Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,370,019	G→A	D473N (GAC→AAC)	mopA →	GroEL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,370,019	0	G	A	99.6%	890.2 / NA	242	D473N (GAC→AAC)	mopA	GroEL
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (116/125); total (116/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 267 total aligned reads displayed.

GCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCGACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCT  >  NC_000913/4369929‑4370108

gCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAAc                                                                                         <  1:768515/93‑1 (MQ=255)

gCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGATGCTAACACCGTTAAAGGCGGCAAc                                                                                         <  1:1962569/93‑1 (MQ=255)

   cTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGc                                                                                      >  1:834484/1‑93 (MQ=255)

   cTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGc                                                                                      <  1:2643515/93‑1 (MQ=255)

   cTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGc                                                                                      <  2:5229686/93‑1 (MQ=255)

       gTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACt                                                                                  >  1:2139795/1‑93 (MQ=255)

        tGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTa                                                                                 >  2:3722993/1‑93 (MQ=255)

         gCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTAc                                                                                >  1:1583269/1‑93 (MQ=255)

          cAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACg                                                                               <  2:4438451/93‑1 (MQ=255)

           aaTGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACgg                                                                              >  2:2931338/1‑93 (MQ=255)

            aTGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGt                                                                             <  1:3599068/93‑1 (MQ=255)

               gAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTAc                                                                          >  1:2337852/1‑93 (MQ=255)

                aaGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACa                                                                         >  2:2639541/1‑93 (MQ=255)

                 aGCTCCGCTGCGTCAGAGCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACaa                                                                        <  2:1324399/93‑1 (MQ=255)

                  gCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAAc                                                                       <  1:3074098/93‑1 (MQ=255)

                    tCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACgc                                                                     >  1:2878894/1‑93 (MQ=255)

                      cGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACgcag                                                                   >  1:1033783/1‑93 (MQ=255)

                       gCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACgcagc                                                                  <  1:2564226/93‑1 (MQ=255)

                       gCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACgcagc                                                                  >  1:2586229/1‑93 (MQ=255)

                       gCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACgcagc                                                                  >  2:724749/1‑93 (MQ=255)

                             tCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCga                                                            >  2:3278613/1‑93 (MQ=255)

                             tCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCga                                                            >  2:2411940/1‑93 (MQ=255)

                              cAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCgaa                                                           <  2:3173815/93‑1 (MQ=255)

                                gATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGCTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCgaaga                                                         >  1:5198110/1‑93 (MQ=255)

                                 aTCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCgaagaa                                                        <  2:2809184/93‑1 (MQ=255)

                                 aTCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCgaagaa                                                        >  1:489401/1‑93 (MQ=255)

                                  tCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAAt                                                       <  2:2532528/93‑1 (MQ=255)

                                   cGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATa                                                      <  1:3466914/93‑1 (MQ=255)

                                   cGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATa                                                      <  1:3919126/93‑1 (MQ=255)

                                   cGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATa                                                      <  2:1577953/93‑1 (MQ=255)

                                    gTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATAc                                                     <  1:2708409/93‑1 (MQ=255)

                                    gTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATAc                                                     <  2:3981636/93‑1 (MQ=255)

                                    gTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATAc                                                     >  2:202615/1‑93 (MQ=255)

                                    gTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATAc                                                     <  2:5792726/93‑1 (MQ=255)

                                     tATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACg                                                    >  1:281910/1‑93 (MQ=255)

                                      aTTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACgg                                                   <  2:2173530/93‑1 (MQ=255)

                                       ttGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGc                                                  >  1:2995137/1‑93 (MQ=255)

                                       ttGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGc                                                  >  1:2318646/1‑93 (MQ=255)

                                         gAACTGCGGCGAAGAACCGTCTGTTCTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCaa                                                <  1:6086755/93‑1 (MQ=255)

                                          aaCTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAAc                                               <  1:1002210/93‑1 (MQ=255)

                                          aaCTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAAc                                               >  1:5930542/1‑93 (MQ=255)

                                             tGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATg                                            <  2:1213381/93‑1 (MQ=255)

