Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,381,510	T→C	Y46H (TAC→CAC)	yjeM →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,381,510	0	T	C	100.0%	995.9 / NA	302	Y46H (TAC→CAC)	yjeM	putative transport
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/179); total (123/179)

Only 100 of 316 total aligned reads displayed.

CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  >  NC_000913/4381420‑4381602

 cTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACt                                                                                           >  2:1505377/1‑93 (MQ=255)

 cTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACt                                                                                           >  2:2253257/1‑93 (MQ=255)

  tCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACtt                                                                                          <  2:5136800/93‑1 (MQ=255)

  tCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACtt                                                                                          <  2:4952331/93‑1 (MQ=255)

  tCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACtt                                                                                          <  2:4684173/93‑1 (MQ=255)

   cacaCGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTa                                                                                         >  1:1649378/1‑93 (MQ=255)

    acacGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTaa                                                                                        <  1:5410458/93‑1 (MQ=255)

    acacGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTaa                                                                                        <  2:1289715/93‑1 (MQ=255)

         aTAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGt                                                                                   >  1:4963721/1‑93 (MQ=255)

         aTAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGt                                                                                   <  2:1562173/93‑1 (MQ=255)

          tAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGtt                                                                                  >  2:2359027/1‑93 (MQ=255)

             aaaaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTtata                                                                               <  2:732972/93‑1 (MQ=255)

              aaaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAg                                                                              <  2:4081624/93‑1 (MQ=255)

               aaGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGt                                                                             <  1:282753/93‑1 (MQ=255)

                 gATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGc                                                                           <  2:595527/93‑1 (MQ=255)

                   tGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGa                                                                         <  2:2611194/93‑1 (MQ=255)

                    gAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAt                                                                        <  1:2909258/93‑1 (MQ=255)

                    gAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAt                                                                        <  1:1040372/93‑1 (MQ=255)

                     aGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAtt                                                                       <  1:4148307/93‑1 (MQ=255)

                      gTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTc                                                                      <  1:2049252/93‑1 (MQ=255)

                      gTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTc                                                                      >  1:5953088/1‑93 (MQ=255)

                       tCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTcc                                                                     >  1:2368109/1‑93 (MQ=255)

                         tGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCt                                                                   <  2:5189555/93‑1 (MQ=255)

                         tGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCt                                                                   >  2:6130037/1‑93 (MQ=255)

                          gATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCtt                                                                  <  1:4668383/93‑1 (MQ=255)

                          gATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCtt                                                                  <  2:1825885/93‑1 (MQ=255)

                            tAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCtttt                                                                <  1:4826109/93‑1 (MQ=255)

                              ggACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtat                                                              <  1:2575940/93‑1 (MQ=255)

                              ggACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtat                                                              >  2:3046238/1‑93 (MQ=255)

                               gACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtata                                                             <  1:5141428/93‑1 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatatt                                                           >  2:1159219/1‑92 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                           <  1:4709628/93‑1 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                           >  1:1116088/1‑93 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                           <  2:5539942/93‑1 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                           >  2:1912774/1‑93 (MQ=255)

                                 cTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTtatata                                                           <  1:3858488/93‑1 (MQ=255)

                                  tCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTatatat                                                          >  1:1207317/1‑93 (MQ=255)

                                   cATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAtt                                                         >  1:723992/1‑93 (MQ=255)

                                   cATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAtt                                                         <  1:1307928/93‑1 (MQ=255)

                                      atTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTc                                                      <  2:3867064/93‑1 (MQ=255)

                                       ttGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCt                                                     <  2:2693330/93‑1 (MQ=255)

                                       ttGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCt                                                     <  1:2288124/93‑1 (MQ=255)

                                        tgatgaTCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTg                                                    <  1:4438974/93‑1 (MQ=255)

                                         gatgatCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGc                                                   <  2:4593164/93‑1 (MQ=255)

                                         gatgatCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTCTATATATTTTCTGc                                                   <  2:3850659/93‑1 (MQ=255)

                                          atgatCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCa                                                  <  1:6121787/93‑1 (MQ=255)

