Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,370,182	A→G	N527S (AAC→AGC)	mopA →	GroEL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,370,182	0	A	G	100.0%	728.0 / NA	225	N527S (AAC→AGC)	mopA	GroEL
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (95/130); total (95/130)

Only 100 of 236 total aligned reads displayed.

CCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT  >  NC_000913/4370092‑4370271

ccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCg                                                                                         >  1:5461086/1‑93 (MQ=255)

ccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCg                                                                                         >  1:4598973/1‑93 (MQ=255)

 caaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGa                                                                                        >  2:2649538/1‑93 (MQ=255)

 caaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGa                                                                                        >  2:5285098/1‑93 (MQ=255)

 caaAGTAACTCGTTCTCCTCTGCAGTACGCAGCTTCTGTAGCTGGCCTGACGATCTCCACCGAAGGCATGGTTACCGACCTGCCGAAAAGCGa                                                                                        <  2:1693977/93‑1 (MQ=255)

   aaGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATg                                                                                      <  2:2810686/93‑1 (MQ=255)

   aaGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATg                                                                                      >  2:1969670/1‑93 (MQ=255)

    aGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGc                                                                                     <  1:5794418/93‑1 (MQ=255)

    aGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGc                                                                                     <  1:5253565/93‑1 (MQ=255)

     gTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCa                                                                                    <  1:5559620/93‑1 (MQ=255)

     gTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCa                                                                                    >  1:3161156/1‑93 (MQ=255)

      tAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATGACCACCGAATGCATGGTTACCCACCTGCCGAAAAGCGATGCAg                                                                                   >  1:5188407/1‑93 (MQ=255)

      tAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAg                                                                                   <  1:1766511/93‑1 (MQ=255)

      tAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAg                                                                                   >  2:6018181/1‑93 (MQ=255)

         cTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTg                                                                                >  2:5040564/1‑93 (MQ=255)

          tCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGa                                                                               >  2:5405583/1‑93 (MQ=255)

            gTTCTGCTCTGCAGTACGCTGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACt                                                                             >  2:6137945/1‑93 (MQ=255)

             ttCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACtt                                                                            <  1:2117184/93‑1 (MQ=255)

              tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           <  1:3034592/93‑1 (MQ=255)

              tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           <  2:1129553/93‑1 (MQ=255)

              tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           <  2:6080414/93‑1 (MQ=255)

              tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           <  2:2539970/93‑1 (MQ=255)

              tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATAAACACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           >  2:472809/1‑93 (MQ=255)

                tgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAgg                                                                         <  1:2625770/93‑1 (MQ=255)

                 cctctgcAGTCCGCAGCTTCTGTGGCTGGCCTGATGATCCCCACCGAATGCATGGTGACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGgc                                                                        <  2:5506541/92‑1 (MQ=255)

                  ctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGgcg                                                                       <  1:2826759/93‑1 (MQ=255)

                   tctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGCAAAGCGATGCCGCTGACTTAGgcgc                                                                      >  2:4442503/1‑93 (MQ=255)

                   tctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGgcgc                                                                      >  1:4973178/1‑93 (MQ=255)

                    ctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgct                                                                     <  1:5320049/93‑1 (MQ=255)

                    ctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgct                                                                     <  1:3722993/93‑1 (MQ=255)

                     tgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGCCCTGCCGAACAGCGATGCAGCTGACTTAGACgctg                                                                    >  1:4252194/1‑93 (MQ=255)

                     tgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgctg                                                                    >  1:827921/1‑93 (MQ=255)

                       cAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgctgct                                                                  >  2:3539962/1‑93 (MQ=255)

                       cAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgctgct                                                                  <  2:2878894/93‑1 (MQ=255)

                       cAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgctgct                                                                  <  2:5991958/93‑1 (MQ=255)

                            cGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCgg                                                             <  2:377368/93‑1 (MQ=255)

                              cAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTa                                                           <  1:3573438/93‑1 (MQ=255)

                               aGCTTCTGTGGCTGGCCTGATGATCACCCCCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAt                                                          <  1:1384515/93‑1 (MQ=255)

                               aGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAt                                                          <  2:5253091/93‑1 (MQ=255)

                               aGCTTCTGTGGCTGCCCTGATGATCCCCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAt                                                          <  2:3379217/93‑1 (MQ=255)