                                              gcggcgAAGAAGCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGa                                           <  2:1004268/93‑1 (MQ=255)

                                              gcggcgAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGa                                           <  1:6271833/93‑1 (MQ=255)

                                                ggcgAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATc                                         <  2:4337198/93‑1 (MQ=255)

                                                  cgAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGa                                       <  1:5767569/93‑1 (MQ=255)

                                                  cgAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGa                                       <  2:3010074/93‑1 (MQ=255)

                                                   gaagaaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGAc                                      <  2:3027754/93‑1 (MQ=255)

                                                    aagaaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACa                                     <  2:6193317/93‑1 (MQ=255)

                                                    aagaaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACa                                     <  2:5439376/93‑1 (MQ=255)

                                                    aagaaCCGTCTGTTGTTGCTAACACCGCTAAAGGGGGCAAAGGCCACTCCGGTTACAACGCAGCAACCGAAGAATACGGCAAGCTGATCGACa                                     >  2:774219/1‑93 (MQ=255)

                                                     agaaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACAt                                    <  1:4494816/93‑1 (MQ=255)

                                                      gaaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATg                                   <  1:588404/93‑1 (MQ=255)

                                                      gaaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATg                                   <  2:5873472/93‑1 (MQ=255)

                                                       aaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATgg                                  >  1:1406794/1‑93 (MQ=255)

                                                       aaCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATgg                                  <  2:2292957/93‑1 (MQ=255)

                                                        aCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATggg                                 >  1:5277707/1‑93 (MQ=255)

                                                        aCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATggg                                 <  1:409841/93‑1 (MQ=255)

                                                         ccGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGt                                >  1:1732352/1‑93 (MQ=255)

                                                            tCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATc                             >  2:509399/1‑93 (MQ=255)

                                                            tCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATc                             >  2:3867718/1‑93 (MQ=255)

                                                              tgttgtTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCt                           >  1:5079706/1‑93 (MQ=255)

                                                              tgttgtTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCt                           >  2:2743983/1‑93 (MQ=255)

                                                               gttgttGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTg                          <  2:2489686/93‑1 (MQ=255)

                                                               gttgttGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTg                          <  1:873134/93‑1 (MQ=255)

                                                               gttgttGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTg                          <  2:4686482/93‑1 (MQ=255)

                                                                ttgttgCTAACACCGTTAAAGGCGGCAAGGGCACCTAGGGTTCAAACACAGCAACCGAAGAAAACGGCACCAGGTTCGCCATGGGAATACTgg                         >  2:3824414/1‑93 (MQ=255)

                                                                     gCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATcca                    <  1:4296662/93‑1 (MQ=255)

                                                                     gCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATcca                    <  1:5542908/93‑1 (MQ=255)

                                                                       tAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATccaac                  <  2:2053714/93‑1 (MQ=255)

                                                                       tAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATccaac                  <  2:198989/93‑1 (MQ=255)

                                                                        aaCACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATccaacc                 <  1:3765545/93‑1 (MQ=255)

                                                                         acacCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATccaacca                >  1:1656248/1‑93 (MQ=255)

                                                                           acCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCaaa              <  1:5110966/93‑1 (MQ=255)

                                                                           acCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCaaa              <  2:5559835/93‑1 (MQ=255)

                                                                           acCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCaaa              >  2:1736139/1‑93 (MQ=255)

                                                                           acCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCaaa              <  1:4730966/93‑1 (MQ=255)

                                                                           acCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCaaa              <  1:250537/93‑1 (MQ=255)

                                                                            ccGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAg             >  2:3589853/1‑93 (MQ=255)

                                                                            ccGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAg             >  1:1134951/1‑93 (MQ=255)

                                                                            ccGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATAGACATGGGTATCCTGGATCGAACCAAAg             >  1:1230135/1‑93 (MQ=255)

                                                                             cGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAga            >  1:1297975/1‑92 (MQ=255)

                                                                             cGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGt            <  2:4633897/93‑1 (MQ=255)