                                             atCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTg                                               <  1:4023005/93‑1 (MQ=255)

                                              tCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGt                                              >  2:4016549/1‑93 (MQ=255)

                                               cTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGCTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGtt                                             >  2:183817/1‑93 (MQ=255)

                                                tttACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTa                                            <  2:1324291/93‑1 (MQ=255)

                                                tttACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTa                                            <  2:2906355/93‑1 (MQ=255)

                                                 ttACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAt                                           >  2:5729373/1‑93 (MQ=255)

                                                  tACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAtt                                          <  2:5644614/93‑1 (MQ=255)

                                                     ttCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCtt                                       >  1:4849850/1‑93 (MQ=255)

                                                     ttCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCtt                                       <  2:5849302/93‑1 (MQ=255)

                                                      tCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCttt                                      >  1:6216941/1‑93 (MQ=255)

                                                      tCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCttt                                      <  1:2722213/93‑1 (MQ=255)

                                                         gTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                                   >  1:4754776/1‑93 (MQ=255)

                                                         gTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                                   >  2:4875383/1‑93 (MQ=255)

                                                         gTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                                   >  1:4270286/1‑93 (MQ=255)

                                                         gTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                                   <  1:96250/93‑1 (MQ=255)

                                                         gTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                                   <  1:3365235/93‑1 (MQ=255)

                                                          tATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTc                                  >  2:4759055/1‑93 (MQ=255)

                                                           aTTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTcc                                 >  1:1501250/1‑93 (MQ=255)

                                                           aTTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTcc                                 <  2:4294998/93‑1 (MQ=255)

                                                            tttGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCa                                <  1:818388/93‑1 (MQ=255)

                                                            tttGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCa                                <  2:3730642/93‑1 (MQ=255)

                                                               ggATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTc                             <  1:5363081/93‑1 (MQ=255)

                                                               ggATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTc                             >  1:6143074/1‑93 (MQ=255)

                                                               ggATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTc                             <  2:2384801/93‑1 (MQ=255)

                                                                gATTTGCCAATAGCCCATCGGCATATCACTTAATGGGGTATAGTGCGATTCCTTTGTATATATTTTCTGCATTGTTATTCTTTATTCCATTCg                            >  2:6308328/1‑93 (MQ=255)

                                                                  tttGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGcc                          <  2:2194750/93‑1 (MQ=255)

                                                                  tttGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGcc                          <  1:5539807/93‑1 (MQ=255)

                                                                  tttGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGcc                          >  1:3780934/1‑93 (MQ=255)

                                                                   ttGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCt                         <  2:3013432/93‑1 (MQ=255)

                                                                     gCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTa                       >  2:1968381/1‑93 (MQ=255)

                                                                     gCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTa                       >  1:3257151/1‑93 (MQ=255)

                                                                     gCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTa                       <  2:5419479/93‑1 (MQ=255)

                                                                      ccAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTaa                      >  2:142694/1‑93 (MQ=255)

                                                                      ccAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTaa                      <  2:3629408/93‑1 (MQ=255)

                                                                       cAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAat                     <  2:1394714/93‑1 (MQ=255)

                                                                         aTAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatga                   >  2:4129778/1‑93 (MQ=255)

                                                                         aTAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatga                   >  1:5645877/1‑93 (MQ=255)

                                                                          tAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatgat                  >  1:3467689/1‑93 (MQ=255)

                                                                          tAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatgat                  <  1:5506000/93‑1 (MQ=255)

                                                                          tAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatgat                  >  1:5825719/1‑93 (MQ=255)

                                                                           aGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAatgatg                 <  2:3290396/93‑1 (MQ=255)

                                                                            gCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATgg                >  2:2111487/1‑93 (MQ=255)

                                                                             cccATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGc               <  1:1973930/93‑1 (MQ=255)

                                                                              ccATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCt              <  1:3516254/93‑1 (MQ=255)

                                                                                aTCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGa            <  1:1402584/93‑1 (MQ=255)

                                                                                aTCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGa            >  1:2428164/1‑93 (MQ=255)

                                                                                  cGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGaaa          <  1:186897/93‑1 (MQ=255)