                                 cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                        <  2:4271335/93‑1 (MQ=255)

                                 cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                        <  2:674949/93‑1 (MQ=255)

                                 cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                        <  1:3411819/93‑1 (MQ=255)

                                   tCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggc                                                      >  1:5814269/1‑93 (MQ=255)

                                     tgtgGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcgg                                                    >  1:1463343/1‑93 (MQ=255)

                                     tgtgGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGGATGggcgg                                                    >  2:126354/1‑93 (MQ=255)

                                        ggctggcCTGATGATCACCACCGAATGCATGGTTACCGCCCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCAt                                                 <  1:2968740/93‑1 (MQ=255)

                                         gctggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATg                                                <  2:5648993/93‑1 (MQ=255)

                                           tggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATggg                                              >  1:1694061/1‑93 (MQ=255)

                                            ggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGt                                             <  2:2716858/93‑1 (MQ=255)

                                             gcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                            <  2:3571067/93‑1 (MQ=255)

                                             gcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                            <  1:1543387/93‑1 (MQ=255)

                                               cTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGc                                          >  2:5467213/1‑93 (MQ=255)

                                                tgatgaTCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCa                                         <  2:2337852/93‑1 (MQ=255)

                                                 tatgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAt                                        <  2:482500/92‑1 (MQ=255)

                                                 gatgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAt                                        <  2:5275525/93‑1 (MQ=255)

                                                 gatgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAt                                        >  2:238820/1‑93 (MQ=255)

                                                 gatgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAt                                        >  1:2955432/1‑93 (MQ=255)

                                                   tgatCACCACCGAATGCATGGTTACTGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATgg                                      >  1:4080180/1‑93 (MQ=255)

                                                   tgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATgg                                      <  2:753123/93‑1 (MQ=255)

                                                    gatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATggg                                     <  1:6215752/93‑1 (MQ=255)

                                                    gatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATggg                                     >  2:2173529/1‑93 (MQ=255)

                                                      tCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcg                                   >  2:1122564/1‑93 (MQ=255)

                                                      tCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcg                                   <  1:509399/93‑1 (MQ=255)

                                                         ccaccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                <  2:4935776/93‑1 (MQ=255)

                                                           accGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatg                              >  2:810819/1‑93 (MQ=255)

                                                           accGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatg                              <  1:5350419/93‑1 (MQ=255)

                                                           accGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatg                              <  2:1445921/93‑1 (MQ=255)

                                                            ccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatga                             <  1:1962705/93‑1 (MQ=255)

                                                              gAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatgatg                           <  2:2585478/93‑1 (MQ=255)

                                                               aaTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGt                          <  2:2783462/93‑1 (MQ=255)

                                                               aaTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGt                          >  1:6240460/1‑93 (MQ=255)

                                                                aTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTa                         <  1:5395729/93‑1 (MQ=255)

                                                                aTGCATGGTTACCGACCTGCCG‑AAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                        <  2:5079706/93‑1 (MQ=255)

                                                                 tGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                        >  2:1287714/1‑93 (MQ=255)

                                                                 tGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                        <  2:4654332/93‑1 (MQ=255)

                                                                  gCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAt                       >  1:2317389/1‑93 (MQ=255)

                                                                  gCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAt                       <  2:5884693/93‑1 (MQ=255)

                                                                   cATGGTTCCTGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGTGTGGCATGGGCGGCATGATGTAAtt                      <  2:6269703/93‑1 (MQ=255)

                                                                   cATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAtt                      <  1:779077/93‑1 (MQ=255)

                                                                   cATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAtt                      <  1:724749/93‑1 (MQ=255)

                                                                    aTGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTg                     >  1:1003612/1‑93 (MQ=255)

                                                                    aTGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTg                     <  2:2318322/93‑1 (MQ=255)

                                                                     tGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGc                    <  1:1999228/93‑1 (MQ=255)

                                                                      ggTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGcc                   >  2:1764645/1‑93 (MQ=255)

                                                                        ttACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCt                 >  1:4860819/1‑93 (MQ=255)

                                                                         tACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTg                >  1:3535081/1‑93 (MQ=255)

                                                                            cGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCAc             <  2:37004/93‑1 (MQ=255)

