 (MQ=255)

                                                                        tgGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGtt                 >  1:491231/1‑93 (MQ=255)

                                                                        gggCGGGCTCGGCCTGATGGGCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGGCACCCGGGTTGGCGGCAATCACCTGtt                 <  1:2281152/92‑1 (MQ=255)

                                                                         ggCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGttt                <  2:4298209/93‑1 (MQ=255)

                                                                           cGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTca              <  2:1378579/93‑1 (MQ=255)

                                                                           cGGACTCGACCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTca              <  2:6189490/93‑1 (MQ=255)

                                                                             gACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTcagc            >  1:602885/1‑93 (MQ=255)

                                                                              aCTCGGCCTTATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTcagca           <  1:1154609/93‑1 (MQ=255)

                                                                              aCTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTcagca           <  2:6057909/93‑1 (MQ=255)

                                                                               cTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTcagcag          >  1:2611538/1‑93 (MQ=255)

                                                                               cTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTcagcag          <  1:3364986/93‑1 (MQ=255)

                                                                                 cGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGtt        <  1:3418733/93‑1 (MQ=255)

                                                                                  ggCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTc       <  1:2642530/93‑1 (MQ=255)

                                                                                  ggCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTc       <  1:4610755/93‑1 (MQ=255)

                                                                                   gCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCt      >  1:5184005/1‑93 (MQ=255)

                                                                                     cTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCGGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGc    <  2:4750341/93‑1 (MQ=255)

                                                                                     cTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGc    <  2:3514690/93‑1 (MQ=255)

                                                                                     cTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGc    >  2:5724529/1‑93 (MQ=255)

                                                                                     cTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGc    <  1:4161841/93‑1 (MQ=255)

                                                                                     cTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGc    >  1:5568279/1‑93 (MQ=255)

                                                                                      tGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGcc   >  1:3851398/1‑93 (MQ=255)

                                                                                      tGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGcc   >  1:1956855/1‑93 (MQ=255)

                                                                                      tGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGcc   >  2:2556127/1‑93 (MQ=255)

TGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATAGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCG  >  NC_000913/4302562‑4302741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGTGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATAGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCGACCA  >  NC_000913/4302559‑4302745

CGGTGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATG                                                                                               <  SRR4302533.4423470/94‑1 (MQ=60)

CGGTGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATG                                                                                               >  SRR4302533.25218/1‑94 (MQ=60)

CGGTGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATG                                                                                               <  SRR4302533.3672749/94‑1 (MQ=60)

  tgcttctctttctccctcccccccccccgcccccctttttttccccccCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGC                                                                                             <  SRR4302533.6294676/46‑1 (MQ=60)

  GTGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGC                                                                                             >  SRR4302533.1386873/1‑94 (MQ=60)

  GTGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGC                                                                                             <  SRR4302533.3322322/94‑1 (MQ=60)

   TGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCC                                                                                            <  SRR4302533.4067025/94‑1 (MQ=60)

       GCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGC                                                                                        <  SRR4302533.2093471/94‑1 (MQ=60)

        CCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCT                                                                                       <  SRR4302533.5182139/94‑1 (MQ=60)

        CCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCT                                                                                       <  SRR4302533.2010646/94‑1 (MQ=60)

         CGTGGCTGAACTTATGCGCCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTG                                                                                      <  SRR4302533.2532949/94‑1 (MQ=60)

          GTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGT                                                                                     <  SRR4302533.941663/94‑1 (MQ=60)

          GTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGT                                                                                     >  SRR4302533.6253610/1‑94 (MQ=60)

           TGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTT                                                                                    <  SRR4302533.5672812/94‑1 (MQ=60)

           TGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTT                                                                                    <  SRR4302533.882887/94‑1 (MQ=60)

             GCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGATACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCA                                                                                  <  SRR4302533.3408430/94‑1 (MQ=60)

             GCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCA                                                                                  >  SRR4302533.4877487/1‑94 (MQ=60)

             GCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCA                                                                                  >  SRR4302533.5473043/1‑94 (MQ=60)

             GCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCA                                                                                  <  SRR4302533.5567113/94‑1 (MQ=60)

               TGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAA                                                                                >  SRR4302533.4674403/1‑94 (MQ=60)

               TGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAA                                                                                >  SRR4302533.2527499/1‑94 (MQ=60)

                GAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAG                                                                               >  SRR4302533.266459/1‑94 (MQ=60)

                 AACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGT                                                                              >  SRR4302533.3115091/1‑94 (MQ=60)

                 AACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGT                                                                              >  SRR4302533.3234387/1‑94 (MQ=60)

                 AACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGT                                                                              <  SRR4302533.2597075/94‑1 (MQ=60)

                   CTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTA                                                                            >  SRR4302533.775239/1‑94 (MQ=60)

                    TTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTAT                                                                           <  SRR4302533.5045790/94‑1 (MQ=60)

                    TTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTAT                                                                           <  SRR4302533.897983/94‑1 (MQ=60)

                    TTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTAT                                                                           <  SRR4302533.4322598/94‑1 (MQ=60)

                     TATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATT                                                                          <  SRR4302533.257146/94‑1 (MQ=60)

                      ATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTC                                                                         <  SRR4302533.2655628/94‑1 (MQ=60)

                      ATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTC                                                                         <  SRR4302533.2915727/94‑1 (MQ=60)

                      ATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTC                                                                         <  SRR4302533.3661172/94‑1 (MQ=60)

                      ATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTC                                                                         <  SRR4302533.1863372/94‑1 (MQ=60)

                       TGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCG                                                                        <  SRR4302533.218549/94‑1 (MQ=60)

                        GCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGC                                                                       <  SRR4302533.2553127/94‑1 (MQ=60)

                         CACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGTCCCAGCTGTTCAAAGTTATTCGCT                                                                      <  SRR4302533.1784621/94‑1 (MQ=60)

                         CACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCT                                                                      <  SRR4302533.75382/94‑1 (MQ=60)

                         CACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCT                                                                      <  SRR4302533.1007423/94‑1 (MQ=60)

                         CACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCT                                                                      <  SRR4302533.559995/94‑1 (MQ=60)

                         CACCCCTTCGCGCAGCTCTTTCGCGCCGGCCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCT                                                                      >  SRR4302533.761382/1‑94 (MQ=60)

                           CCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTG                                                                    <  SRR4302533.5639232/94‑1 (MQ=60)

                            CCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGC                                                                   >  SRR4302533.796482/1‑94 (MQ=60)

                            CCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGC                                                                   >  SRR4302533.3795335/1‑94 (MQ=60)

                             CCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCA                                                                  <  SRR4302533.725162/94‑1 (MQ=60)

                              CTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAG                                                                 >  SRR4302533.3692149/1‑94 (MQ=60)

                              CTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAG                                                                 >  SRR4302533.366654/1‑94 (MQ=60)

                              CTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAG                                                                 >  SRR4302533.1435677/1‑94 (MQ=60)

                                TCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGAT                                                               <  SRR4302533.5038835/94‑1 (MQ=60)

                                  GCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTC                                                             >  SRR4302533.2545563/1‑94 (MQ=60)

                                    GCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTT                                                           >  SRR4302533.5545200/1‑94 (MQ=60)

                                    GCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTT                                                           >  SRR4302533.3280802/1‑94 (MQ=60)

                                    GCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCACTTGCAGATTCTT                                                           <  SRR4302533.3427471/94‑1 (MQ=60)

                                     CAGCTCTTTCGCGCCGGTCAGGTAGAACCCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTC                                                          <  SRR4302533.3911038/94‑1 (MQ=60)

                                     CAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTC                                                          >  SRR4302533.4103216/1‑94 (MQ=60)

                                     CAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTC                                                          <  SRR4302533.3250320/94‑1 (MQ=60)

                                      AGCTCTTTTGCGCCGGTCAAGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCG                                                         <  SRR4302533.4660749/94‑1 (MQ=60)

                                      AGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCG                                                         <  SRR4302533.4342852/94‑1 (MQ=60)

                                       GCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGC                                                        >  SRR4302533.1702346/1‑94 (MQ=60)

                                       GCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGC                                                        >  SRR4302533.4622401/1‑94 (MQ=60)

                                        CTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCG                                                       <  SRR4302533.1487325/94‑1 (MQ=60)

                                        CTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCG                                                       <  SRR4302533.407898/94‑1 (MQ=60)