                                                                                   ggCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAAt         <  1:631264/93‑1 (MQ=255)

                                                                                   ggCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAAt         <  1:4547332/93‑1 (MQ=255)

                                                                                    gCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATg        <  2:5627451/93‑1 (MQ=255)

                                                                                    gCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATg        <  2:4475752/93‑1 (MQ=255)

                                                                                    gCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATg        <  2:252396/93‑1 (MQ=255)

                                                                                      ttatcaCTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATggg      >  2:3330731/1‑93 (MQ=255)

                                                                                       tatcaCTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGa     >  1:2765192/1‑93 (MQ=255)

CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  >  NC_000913/4381420‑4381602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  >  NC_000913/4381418‑4381602

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCA                                                                                             >  SRR4302533.295262/1‑94 (MQ=60)

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCA                                                                                             >  SRR4302533.2380310/1‑94 (MQ=60)

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCA                                                                                             >  SRR4302533.5449632/1‑94 (MQ=60)

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCA                                                                                             >  SRR4302533.5084195/1‑94 (MQ=60)

 GCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCAC                                                                                            <  SRR4302533.2412161/94‑1 (MQ=60)

 GCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCAC                                                                                            >  SRR4302533.2022534/1‑94 (MQ=60)

  CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACT                                                                                           <  SRR4302533.5887225/94‑1 (MQ=60)

  CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACT                                                                                           >  SRR4302533.4283501/1‑94 (MQ=60)

  CCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACT                                                                                           <  SRR4302533.3694158/94‑1 (MQ=60)

   CTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTT                                                                                          >  SRR4302533.253949/1‑94 (MQ=60)

   CTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTT                                                                                          >  SRR4302533.193243/1‑94 (MQ=60)

    TCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTA                                                                                         <  SRR4302533.1357985/94‑1 (MQ=60)

    TCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTA                                                                                         >  SRR4302533.1659372/1‑94 (MQ=60)

    TCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTCACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTA                                                                                         <  SRR4302533.6237022/94‑1 (MQ=60)

      ACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTATT                                                                                       <  SRR4302533.766649/94‑1 (MQ=60)

      ACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAAT                                                                                       <  SRR4302533.5442988/94‑1 (MQ=60)

       CACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATG                                                                                      >  SRR4302533.5482051/1‑94 (MQ=60)

          GATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGT                                                                                   >  SRR4302533.2430880/1‑94 (MQ=60)

          GATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGT                                                                                   >  SRR4302533.4993814/1‑94 (MQ=60)

            TAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTA                                                                                 >  SRR4302533.2373636/1‑94 (MQ=60)

             AAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTAT                                                                                <  SRR4302533.5548401/94‑1 (MQ=60)

             AAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTAT                                                                                >  SRR4302533.2726458/1‑94 (MQ=60)

              AAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATA                                                                               <  SRR4302533.1151518/94‑1 (MQ=60)

               AAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAG                                                                              <  SRR4302533.457745/94‑1 (MQ=60)

               AAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAG                                                                              >  SRR4302533.6327299/1‑94 (MQ=60)

               AAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAG                                                                              >  SRR4302533.2390479/1‑94 (MQ=60)

                AAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGT                                                                             <  SRR4302533.2195047/94‑1 (MQ=60)

                 AAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTG                                                                            <  SRR4302533.284485/94‑1 (MQ=60)

                  AGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGC                                                                           >  SRR4302533.540940/1‑94 (MQ=60)

                   GATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCG                                                                          <  SRR4302533.73175/94‑1 (MQ=60)

                   GATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCG                                                                          <  SRR4302533.682201/94‑1 (MQ=60)

                     TGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAT                                                                        <  SRR4302533.616568/94‑1 (MQ=60)

                      GAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATT                                                                       <  SRR4302533.2495282/94‑1 (MQ=60)

                      GAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATT                                                                       <  SRR4302533.348577/94‑1 (MQ=60)

                      GAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATT                                                                       <  SRR4302533.2927118/94‑1 (MQ=60)

                      GAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATT                                                                       <  SRR4302533.1046489/94‑1 (MQ=60)