                                                                             cGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGt            <  2:5705899/93‑1 (MQ=255)

                                                                             cGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGt            <  1:754797/93‑1 (MQ=255)

                                                                              gTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTa           >  2:639738/1‑93 (MQ=255)

                                                                              gTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTa           <  2:6264670/93‑1 (MQ=255)

                                                                              gTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTa           >  2:2397443/1‑93 (MQ=255)

                                                                              gTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTa           >  2:4082305/1‑93 (MQ=255)

                                                                               ttAAAGGCGGCGACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTaa          <  2:1810469/93‑1 (MQ=255)

                                                                                tAAAGGCGGCAACGGCAACTGCGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAAc         <  2:3472875/93‑1 (MQ=255)

                                                                                tAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAAc         <  2:3413589/93‑1 (MQ=255)

                                                                                 aaaGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACt        <  2:4251848/93‑1 (MQ=255)

                                                                                  aaGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAGCATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTc       <  2:5902855/93‑1 (MQ=255)

                                                                                    ggcggcAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGt     >  1:3975277/1‑93 (MQ=255)

                                                                                     gcggcaACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGtt    >  2:491845/1‑93 (MQ=255)

                                                                                     gcggcaACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGtt    <  1:4861281/93‑1 (MQ=255)

                                                                                     gcggcaACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGtt    <  1:70826/93‑1 (MQ=255)

                                                                                     gcggcaACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGtt    <  1:1995480/93‑1 (MQ=255)

                                                                                     gcggcaACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGtt    >  1:4402676/1‑93 (MQ=255)

GCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCGACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCT  >  NC_000913/4369929‑4370108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTGCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCGACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCT  >  NC_000913/4369926‑4370111

GTTGCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAGCTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCA                                                                                              <  SRR4302533.4956642/94‑1 (MQ=60)

GTTGCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCA                                                                                              <  SRR4302533.2560944/94‑1 (MQ=60)

GTTGCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCA                                                                                              <  SRR4302533.583104/94‑1 (MQ=60)

  TGCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAAC                                                                                            <  SRR4302533.4521462/94‑1 (MQ=60)

  TGCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAAC                                                                                            <  SRR4302533.801639/94‑1 (MQ=60)

   GCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACG                                                                                           <  SRR4302533.773046/94‑1 (MQ=60)

   GCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACG                                                                                           >  SRR4302533.2021403/1‑94 (MQ=60)

   GCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACG                                                                                           <  SRR4302533.851145/94‑1 (MQ=60)

   GCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGATGCTAACACCGTTAAAGGCGGCAACG                                                                                           <  SRR4302533.1974548/94‑1 (MQ=60)

    CACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATGGAACTGCGGCGAAGACCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGG                                                                                          <  SRR4302533.2171624/94‑1 (MQ=60)

     ACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGC                                                                                         >  SRR4302533.839375/1‑94 (MQ=60)

     ACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGC                                                                                         <  SRR4302533.5673147/94‑1 (MQ=60)

      CTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCA                                                                                        >  SRR4302533.4856197/1‑94 (MQ=60)

      CTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCA                                                                                        <  SRR4302533.2659759/94‑1 (MQ=60)

        GCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAAGTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAAC                                                                                      <  SRR4302533.1240573/94‑1 (MQ=60)

         CGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACT                                                                                     >  SRR4302533.2152985/1‑94 (MQ=60)

         CGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACT                                                                                     <  SRR4302533.1871207/94‑1 (MQ=60)

          GTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTA                                                                                    >  SRR4302533.5965124/1‑94 (MQ=60)

           TGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTAC                                                                                   >  SRR4302533.1592812/1‑94 (MQ=60)

            GCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACG                                                                                  <  SRR4302533.6185345/94‑1 (MQ=60)

               ATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGGAACTACGGTT                                                                               >  SRR4302533.5006567/1‑94 (MQ=60)

               ATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTT                                                                               >  SRR4302533.3088460/1‑94 (MQ=60)

               ATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTT                                                                               <  SRR4302533.3621208/94‑1 (MQ=60)