                                         TCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTTAAAGTTATTCGCTTGCAGATTCTTCCCGA                                                      >  SRR4302533.1267244/1‑94 (MQ=60)

                                         TCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGA                                                      >  SRR4302533.3739525/1‑94 (MQ=60)

                                          CTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGAC                                                     >  SRR4302533.1705762/1‑94 (MQ=60)

                                           TTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACC                                                    <  SRR4302533.6046585/94‑1 (MQ=60)

                                            TTCGCGCCGGTCAGGTAGAAACCGCGCCGTGTGGCGGACTCGTCCTGATGGCCCAGCTGTGCAAAGTTATTCGCTTGCAGATTCTTCGCGACCT                                                   <  SRR4302533.1433109/94‑1 (MQ=60)

                                               GCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGTCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGT                                                <  SRR4302533.205179/94‑1 (MQ=60)

                                               GCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGT                                                <  SRR4302533.4935073/94‑1 (MQ=60)

                                                CGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTC                                               <  SRR4302533.4078287/94‑1 (MQ=60)

                                                CGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTC                                               <  SRR4302533.2148382/94‑1 (MQ=60)

                                                CGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCGGTTCAAAGTTATTCGCTTGCAGATTCTTCGtgatctggtg                                               >  SRR4302533.4477181/1‑84 (MQ=60)

                                                  CCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCAC                                             <  SRR4302533.692674/94‑1 (MQ=60)

                                                  CCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCAC                                             >  SRR4302533.5669132/1‑94 (MQ=60)

                                                   CGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACC                                            >  SRR4302533.4723175/1‑94 (MQ=60)

                                                    GGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCC                                           <  SRR4302533.675420/94‑1 (MQ=60)

                                                    GGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCC                                           >  SRR4302533.6262049/1‑94 (MQ=60)

                                                    GGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCC                                           <  SRR4302533.1568813/94‑1 (MQ=60)

                                                     GTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCG                                          <  SRR4302533.2302776/94‑1 (MQ=60)

                                                     GTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCG                                          <  SRR4302533.3496463/94‑1 (MQ=60)

                                                     GTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCG                                          <  SRR4302533.46946/94‑1 (MQ=60)

                                                     GTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCG                                          <  SRR4302533.772254/94‑1 (MQ=60)

                                                     GTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCG                                          <  SRR4302533.840770/94‑1 (MQ=60)

                                                      GCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGG                                         <  SRR4302533.5026857/94‑1 (MQ=60)

                                                       CAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGG                                        >  SRR4302533.4160812/1‑94 (MQ=60)

                                                       CAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGG                                        >  SRR4302533.4105120/1‑94 (MQ=60)

                                                        AGGTAGAACCCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGT                                       <  SRR4302533.2203544/94‑1 (MQ=60)

                                                        AGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGT                                       >  SRR4302533.1454796/1‑94 (MQ=60)

                                                        AGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGT                                       >  SRR4302533.4092365/1‑94 (MQ=60)

                                                        AGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGT                                       <  SRR4302533.2191376/94‑1 (MQ=60)

                                                         GGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTT                                      <  SRR4302533.2379602/94‑1 (MQ=60)

                                                          GTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTG                                     >  SRR4302533.1547246/1‑94 (MQ=60)

                                                          GTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTG                                     <  SRR4302533.758846/94‑1 (MQ=60)

                                                           TAGAAACCGCGCCATGTGGCGGACTCGTCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGG                                    <  SRR4302533.2773595/94‑1 (MQ=60)

                                                            AGAAACCGCGCCATGTGGCGGACTCGTCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGC                                   <  SRR4302533.3722850/94‑1 (MQ=60)

                                                            AGAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGC                                   >  SRR4302533.6120569/1‑94 (MQ=60)

                                                             GAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCG                                  <  SRR4302533.1370769/94‑1 (MQ=60)

                                                             GAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCG                                  <  SRR4302533.883254/94‑1 (MQ=60)

                                                             GAAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCG                                  <  SRR4302533.4508368/94‑1 (MQ=60)

                                                              AAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGG                                 <  SRR4302533.3041170/94‑1 (MQ=60)

                                                              AAACCGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGG                                 >  SRR4302533.3848268/1‑94 (MQ=60)

                                                                  CGCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAAT                             <  SRR4302533.5960069/94‑1 (MQ=60)

                                                                   GCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATC                            <  SRR4302533.2130459/94‑1 (MQ=60)