                       AGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTC                                                                      <  SRR4302533.4173440/94‑1 (MQ=60)

                       AGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTC                                                                      >  SRR4302533.5989098/1‑94 (MQ=60)

                       AGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTC                                                                      >  SRR4302533.5649047/1‑94 (MQ=60)

                       AGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTC                                                                      >  SRR4302533.627638/1‑94 (MQ=60)

                       AGTCTGATAGGACTCATATTGACGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTC                                                                      <  SRR4302533.2345812/94‑1 (MQ=60)

                        GTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCC                                                                     <  SRR4302533.2061892/94‑1 (MQ=60)

                        GTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCC                                                                     <  SRR4302533.125032/94‑1 (MQ=60)

                        GTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCC                                                                     >  SRR4302533.2382763/1‑94 (MQ=60)

                        GTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCC                                                                     <  SRR4302533.1556952/94‑1 (MQ=60)

                         TCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCC                                                                    >  SRR4302533.200517/1‑94 (MQ=60)

                          CTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCT                                                                   >  SRR4302533.4410190/1‑94 (MQ=60)

                          CTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCT                                                                   <  SRR4302533.4191823/94‑1 (MQ=60)

                           TGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTT                                                                  >  SRR4302533.1593965/1‑94 (MQ=60)

                            GATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTT                                                                 <  SRR4302533.4696669/94‑1 (MQ=60)

                              TAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTA                                                               <  SRR4302533.4855354/94‑1 (MQ=60)

                              TAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTA                                                               <  SRR4302533.6235687/94‑1 (MQ=60)

                               AGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTAT                                                              >  SRR4302533.5016134/1‑94 (MQ=60)

                               AGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTAT                                                              <  SRR4302533.1724487/94‑1 (MQ=60)

                                GGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATA                                                             >  SRR4302533.5394912/1‑94 (MQ=60)

                                GGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATA                                                             <  SRR4302533.6165710/94‑1 (MQ=60)

                                GGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATA                                                             <  SRR4302533.2591787/94‑1 (MQ=60)

                                 GACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATAT                                                            <  SRR4302533.5421402/94‑1 (MQ=60)

                                 GACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATAT                                                            <  SRR4302533.5172500/94‑1 (MQ=60)

                                 GACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATAT                                                            >  SRR4302533.3220663/1‑94 (MQ=60)

                                  ACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATA                                                           >  SRR4302533.2917758/1‑94 (MQ=60)

                                  ACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATA                                                           >  SRR4302533.1122710/1‑94 (MQ=60)

                                   CTCATATTGATGATCTTTCCTTCCGCATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGAGTCCCTTTTATCTAT                                                          >  SRR4302533.3325979/1‑94 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCGTCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          <  SRR4302533.4751013/94‑1 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          >  SRR4302533.948809/1‑94 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          >  SRR4302533.1214564/1‑94 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          <  SRR4302533.4699931/94‑1 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          <  SRR4302533.3882046/94‑1 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          <  SRR4302533.4738172/94‑1 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          >  SRR4302533.2700408/1‑94 (MQ=60)

                                   CTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATAT                                                          <  SRR4302533.5350347/94‑1 (MQ=60)

                                    TCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATT                                                         >  SRR4302533.4825892/1‑94 (MQ=60)

                                    TCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATT                                                         >  SRR4302533.728271/1‑94 (MQ=60)

                                     CATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTT                                                        <  SRR4302533.1315782/94‑1 (MQ=60)

                                     CATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTT                                                        >  SRR4302533.3535114/1‑94 (MQ=60)

                                      ATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTT                                                       <  SRR4302533.36760/94‑1 (MQ=60)

                                        ATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCT                                                     <  SRR4302533.4779047/94‑1 (MQ=60)

                                         TTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTG                                                    <  SRR4302533.2302291/94‑1 (MQ=60)

                                          TGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGC                                                   <  SRR4302533.4465806/94‑1 (MQ=60)

                                           GATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCA                                                  >  SRR4302533.3877510/1‑94 (MQ=60)

                                           GATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCA                                                  <  SRR4302533.1899346/94‑1 (MQ=60)

                                           GATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCA                                                  >  SRR4302533.2832651/1‑94 (MQ=60)