                 GGAAGCTCCGCTGCGTCAGATCGTATTGACCTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCACCTACGGTTAC                                                                             >  SRR4302533.1976119/1‑94 (MQ=60)

                 GGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTAC                                                                             >  SRR4302533.2352321/1‑94 (MQ=60)

                 GGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTAC                                                                             >  SRR4302533.2566803/1‑94 (MQ=60)

                    AGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAAC                                                                          <  SRR4302533.1085183/94‑1 (MQ=60)

                    AGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAAC                                                                          >  SRR4302533.5539771/1‑94 (MQ=60)

                     GCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACG                                                                         <  SRR4302533.3092968/94‑1 (MQ=60)

                      CTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGC                                                                        >  SRR4302533.2433800/1‑94 (MQ=60)

                      CTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGC                                                                        >  SRR4302533.4739751/1‑94 (MQ=60)

                      CTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGC                                                                        >  SRR4302533.2896605/1‑94 (MQ=60)

                      CTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGGTAAAGGCGGGCACGGCAACTACGGTCACAACGC                                                                        >  SRR4302533.4739921/1‑94 (MQ=60)

                        CCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAG                                                                      <  SRR4302533.4769173/94‑1 (MQ=60)

                        CCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAG                                                                      >  SRR4302533.1039864/1‑94 (MQ=60)

                         CGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGC                                                                     >  SRR4302533.2602129/1‑94 (MQ=60)

                         CGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGA                                                                     >  SRR4302533.5975261/1‑94 (MQ=60)

                          GCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTATCACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCA                                                                    <  SRR4302533.3404297/94‑1 (MQ=60)

                          GCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCA                                                                    <  SRR4302533.2580007/94‑1 (MQ=60)

                          GCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCA                                                                    <  SRR4302533.886341/94‑1 (MQ=60)

                            TGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCNNCTACGGTTACAACGNAGCNAC                                                                  >  SRR4302533.2564093/1‑94 (MQ=60)

                               GTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGA                                                               >  SRR4302533.1316887/1‑94 (MQ=60)

                               GTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGA                                                               >  SRR4302533.76352/1‑94 (MQ=60)

                               GTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGA                                                               >  SRR4302533.2624962/1‑94 (MQ=60)

                               GTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGA                                                               >  SRR4302533.5110653/1‑94 (MQ=60)

                                 CAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAG                                                             <  SRR4302533.5472523/94‑1 (MQ=60)

                                  AGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGCTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGA                                                            >  SRR4302533.5229457/1‑94 (MQ=60)

                                   GATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAA                                                           <  SRR4302533.4330880/94‑1 (MQ=60)

                                   GATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAA                                                           >  SRR4302533.492329/1‑94 (MQ=60)

                                   GATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAA                                                           <  SRR4302533.2720912/94‑1 (MQ=60)

                                    ATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAAT                                                          >  SRR4302533.1021531/1‑94 (MQ=60)

                                     TCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATA                                                         <  SRR4302533.1323865/94‑1 (MQ=60)

                                     TCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATA                                                         <  SRR4302533.3540088/94‑1 (MQ=60)

                                     TCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATA                                                         <  SRR4302533.5138366/94‑1 (MQ=60)

                                      CGTATTGAGCTGCGGCGAAGAGCCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATAC                                                        <  SRR4302533.3992544/94‑1 (MQ=60)

                                      CGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATAC                                                        <  SRR4302533.3488310/94‑1 (MQ=60)

                                      CGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATAC                                                        <  SRR4302533.3943059/94‑1 (MQ=60)

                                       GTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACG                                                       >  SRR4302533.283635/1‑94 (MQ=60)

                                       GTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACG                                                       <  SRR4302533.2725028/94‑1 (MQ=60)

                                         ATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGC                                                     >  SRR4302533.3013455/1‑94 (MQ=60)

                                         ATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGC                                                     >  SRR4302533.2333001/1‑94 (MQ=60)

                                         ATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGC                                                     <  SRR4302533.4342873/94‑1 (MQ=60)

                                           TGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAA                                                   >  SRR4302533.4682535/1‑94 (MQ=60)