                                                                   GCGCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATC                            >  SRR4302533.2102902/1‑94 (MQ=60)

                                                                     GCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCAC                          >  SRR4302533.5553677/1‑94 (MQ=60)

                                                                     GCCATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCAC                          >  SRR4302533.4008486/1‑94 (MQ=60)

                                                                       CATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCT                        <  SRR4302533.3543242/94‑1 (MQ=60)

                                                                        ATGTGGCGGACTCGGCCTGATGGCCCCGCTGTTCAAAGTTATTCGCTTGCAGACTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTG                       >  SRR4302533.1948053/1‑94 (MQ=60)

                                                                        ATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTG                       <  SRR4302533.665543/94‑1 (MQ=60)

                                                                        ATGTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTG                       <  SRR4302533.420934/94‑1 (MQ=60)

                                                                          GTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTT                     >  SRR4302533.494167/1‑94 (MQ=60)

                                                                          GTGGCGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTT                     >  SRR4302533.1090988/1‑94 (MQ=60)

                                                                           GGGCGGGCTCGGCCTGATGGGCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGGCACCCGGGTTGGCGGCAATCACCTGTTT                    <  SRR4302533.2295275/94‑1 (MQ=60)

                                                                              CGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAG                 <  SRR4302533.1989013/94‑1 (MQ=60)

                                                                              CGGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAC                 >  SRR4302533.2408217/1‑94 (MQ=60)

                                                                               GGACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGC                >  SRR4302533.606428/1‑94 (MQ=60)

                                                                                GACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCA               >  SRR4302533.600915/1‑94 (MQ=60)

                                                                                 ACTCGGCCTTATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAG              <  SRR4302533.1161533/94‑1 (MQ=60)

                                                                                 ACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAG              >  SRR4302533.2627567/1‑94 (MQ=60)

                                                                                 ACTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAG              <  SRR4302533.2159367/94‑1 (MQ=60)

                                                                                  CTCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGT             <  SRR4302533.3385772/94‑1 (MQ=60)

                                                                                   TCGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTT            >  SRR4302533.20908/1‑94 (MQ=60)

                                                                                    CGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTC           >  SRR4302533.1183672/1‑94 (MQ=60)

                                                                                    CGGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTC           <  SRR4302533.3439856/94‑1 (MQ=60)

                                                                                     GGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCT          <  SRR4302533.2658767/94‑1 (MQ=60)

                                                                                     GGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCT          <  SRR4302533.4638686/94‑1 (MQ=60)

                                                                                     GGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCT          >  SRR4302533.5215299/1‑94 (MQ=60)

                                                                                     GGCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACATGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCT          <  SRR4302533.3366158/94‑1 (MQ=60)

                                                                                      GCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTG         >  SRR4302533.5905706/1‑94 (MQ=60)

                                                                                      GCCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTG         <  SRR4302533.1276992/94‑1 (MQ=60)

                                                                                       CCTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGC        >  SRR4302533.5601939/1‑94 (MQ=60)

                                                                                        CTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCC       >  SRR4302533.5243103/1‑94 (MQ=60)

                                                                                        CTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCC       >  SRR4302533.1968797/1‑94 (MQ=60)

                                                                                        CTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCC       >  SRR4302533.3874918/1‑94 (MQ=60)

                                                                                        CTGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCC       <  SRR4302533.4187060/94‑1 (MQ=60)

                                                                                         TGATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCG      >  SRR4302533.4914396/1‑94 (MQ=60)

                                                                                           ATGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCGAC    >  SRR4302533.4976078/1‑94 (MQ=60)

                                                                                            TGGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCGACC   <  SRR4302533.1488595/94‑1 (MQ=60)

                                                                                             GGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCGACCA  >  SRR4302533.2912657/1‑94 (MQ=60)

CGGTGGTGCCGTGGCTGAACTTATGCACCCCTTCGCGCAGCTCTTTCGCGCCGGTCAGGTAGAAACCGCGCCATGTGGCGGACTCGGCCTGATAGCCCAGCTGTTCAAAGTTATTCGCTTGCAGATTCTTCGCGACCTGGTCACCCGGGTTGGCGGCAATCACCTGTTTCAGCAGTTCTGCCGACCA  >  NC_000913/4302559‑4302745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`