Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,311,496 |
+C |
coding (301/408 nt) |
phnQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,311,495 | 1 | . | C | 99.6%
| 893.2
/ ‑4.0
| 276 | coding (302/408 nt) | phnQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (163/112); total (163/113) |
| Fisher's exact test for biased strand distribution p-value = 4.09e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 |
Only 100 of 303 total aligned reads displayed.
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
gAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCa < 1:5499602/93‑1 (MQ=255)
aaTGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑ccgt > 2:4255213/1‑90 (MQ=255)
aTGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑ccgtt > 2:2347299/1‑89 (MQ=255)
aTGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑ccgtt > 1:1859343/1‑89 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTcc < 1:127068/93‑1 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTcc > 2:1656013/1‑93 (MQ=255)
aTTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCg > 1:3098277/1‑93 (MQ=255)
tgtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCa < 1:6100320/93‑1 (MQ=255)
tgtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCa > 2:5819093/1‑93 (MQ=255)
gtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAg < 1:5395037/93‑1 (MQ=255)
gtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAg < 2:4449614/93‑1 (MQ=255)
tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAgg < 2:822732/93‑1 (MQ=255)
tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAgg < 2:2278744/93‑1 (MQ=255)
ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGc < 2:4302624/93‑1 (MQ=255)
ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGc > 2:2416096/1‑93 (MQ=255)
gATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGcc < 1:583071/93‑1 (MQ=255)
aTAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCg > 2:5914939/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGa > 1:294995/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGa > 2:2656799/1‑93 (MQ=255)
agagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGat > 1:1203866/1‑93 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGata > 1:2571370/1‑93 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGata > 2:1782628/1‑93 (MQ=255)
agTTTCTTTTTGAGGTTGGCTAAGGAAACGCTTTCCGCTATTTCTTTTATTCCCCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGatat < 2:2892990/93‑1 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGAtatt > 2:6002882/1‑93 (MQ=255)
tttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGAtatta < 2:2582705/93‑1 (MQ=255)
tttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGAtatta > 2:4064529/1‑93 (MQ=255)
ttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGAtattat < 2:5539551/93‑1 (MQ=255)
tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATc < 1:5079615/93‑1 (MQ=255)
ttttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcg < 2:2492388/92‑1 (MQ=255)
ttttttGAGCTTGGCTAATGAAACGATTTGCGCTATTTCTTTTATTCTCCCTGCTCACGCTGACCACCGCTACCGCCCAGGGCGATATTATcg > 2:3013212/2‑93 (MQ=255)
cTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcg > 1:880786/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcga > 2:5427349/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcga < 1:2713782/93‑1 (MQ=255)
ttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcgacga < 1:4305962/93‑1 (MQ=255)
ttGAGGTTGGCTAATGAAAAGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcgacga < 2:712013/93‑1 (MQ=255)
tGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCgacgac > 1:1100426/1‑93 (MQ=255)
ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTg > 1:319913/1‑93 (MQ=255)
ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTg < 2:4500956/93‑1 (MQ=255)
ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTg > 1:1402812/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 1:4080396/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 2:1834707/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat < 2:4363431/93‑1 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat > 1:4934602/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat > 1:3363236/1‑93 (MQ=255)
gAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAatat > 2:3977160/1‑93 (MQ=255)
aaaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAtt > 1:5292364/1‑93 (MQ=255)
aaaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAtt > 2:1564433/1‑93 (MQ=255)
aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc < 1:4159458/93‑1 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag < 1:6183796/93‑1 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag > 2:1366634/1‑93 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag > 1:1578816/1‑93 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc < 1:2170674/93‑1 (MQ=255)
cTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagca < 1:968934/93‑1 (MQ=255)
cTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagca < 2:3337129/93‑1 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag < 2:3663182/93‑1 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag > 1:928520/1‑93 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCCCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag < 2:4985199/93‑1 (MQ=255)
tCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGc < 1:354842/93‑1 (MQ=255)
ccGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCg > 2:5288355/1‑93 (MQ=255)
cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa > 2:4879340/1‑93 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt > 1:1367834/1‑93 (MQ=255)
cTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAtt < 2:1184118/93‑1 (MQ=255)
cTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAtt > 2:3937855/1‑93 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa > 1:4554373/1‑93 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa > 1:1736173/1‑93 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa > 1:6022971/1‑93 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa > 1:2680765/1‑93 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa > 2:5941981/1‑93 (MQ=255)
ttttCTTCTATTCTCCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGTCGACACCATTGGCAATATTCAGCAGGCGATTaa < 1:149299/92‑1 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 1:4118251/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 1:445332/1‑93 (MQ=255)
tttCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAt < 2:14898/93‑1 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 2:2778526/93‑1 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 2:3276768/93‑1 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 1:3986078/93‑1 (MQ=255)
ttATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt < 2:2587884/93‑1 (MQ=255)
tATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCtt > 1:5486473/1‑93 (MQ=255)
aTTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTta < 1:1016830/93‑1 (MQ=255)
tCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtata > 1:2460710/1‑93 (MQ=255)
ccccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT‑GCAATATTCAGCAGGCGATTAATGACGCTTATAAcc < 1:5555487/92‑1 (MQ=255)
cccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATaaac > 2:1252272/1‑91 (MQ=255)
cccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc > 2:4687572/1‑93 (MQ=255)
ccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAccc < 2:1988427/93‑1 (MQ=255)
ccTGCTCACGCTGTCCACCGTCCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAccc < 2:5318659/93‑1 (MQ=255)
cTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt > 2:5224453/1‑93 (MQ=255)
cTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt > 2:2955455/1‑93 (MQ=255)
gCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGa > 1:5171267/1‑93 (MQ=255)
cTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 2:2028936/93‑1 (MQ=255)
cACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCg > 1:3306787/1‑93 (MQ=255)
cACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCg > 2:2066331/1‑93 (MQ=255)
cACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCg > 2:3556289/1‑93 (MQ=255)
cACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCg > 2:624501/1‑93 (MQ=255)
aCGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACCCCATTGGCAATATTCAGCAGGCGCTTAATGACGCTTATAACCCTGACCGt > 1:2845588/1‑93 (MQ=255)
aCGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt > 1:3721150/1‑93 (MQ=255)
cGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg > 1:5791362/1‑93 (MQ=255)
gCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTgg < 1:4723920/93‑1 (MQ=255)
gCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTgg > 2:6085836/1‑93 (MQ=255)
cTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTggg > 1:1349964/1‑93 (MQ=255)
gTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCg > 1:1983098/1‑93 (MQ=255)
gTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCg > 1:787771/1‑93 (MQ=255)
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑C < SRR4302533.5532775/94‑1 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCGCGCTGTCC‑A‑CC < SRR4302533.5840805/94‑1 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CC > SRR4302533.392509/1‑94 (MQ=60)
GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑Ccg > SRR4302533.1380433/1‑92 (MQ=60)
AATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTT > SRR4302533.1870684/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTC > SRR4302533.2598588/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGATTCTTTTTGAGGCTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCAA‑CGTTC > SRR4302533.961831/1‑94 (MQ=60)
TGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCC < SRR4302533.1221434/94‑1 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCGC‑CGTTCCG < SRR4302533.3724972/94‑1 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCG < SRR4302533.127865/94‑1 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCG < SRR4302533.4867355/94‑1 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCG > SRR4302533.3117325/1‑94 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCA > SRR4302533.1729210/1‑94 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCA < SRR4302533.4296916/94‑1 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAG > SRR4302533.4491483/1‑94 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAG < SRR4302533.5851698/94‑1 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAG < SRR4302533.6137157/94‑1 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAG > SRR4302533.2667310/1‑94 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGG < SRR4302533.5427456/94‑1 (MQ=60)
TGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGC > SRR4302533.1111029/1‑94 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCC > SRR4302533.871058/1‑94 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCC < SRR4302533.1469536/94‑1 (MQ=60)
GATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCG < SRR4302533.586510/94‑1 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGA > SRR4302533.296796/1‑94 (MQ=60)
TAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAT < SRR4302533.837902/94‑1 (MQ=60)
TAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAT > SRR4302533.1211099/1‑94 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATA > SRR4302533.2587194/1‑94 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATA > SRR4302533.5511038/1‑94 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATA < SRR4302533.4217592/94‑1 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATAT < SRR4302533.4711388/94‑1 (MQ=60)
GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTA > SRR4302533.5419105/1‑94 (MQ=60)
GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTA > SRR4302533.1034132/1‑94 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTAT > SRR4302533.970715/1‑94 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCG > SRR4302533.885958/1‑94 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCG < SRR4302533.5110318/94‑1 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCG > SRR4302533.6140934/1‑94 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGA > SRR4302533.6175251/1‑94 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGA > SRR4302533.2963863/1‑94 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGAC < SRR4302533.104494/94‑1 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGAC > SRR4302533.1994080/1‑94 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGAC < SRR4302533.2730448/94‑1 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGAC < SRR4302533.2699452/94‑1 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGAC < SRR4302533.3241881/94‑1 (MQ=60)
TTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGA < SRR4302533.1502200/94‑1 (MQ=60)
TTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGAC > SRR4302533.1106951/1‑94 (MQ=60)
TTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGAC < SRR4302533.4331871/94‑1 (MQ=60)
TGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACA > SRR4302533.6255405/1‑94 (MQ=60)
TGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACA > SRR4302533.5588603/1‑94 (MQ=60)
GAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACAC > SRR4302533.3374924/1‑94 (MQ=60)
GGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCA > SRR4302533.5002841/1‑94 (MQ=60)
GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAT > SRR4302533.360237/1‑94 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT > SRR4302533.2671467/1‑94 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT < SRR4302533.1174172/94‑1 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT < SRR4302533.4119640/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG > SRR4302533.1411273/1‑94 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG > SRR4302533.321871/1‑94 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG < SRR4302533.6101484/94‑1 (MQ=60)
GGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGG < SRR4302533.4741307/94‑1 (MQ=60)
GCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGC < SRR4302533.5108396/94‑1 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCA < SRR4302533.1971269/94‑1 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCA > SRR4302533.2989145/1‑94 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCA > SRR4302533.1809352/1‑94 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCA > SRR4302533.5521246/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302533.4105237/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302533.5512036/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302533.4964481/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT < SRR4302533.1805030/94‑1 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT < SRR4302533.5177959/94‑1 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302533.3384017/1‑94 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT > SRR4302533.133867/1‑94 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT > SRR4302533.5324046/1‑94 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC > SRR4302533.1252480/1‑94 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA > SRR4302533.3337638/1‑94 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA < SRR4302533.4184665/94‑1 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA > SRR4302533.5251584/1‑94 (MQ=60)
ACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAG > SRR4302533.1588325/1‑94 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC < SRR4302533.6220923/94‑1 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA < SRR4302533.2184024/94‑1 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302533.5529951/1‑94 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302533.5538083/1‑94 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302533.933972/1‑94 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG < SRR4302533.974620/94‑1 (MQ=60)
TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG < SRR4302533.3181270/94‑1 (MQ=60)
TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG < SRR4302533.1334613/94‑1 (MQ=60)
TTCCGCTATTTGTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGC < SRR4302533.3055519/94‑1 (MQ=60)
TCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG < SRR4302533.357005/94‑1 (MQ=60)
CGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAT > SRR4302533.1376059/1‑94 (MQ=60)
CGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAT > SRR4302533.4487001/1‑94 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT < SRR4302533.418261/94‑1 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT > SRR4302533.1542531/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302533.1746708/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302533.6059470/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA < SRR4302533.1633401/94‑1 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302533.4581993/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302533.2697190/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302533.4122845/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302533.4143265/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302533.2025391/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302533.4817695/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302533.447998/1‑94 (MQ=60)
TTTTCTTCTATTCTCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGTCGACACCATTGGCAATATTCAGCAGGCGATTAAT < SRR4302533.150254/94‑1 (MQ=60)
ATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT > SRR4302533.2706516/1‑94 (MQ=60)
TTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATG > SRR4302533.6063784/1‑94 (MQ=60)
TTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATG < SRR4302533.5095493/94‑1 (MQ=60)
TTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA > SRR4302533.3525877/1‑94 (MQ=60)
TTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA > SRR4302533.2329791/1‑94 (MQ=60)
TCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC < SRR4302533.4010355/94‑1 (MQ=60)
TTTATTCGCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT < SRR4302533.3176517/94‑1 (MQ=60)
TTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT > SRR4302533.3536452/1‑94 (MQ=60)
TTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT < SRR4302533.137684/94‑1 (MQ=60)
TTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT > SRR4302533.3998064/1‑94 (MQ=60)
TTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT > SRR4302533.5519544/1‑94 (MQ=60)
TATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTA > SRR4302533.3647171/1‑94 (MQ=60)
TATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTA > SRR4302533.5780775/1‑94 (MQ=60)
ATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT < SRR4302533.1022807/94‑1 (MQ=60)
ATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT < SRR4302533.4416355/94‑1 (MQ=60)
TTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302533.1359032/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302533.2475895/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302533.6233532/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA < SRR4302533.2088938/94‑1 (MQ=60)
CCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT‑GCAATATTCAGCAGGCGATTAATGACGCTTATAACCC < SRR4302533.5589041/94‑1 (MQ=60)
ACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC > SRR4302533.5156538/1‑94 (MQ=60)
CCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302533.5379248/94‑1 (MQ=60)
CTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG > SRR4302533.5912620/1‑94 (MQ=60)
CTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG < SRR4302533.4060539/94‑1 (MQ=60)
CTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG < SRR4302533.1362974/94‑1 (MQ=60)
CTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG < SRR4302533.2572935/94‑1 (MQ=60)
CTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG < SRR4302533.2796287/94‑1 (MQ=60)
TGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGA > SRR4302533.5202474/1‑94 (MQ=60)
GCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC > SRR4302533.2772690/1‑94 (MQ=60)
GCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC > SRR4302533.4177447/1‑94 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302533.5205221/1‑94 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302533.3301686/1‑94 (MQ=60)
TCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCT > SRR4302533.5693194/1‑94 (MQ=60)
TCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG > SRR4302533.3327205/1‑94 (MQ=60)
TCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG > SRR4302533.1214301/1‑94 (MQ=60)
TCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG > SRR4302533.2310974/1‑94 (MQ=60)
CACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACCCCATTGGCAATATTCAGCAGGCGCTTAATGACGCTTATAACCCTGACCGT > SRR4302533.2863099/1‑94 (MQ=60)
CACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGT > SRR4302533.2863100/1‑94 (MQ=60)
CACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGT > SRR4302533.3743989/1‑94 (MQ=60)
ACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG > SRR4302533.5826351/1‑94 (MQ=60)
CGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG > SRR4302533.4085321/1‑94 (MQ=60)
GCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG < SRR4302533.4752563/94‑1 (MQ=60)
GCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG > SRR4302533.254733/1‑94 (MQ=60)
GCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG > SRR4302533.1358083/1‑94 (MQ=60)
CTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC > SRR4302533.5935224/1‑94 (MQ=60)
CTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC < SRR4302533.908902/94‑1 (MQ=60)
TGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > SRR4302533.1995236/1‑94 (MQ=60)
TGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > SRR4302533.1492434/1‑94 (MQ=60)
TGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > SRR4302533.792397/1‑94 (MQ=60)
C‑C‑CGTCCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT < SRR4302533.3291874/94‑1 (MQ=60)
cacCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302533.6210175/4‑94 (MQ=60)
cacCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302533.1070267/4‑94 (MQ=60)
C‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGcaccca > SRR4302533.2022262/1‑88 (MQ=60)
C‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTA > SRR4302533.2022261/1‑94 (MQ=60)
CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > SRR4302533.2080552/1‑94 (MQ=60)
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GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