                                            ATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCAT                                                 <  SRR4302533.6158700/94‑1 (MQ=60)

                                            ATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCAT                                                 >  SRR4302533.5519528/1‑94 (MQ=60)

                                             TGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATT                                                <  SRR4302533.4857948/94‑1 (MQ=60)

                                             TGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCATATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATT                                                >  SRR4302533.4471426/1‑94 (MQ=60)

                                              GATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTG                                               >  SRR4302533.493622/1‑94 (MQ=60)

                                               ATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGT                                              <  SRR4302533.4047499/94‑1 (MQ=60)

                                               ATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGT                                              <  SRR4302533.5547411/94‑1 (MQ=60)

                                               ATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGT                                              >  SRR4302533.6159398/1‑94 (MQ=60)

                                                TCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATAAATTTTCTGCATTGTT                                             <  SRR4302533.3865598/94‑1 (MQ=60)

                                                 CTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTA                                            >  SRR4302533.5490023/1‑94 (MQ=60)

                                                  TTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAT                                           <  SRR4302533.5617163/94‑1 (MQ=60)

                                                  TTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAT                                           >  SRR4302533.6083940/1‑94 (MQ=60)

                                                   TTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATT                                          >  SRR4302533.2253184/1‑94 (MQ=60)

                                                    TACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTC                                         >  SRR4302533.1412887/1‑94 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                       <  SRR4302533.4375794/94‑1 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                       >  SRR4302533.4879242/1‑94 (MQ=60)

                                                      CTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTT                                       <  SRR4302533.4122082/94‑1 (MQ=60)

                                                       TTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTT                                      >  SRR4302533.6254219/1‑94 (MQ=60)

                                                       TTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTT                                      <  SRR4302533.4049930/94‑1 (MQ=60)

                                                       TTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTT                                      <  SRR4302533.1215320/94‑1 (MQ=60)

                                                        TCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTA                                     <  SRR4302533.2738919/94‑1 (MQ=60)

                                                        TCCGTATTTGGAGTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTA                                     <  SRR4302533.2738920/94‑1 (MQ=60)

                                                         CCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAT                                    <  SRR4302533.486730/94‑1 (MQ=60)

                                                         CCGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAT                                    >  SRR4302533.5833239/1‑94 (MQ=60)

                                                          CGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATT                                   >  SRR4302533.4783627/1‑94 (MQ=60)

                                                          CGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATT                                   <  SRR4302533.1101549/94‑1 (MQ=60)

                                                          CGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATT                                   >  SRR4302533.4295991/1‑94 (MQ=60)

                                                          CGTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATT                                   <  SRR4302533.3996038/94‑1 (MQ=60)

                                                           GTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTC                                  <  SRR4302533.96853/94‑1 (MQ=60)

                                                           GTATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTC                                  <  SRR4302533.3386023/94‑1 (MQ=60)

                                                            TATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCC                                 >  SRR4302533.1510298/1‑94 (MQ=60)

                                                            TATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCC                                 >  SRR4302533.1776547/1‑94 (MQ=60)

                                                             ATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCA                                >  SRR4302533.3373001/1‑94 (MQ=60)

                                                             ATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCA                                <  SRR4302533.1408449/94‑1 (MQ=60)

                                                             ATTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTGATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCA                                >  SRR4302533.3400769/1‑94 (MQ=60)

                                                              TTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAT                               <  SRR4302533.5817059/94‑1 (MQ=60)

                                                              TTTGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAT                               <  SRR4302533.823180/94‑1 (MQ=60)

                                                                TGGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTC                             >  SRR4302533.6180065/1‑94 (MQ=60)

                                                                 GGATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCG                            <  SRR4302533.5395292/94‑1 (MQ=60)

                                                                   ATTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCC                          >  SRR4302533.3804094/1‑94 (MQ=60)

                                                                    TTTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCT                         <  SRR4302533.5573262/94‑1 (MQ=60)

                                                                     TTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTT                        >  SRR4302533.5130253/1‑94 (MQ=60)

                                                                     TTGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTT                        <  SRR4302533.907027/94‑1 (MQ=60)