                                                                            cGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGCCGGCATGATGTAATTGCCCTGCAc             >  2:3007647/1‑93 (MQ=255)

                                                                             gACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCAcc            >  1:251812/1‑93 (MQ=255)

                                                                              aCCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCt           <  2:5114618/93‑1 (MQ=255)

                                                                              aCCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCt           >  1:5525997/1‑93 (MQ=255)

                                                                              aCCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCt           >  1:6177689/1‑93 (MQ=255)

                                                                               ccTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTc          <  1:6139911/93‑1 (MQ=255)

                                                                               ccTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTc          >  2:2404568/1‑93 (MQ=255)

                                                                                cTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCg         >  1:6044588/1‑93 (MQ=255)

                                                                                cTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCg         >  1:1442837/1‑93 (MQ=255)

                                                                                 tGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGc        >  1:974392/1‑93 (MQ=255)

                                                                                 tGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGc        <  2:2963861/93‑1 (MQ=255)

                                                                                       aaagCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAt  <  1:1203580/93‑1 (MQ=255)

CCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT  >  NC_000913/4370092‑4370271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAA  >  NC_000913/4370089‑4370273

ccaccaaagttactcgttctgctcttcaggtcgccagtttctgtgcttggctggaGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             <  SRR4302533.1642641/39‑1 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             >  SRR4302533.1158339/1‑94 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             >  SRR4302533.1214955/1‑94 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             <  SRR4302533.2349156/94‑1 (MQ=60)

 AACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGC                                                                                            >  SRR4302533.6253666/1‑94 (MQ=60)

  ACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGGTCACCACCGAATGCATGGTTACCGACCTGCCGTAAAGCG                                                                                           >  SRR4302533.5473234/1‑94 (MQ=60)

  ACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCG                                                                                           >  SRR4302533.4626835/1‑94 (MQ=60)

  ACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCG                                                                                           >  SRR4302533.5493987/1‑94 (MQ=60)

   CCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGA                                                                                          >  SRR4302533.840171/1‑94 (MQ=60)

    CAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGAT                                                                                         >  SRR4302533.5616625/1‑94 (MQ=60)

     AAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATG                                                                                        <  SRR4302533.2973852/94‑1 (MQ=60)

       AGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCA                                                                                      <  SRR4302533.5285128/94‑1 (MQ=60)

       AGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCA                                                                                      <  SRR4302533.5829424/94‑1 (MQ=60)

       AGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCA                                                                                      >  SRR4302533.775039/1‑94 (MQ=60)

       AGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCA                                                                                      >  SRR4302533.3180608/1‑94 (MQ=60)

        GTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATGACCACCGAATGCATGGTTACCCACCTGCCGAAAAGCGATGCAG                                                                                     >  SRR4302533.5219719/1‑94 (MQ=60)

        GTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAG                                                                                     <  SRR4302533.5593222/94‑1 (MQ=60)

         TAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGC                                                                                    <  SRR4302533.1777265/94‑1 (MQ=60)

          AACGCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCT                                                                                   <  SRR4302533.2949266/94‑1 (MQ=60)

                TTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGGAGCTGACTTG                                                                             >  SRR4302533.1662489/1‑94 (MQ=60)

                TTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTA                                                                             <  SRR4302533.2130242/94‑1 (MQ=60)

                 TCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAG                                                                            <  SRR4302533.4480655/94‑1 (MQ=60)

                 TCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAG                                                                            <  SRR4302533.3053161/94‑1 (MQ=60)

                  CTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGG                                                                           <  SRR4302533.668277/94‑1 (MQ=60)

                  CTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGG                                                                           <  SRR4302533.7583/94‑1 (MQ=60)

                   TGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGC                                                                          <  SRR4302533.2641882/94‑1 (MQ=60)

                   TGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGC                                                                          <  SRR4302533.3488873/94‑1 (MQ=60)

                     CTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGC                                                                        <  SRR4302533.2844151/94‑1 (MQ=60)

                     CTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGC                                                                        >  SRR4302533.5003333/1‑94 (MQ=60)

                      TCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCT                                                                       >  SRR4302533.1321898/1‑94 (MQ=60)

                       CTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGCCCTGCCGAACAGCGATGCAGCTGACTTAGACGCTG                                                                      >  SRR4302533.4277842/1‑94 (MQ=60)