                                           TGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAA                                                   >  SRR4302533.5048403/1‑94 (MQ=60)

                                            GAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAAC                                                  >  SRR4302533.5966394/1‑94 (MQ=60)

                                            GAACTGCGGCGAAGAACCGTCTGTTCTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAAC                                                  <  SRR4302533.6123553/94‑1 (MQ=60)

                                             AACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACA                                                 <  SRR4302533.1008061/94‑1 (MQ=60)

                                                TGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGA                                              >  SRR4302533.4297042/1‑94 (MQ=60)

                                                 GCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGAT                                             <  SRR4302533.5863751/94‑1 (MQ=60)

                                                 GCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGAT                                             <  SRR4302533.6309296/94‑1 (MQ=60)

                                                  CGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATG                                            >  SRR4302533.1423015/1‑94 (MQ=60)

                                                  CGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATC                                            <  SRR4302533.2893019/94‑1 (MQ=60)

                                                  CGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATC                                            <  SRR4302533.2893017/94‑1 (MQ=60)

                                                   GGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCG                                           <  SRR4302533.3880186/94‑1 (MQ=60)

                                                   GGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCG                                           <  SRR4302533.1890705/94‑1 (MQ=60)

                                                    GCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGA                                          >  SRR4302533.37249/1‑94 (MQ=60)

                                                    GCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGA                                          >  SRR4302533.1136265/1‑94 (MQ=60)

                                                     CGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGAC                                         <  SRR4302533.5890494/94‑1 (MQ=60)

                                                     CGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGAC                                         <  SRR4302533.5802386/94‑1 (MQ=60)

                                                     CGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACAAGATCGAA                                         >  SRR4302533.681569/1‑94 (MQ=60)

                                                       AAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACAT                                       >  SRR4302533.2362713/1‑94 (MQ=60)

                                                       AAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACAT                                       <  SRR4302533.3002938/94‑1 (MQ=60)

                                                        AGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATG                                      <  SRR4302533.4522035/94‑1 (MQ=60)

                                                         GAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGG                                     <  SRR4302533.3922233/94‑1 (MQ=60)

                                                         GAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGG                                     <  SRR4302533.591877/94‑1 (MQ=60)

                                                         GAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGG                                     >  SRR4302533.6269070/1‑94 (MQ=60)

                                                         GAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGG                                     >  SRR4302533.1415303/1‑94 (MQ=60)

                                                          AACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGG                                    >  SRR4302533.5309342/1‑94 (MQ=60)

                                                          AACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGG                                    >  SRR4302533.798826/1‑94 (MQ=60)

                                                           ACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGT                                   <  SRR4302533.412298/94‑1 (MQ=60)

                                                           ACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGT                                   >  SRR4302533.1742854/1‑94 (MQ=60)

                                                            CCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTA                                  >  SRR4302533.1467776/1‑94 (MQ=60)

                                                             CGTCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTAT                                 <  SRR4302533.2713887/94‑1 (MQ=60)

                                                               TCTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCC                               <  SRR4302533.4109859/94‑1 (MQ=60)

                                                                CTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCT                              >  SRR4302533.5920255/1‑94 (MQ=60)

                                                                CTGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCT                              >  SRR4302533.5110411/1‑94 (MQ=60)

                                                                 TGTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTG                             <  SRR4302533.1685246/94‑1 (MQ=60)

                                                                  GTTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGG                            <  SRR4302533.878262/94‑1 (MQ=60)

                                                                   TTGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGA                           >  SRR4302533.5307155/1‑94 (MQ=60)

                                                                    TGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGAT                          >  SRR4302533.823399/1‑94 (MQ=60)

                                                                    TGTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGAT                          >  SRR4302533.396114/1‑94 (MQ=60)

                                                                     GTTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATC                         >  SRR4302533.2800560/1‑94 (MQ=60)

                                                                      TTGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCC                        >  SRR4302533.2601789/1‑94 (MQ=60)

                                                                       TGCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCA                       <  SRR4302533.932653/94‑1 (MQ=60)

                                                                        GCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAA                      >  SRR4302533.2332674/1‑94 (MQ=60)