                                                                      TGCCAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTA                       >  SRR4302533.3277238/1‑94 (MQ=60)

                                                                         CAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATG                    >  SRR4302533.2941977/1‑94 (MQ=60)

                                                                         CAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATG                    <  SRR4302533.4786753/94‑1 (MQ=60)

                                                                         CAATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATG                    >  SRR4302533.4930247/1‑94 (MQ=60)

                                                                          AATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGA                   >  SRR4302533.5680009/1‑94 (MQ=60)

                                                                          AATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGA                   >  SRR4302533.4831551/1‑94 (MQ=60)

                                                                           ATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGAT                  >  SRR4302533.3489093/1‑94 (MQ=60)

                                                                           ATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGAT                  <  SRR4302533.4516805/94‑1 (MQ=60)

                                                                           ATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGAT                  >  SRR4302533.5860920/1‑94 (MQ=60)

                                                                           ATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGAT                  <  SRR4302533.3921993/94‑1 (MQ=60)

                                                                           ATAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGAT                  <  SRR4302533.4724509/94‑1 (MQ=60)

                                                                            TAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATG                 <  SRR4302533.5539227/94‑1 (MQ=60)

                                                                            TAGCCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATG                 <  SRR4302533.3346645/94‑1 (MQ=60)

                                                                               CCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCT              <  SRR4302533.1986016/94‑1 (MQ=60)

                                                                               CCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCT              <  SRR4302533.2781062/94‑1 (MQ=60)

                                                                               CCCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCT              >  SRR4302533.6004295/1‑94 (MQ=60)

                                                                               CCCATCGGCTTATCACTTAATGGGTTATAGGGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCT              >  SRR4302533.1117049/1‑94 (MQ=60)

                                                                                CCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTG             <  SRR4302533.3537932/94‑1 (MQ=60)

                                                                                CCATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTG             >  SRR4302533.2796093/1‑94 (MQ=60)

                                                                                 CATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGA            >  SRR4302533.2443176/1‑94 (MQ=60)

                                                                                  ATCGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAA           <  SRR4302533.1411044/94‑1 (MQ=60)

                                                                                    CGGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAAT         <  SRR4302533.188059/94‑1 (MQ=60)

                                                                                     GGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATG        <  SRR4302533.634978/94‑1 (MQ=60)

                                                                                     GGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATG        >  SRR4302533.1412237/1‑94 (MQ=60)

                                                                                     GGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATG        <  SRR4302533.4574870/94‑1 (MQ=60)

                                                                                     GGCTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATG        >  SRR4302533.3529897/1‑94 (MQ=60)

                                                                                       CTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGG      >  SRR4302533.2867717/1‑94 (MQ=60)

                                                                                       CTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGG      >  SRR4302533.4066007/1‑94 (MQ=60)

                                                                                       CTTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGG      <  SRR4302533.594842/94‑1 (MQ=60)

                                                                                        TTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA     >  SRR4302533.1822855/1‑94 (MQ=60)

                                                                                        TTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA     >  SRR4302533.2782147/1‑94 (MQ=60)

                                                                                        TTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA     <  SRR4302533.1191167/94‑1 (MQ=60)

                                                                                        TTATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGA     >  SRR4302533.72016/1‑94 (MQ=60)

                                                                                         TATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAG    <  SRR4302533.2502989/94‑1 (MQ=60)

                                                                                         TATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAG    <  SRR4302533.4603740/94‑1 (MQ=60)

                                                                                          ATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGACATGGGAGC   >  SRR4302533.1578303/1‑94 (MQ=60)

                                                                                          ATCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGC   >  SRR4302533.1720764/1‑94 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  <  SRR4302533.5959593/94‑1 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  >  SRR4302533.133955/1‑94 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  <  SRR4302533.4247306/94‑1 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  <  SRR4302533.2431485/94‑1 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  <  SRR4302533.4049832/94‑1 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  <  SRR4302533.2162163/94‑1 (MQ=60)

                                                                                           TCACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTACTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  <  SRR4302533.2704292/94‑1 (MQ=60)

TGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAATGATGGCTGAAATGGGAGCT  >  NC_000913/4381418‑4381602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`