                       CTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTG                                                                      <  SRR4302533.5351935/94‑1 (MQ=60)

                       CTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTG                                                                      <  SRR4302533.3745837/94‑1 (MQ=60)

                       CTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTG                                                                      >  SRR4302533.832777/1‑94 (MQ=60)

                        TGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGC                                                                     <  SRR4302533.494785/94‑1 (MQ=60)

                          CAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTG                                                                   <  SRR4302533.1993115/94‑1 (MQ=60)

                          CAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTG                                                                   >  SRR4302533.3076723/1‑94 (MQ=60)

                           AGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACCTACGCGCTGCTGG                                                                  >  SRR4302533.2424959/1‑94 (MQ=60)

                             TACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCG                                                                >  SRR4302533.3371159/1‑94 (MQ=60)

                               CGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGT                                                              <  SRR4302533.5525844/94‑1 (MQ=60)

                               CGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGT                                                              <  SRR4302533.1407336/94‑1 (MQ=60)

                                 CAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAT                                                            <  SRR4302533.3595455/94‑1 (MQ=60)

                                 CAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAT                                                            <  SRR4302533.2655765/94‑1 (MQ=60)

                                 CAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAT                                                            >  SRR4302533.536728/1‑94 (MQ=60)

                                 CAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAT                                                            <  SRR4302533.5564540/94‑1 (MQ=60)

                                  AGCTTCTGTGGCTGGCCTGATGATCACCCCCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATG                                                           <  SRR4302533.1392845/94‑1 (MQ=60)

                                  AGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATG                                                           <  SRR4302533.3446463/94‑1 (MQ=60)

                                    CTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGG                                                         >  SRR4302533.4785516/1‑94 (MQ=60)

                                    CTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGG                                                         <  SRR4302533.3432892/94‑1 (MQ=60)

                                    CTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGG                                                         >  SRR4302533.6093423/1‑94 (MQ=60)

                                     TTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGC                                                        >  SRR4302533.5849384/1‑94 (MQ=60)

                                     TTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGC                                                        <  SRR4302533.6043448/94‑1 (MQ=60)

                                      TCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCG                                                       >  SRR4302533.1983844/1‑94 (MQ=60)

                                       CTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGG                                                      >  SRR4302533.1472163/1‑94 (MQ=60)

                                          TGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCAT                                                   <  SRR4302533.5740155/94‑1 (MQ=60)

                                          TGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCAT                                                   <  SRR4302533.1799842/94‑1 (MQ=60)

                                          TGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCAT                                                   <  SRR4302533.1468017/94‑1 (MQ=60)

                                          GGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCAT                                                   <  SRR4302533.789066/94‑1 (MQ=60)

                                           GGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGCCCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATG                                                  <  SRR4302533.2986892/94‑1 (MQ=60)

                                           GGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATG                                                  <  SRR4302533.5390620/94‑1 (MQ=60)

                                            GCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGG                                                 <  SRR4302533.6221322/94‑1 (MQ=60)

                                             CTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGG                                                >  SRR4302533.1704323/1‑94 (MQ=60)

                                               GGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTG                                              <  SRR4302533.384971/94‑1 (MQ=60)

                                                GCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGG                                             >  SRR4302533.5320699/1‑94 (MQ=60)

                                                GCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGG                                             <  SRR4302533.1552682/94‑1 (MQ=60)

                                                 CCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGC                                            >  SRR4302533.2021283/1‑94 (MQ=60)

                                                  CTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCA                                           <  SRR4302533.2513382/94‑1 (MQ=60)

                                                  CTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCA                                           <  SRR4302533.2748861/94‑1 (MQ=60)

                                                   TGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAT                                          >  SRR4302533.5856009/1‑94 (MQ=60)

                                                   TGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAT                                          >  SRR4302533.2973503/1‑94 (MQ=60)

                                                   TGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAT                                          >  SRR4302533.6206786/1‑94 (MQ=60)

                                                     ATGATCACCACCGAATGCATGGTTACTGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGG                                        >  SRR4302533.4105018/1‑94 (MQ=60)

                                                     ATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGG                                        <  SRR4302533.5294051/94‑1 (MQ=60)

                                                       GATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGG                                      >  SRR4302533.5123538/1‑94 (MQ=60)

                                                       GATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGC                                      <  SRR4302533.6253023/94‑1 (MQ=60)