                                                                        GCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAA                      <  SRR4302533.4322502/94‑1 (MQ=60)

                                                                        GCTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAA                      <  SRR4302533.5576383/94‑1 (MQ=60)

                                                                         CTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCACCATGATCGACATGGGTACCCTGGATCCAAC                     >  SRR4302533.1229875/1‑94 (MQ=60)

                                                                         CTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAAC                     >  SRR4302533.5145528/1‑94 (MQ=60)

                                                                         CTAACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAAC                     >  SRR4302533.4488486/1‑94 (MQ=60)

                                                                           AACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCA                   <  SRR4302533.2072136/94‑1 (MQ=60)

                                                                           AACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCA                   >  SRR4302533.1666271/1‑94 (MQ=60)

                                                                           AACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCA                   >  SRR4302533.2640560/1‑94 (MQ=60)

                                                                           AACACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCA                   <  SRR4302533.3788629/94‑1 (MQ=60)

                                                                              ACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAG                <  SRR4302533.252083/94‑1 (MQ=60)

                                                                              ACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAG                <  SRR4302533.4759648/94‑1 (MQ=60)

                                                                              ACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAG                <  SRR4302533.5141856/94‑1 (MQ=60)

                                                                              ACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAG                <  SRR4302533.169993/94‑1 (MQ=60)

                                                                              ACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAG                >  SRR4302533.1141700/1‑94 (MQ=60)

                                                                              ACCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATAGACATGGGTATCCTGGATCGAACCAAAG                >  SRR4302533.1237498/1‑94 (MQ=60)

                                                                               CCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGT               >  SRR4302533.4894150/1‑94 (MQ=60)

                                                                               CCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGT               <  SRR4302533.1627787/94‑1 (MQ=60)

                                                                               CCGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGA               >  SRR4302533.1305788/1‑94 (MQ=60)

                                                                                CGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTA              <  SRR4302533.759238/94‑1 (MQ=60)

                                                                                CGTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTA              >  SRR4302533.3109293/1‑94 (MQ=60)

                                                                                 GTTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAA             >  SRR4302533.762060/1‑94 (MQ=60)

                                                                                  TTAAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAAC            >  SRR4302533.678937/1‑94 (MQ=60)

                                                                                    AAAGGCGGCAACGGCAACTACGGTTACAACGCAGCACCCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTC          <  SRR4302533.1217032/94‑1 (MQ=60)

                                                                                    AAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTC          >  SRR4302533.3593073/1‑94 (MQ=60)

                                                                                    AAAGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTC          <  SRR4302533.527704/94‑1 (MQ=60)

                                                                                      AGGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGT        >  SRR4302533.3999478/1‑94 (MQ=60)

                                                                                       GGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTT       >  SRR4302533.4429257/1‑94 (MQ=60)

                                                                                       GGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTT       <  SRR4302533.2336218/94‑1 (MQ=60)

                                                                                       GGCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTT       <  SRR4302533.2937184/94‑1 (MQ=60)

                                                                                        GCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTC      <  SRR4302533.71284/94‑1 (MQ=60)

                                                                                        GCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTC      <  SRR4302533.2007731/94‑1 (MQ=60)

                                                                                        GCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTC      <  SRR4302533.4890744/94‑1 (MQ=60)

                                                                                        GCGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTC      <  SRR4302533.4321526/94‑1 (MQ=60)

                                                                                         CGGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCT     >  SRR4302533.737462/1‑94 (MQ=60)

                                                                                          GGCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTG    >  SRR4302533.5640763/1‑94 (MQ=60)

                                                                                           GCAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGC   <  SRR4302533.235068/94‑1 (MQ=60)

                                                                                            CAACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCT  <  SRR4302533.1894484/94‑1 (MQ=60)

GTTGCACTGCGTGCAATGGAAGCTCCGCTGCGTCAGATCGTATTGAACTGCGGCGAAGAACCGTCTGTTGTTGCTAACACCGTTAAAGGCGGCGACGGCAACTACGGTTACAACGCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCT  >  NC_000913/4369926‑4370111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`