                                                       GATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGC                                      <  SRR4302533.1746674/94‑1 (MQ=60)

                                                        ATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCG                                     <  SRR4302533.3029051/94‑1 (MQ=60)

                                                         TCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGG                                    <  SRR4302533.3847797/94‑1 (MQ=60)

                                                         TCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGG                                    <  SRR4302533.512425/94‑1 (MQ=60)

                                                          CACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGC                                   >  SRR4302533.224247/1‑94 (MQ=60)

                                                           ACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCA                                  >  SRR4302533.2622206/1‑94 (MQ=60)

                                                            CCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCAT                                 >  SRR4302533.5010156/1‑94 (MQ=60)

                                                             CACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATG                                <  SRR4302533.5460560/94‑1 (MQ=60)

                                                              ACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGA                               <  SRR4302533.5382523/94‑1 (MQ=60)

                                                               CCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGAT                              >  SRR4302533.5229507/1‑94 (MQ=60)

                                                               CCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGAT                              <  SRR4302533.1974684/94‑1 (MQ=60)

                                                                 GAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGT                            >  SRR4302533.6277825/1‑94 (MQ=60)

                                                                   ATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAA                          <  SRR4302533.5428151/94‑1 (MQ=60)

                                                                    TGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAT                         >  SRR4302533.2331736/1‑94 (MQ=60)

                                                                     GCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATT                        <  SRR4302533.1540405/94‑1 (MQ=60)

                                                                      CATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTG                       <  SRR4302533.729036/94‑1 (MQ=60)

                                                                      CATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTG                       <  SRR4302533.783664/94‑1 (MQ=60)

                                                                      CATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTG                       >  SRR4302533.1009479/1‑94 (MQ=60)

                                                                       ATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGC                      >  SRR4302533.1556556/1‑94 (MQ=60)

                                                                       ATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGC                      >  SRR4302533.2997847/1‑94 (MQ=60)

                                                                        TGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCC                     <  SRR4302533.2011531/94‑1 (MQ=60)

                                                                          GTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCT                   <  SRR4302533.6263992/94‑1 (MQ=60)

                                                                          GTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCT                   <  SRR4302533.3611953/94‑1 (MQ=60)

                                                                          GTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCT                   >  SRR4302533.4890280/1‑94 (MQ=60)

                                                                           TTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTG                  >  SRR4302533.1397857/1‑94 (MQ=60)

                                                                           TTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTG                  >  SRR4302533.3556865/1‑94 (MQ=60)

                                                                              CCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCAC               >  SRR4302533.5160613/1‑94 (MQ=60)

                                                                               CGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACC              >  SRR4302533.437825/1‑94 (MQ=60)

                                                                               CGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACC              >  SRR4302533.253362/1‑94 (MQ=60)

                                                                               CGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGCATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACC              >  SRR4302533.3568088/1‑94 (MQ=60)

                                                                                GACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCT             >  SRR4302533.6214800/1‑94 (MQ=60)

                                                                                GACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCT             >  SRR4302533.5559355/1‑94 (MQ=60)

                                                                                 ACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATAGGTGGCATGGGCGGCATGATGTAATTGCCCTGCAGCTC            <  SRR4302533.1175086/94‑1 (MQ=60)

                                                                                  CCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCG           >  SRR4302533.1451541/1‑94 (MQ=60)

                                                                                  CCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCG           >  SRR4302533.6240964/1‑94 (MQ=60)

                                                                                  CCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCG           <  SRR4302533.6176891/94‑1 (MQ=60)

                                                                                  CCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCG           >  SRR4302533.6081206/1‑94 (MQ=60)

                                                                                  CCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCG           >  SRR4302533.417850/1‑94 (MQ=60)

                                                                                   CTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGC          >  SRR4302533.980112/1‑94 (MQ=60)

                                                                                      CCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGA       >  SRR4302533.5846474/1‑94 (MQ=60)

                                                                                         AAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT    <  SRR4302533.2426838/94‑1 (MQ=60)

                                                                                          AAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATA   >  SRR4302533.6100010/1‑94 (MQ=60)

                                                                                          AAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATA   <  SRR4302533.1210812/94‑1 (MQ=60)

                                                                                           AAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAA  <  SRR4302533.3298856/94‑1 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAA  >  NC_000913/4370089‑4370273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`