Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,436,592	G→A	A83V (GCG→GTG)	ytfJ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,436,592	0	G	A	100.0%	859.2 / NA	236	A83V (GCG→GTG)	ytfJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (118/118); total (118/118)

Only 100 of 238 total aligned reads displayed.

ACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTG  >  NC_000913/4436502‑4436681

acaAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACt                                                                                         <  1:4773350/93‑1 (MQ=255)

acaAACAGCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATGTAATCACt                                                                                         <  2:6110102/93‑1 (MQ=255)

 caAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACtt                                                                                        >  2:225369/1‑93 (MQ=255)

 caAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACtt                                                                                        >  2:5173277/1‑93 (MQ=255)

 caAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACtt                                                                                        >  2:319437/1‑93 (MQ=255)

  aaaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTc                                                                                       <  1:393335/93‑1 (MQ=255)

  aaaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTc                                                                                       >  1:2161049/1‑93 (MQ=255)

   aaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCa                                                                                      >  1:5529670/1‑93 (MQ=255)

   aaCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCa                                                                                      >  1:2388477/1‑93 (MQ=255)

    aCATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCaa                                                                                     <  2:3350651/93‑1 (MQ=255)

     cATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAAt                                                                                    <  2:2712172/93‑1 (MQ=255)

      aTCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATc                                                                                   <  2:4087684/93‑1 (MQ=255)

      aTCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATc                                                                                   <  1:415048/93‑1 (MQ=255)

       tCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCa                                                                                  >  1:1371599/1‑93 (MQ=255)

        cccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAg                                                                                 >  1:2892762/1‑93 (MQ=255)

         ccTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGc                                                                                <  2:872496/93‑1 (MQ=255)

          cTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCg                                                                               <  1:472108/93‑1 (MQ=255)

           tGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGt                                                                              <  2:2745034/93‑1 (MQ=255)

           tGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGt                                                                              >  2:5695974/1‑93 (MQ=255)

           tGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGt                                                                              >  1:1622231/1‑93 (MQ=255)

            gAACCCGGTATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTc                                                                             <  1:5660361/93‑1 (MQ=255)

                ccGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGt                                                                         >  2:4762690/1‑93 (MQ=255)

                 cGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGtt                                                                        >  2:2312790/1‑93 (MQ=255)

                 cGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCCCTGATTTAATCACTTCAATCAGCGTCGCGtt                                                                        <  2:5039602/93‑1 (MQ=255)

                   gAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGtttt                                                                      >  2:6253281/1‑93 (MQ=255)

                    aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCTCTGATTTAATCACTTCAATCAGCGTCGCGttttt                                                                     >  1:6298660/1‑93 (MQ=255)

                    aaTCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGttttt                                                                     >  2:1084772/1‑93 (MQ=255)

                        gcgTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTctct                                                                 <  1:121097/93‑1 (MQ=255)

                        gcgTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTctct                                                                 <  2:5606739/93‑1 (MQ=255)

                         cgtcgtCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCtt                                                                <  2:5504991/93‑1 (MQ=255)

                          gtcgtcGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCttt                                                               <  1:5068799/93‑1 (MQ=255)

                           tcgtcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCtttt                                                              >  2:1500936/1‑93 (MQ=255)

                             gtcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGc                                                            >  2:3693405/1‑93 (MQ=255)

                              tcgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCa                                                           >  2:1601030/1‑93 (MQ=255)

                               cgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCag                                                          >  1:3039983/1‑93 (MQ=255)

                               cgGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCag                                                          <  1:74603/93‑1 (MQ=255)

                                ggTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCaga                                                         <  1:916269/93‑1 (MQ=255)

                                  tgtTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAgg                                                       <  2:4630321/93‑1 (MQ=255)

                                   gtTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGt                                                      <  1:4365573/93‑1 (MQ=255)

                                   gtTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGt                                                      >  2:2153182/1‑93 (MQ=255)

                                    ttAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTg                                                     >  1:2704323/1‑93 (MQ=255)

                                    ttAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTg                                                     <  2:6041852/93‑1 (MQ=255)

                                    ttAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTAGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTg                                                     >  1:873854/1‑93 (MQ=255)

                                     tAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGc                                                    >  1:5345187/1‑93 (MQ=255)

                                       aCAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGa                                                  >  1:3525205/1‑93 (MQ=255)

                                       aCAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGa                                                  >  1:6119456/1‑93 (MQ=255)

                                         aaTGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc                                                >  1:3217251/1‑93 (MQ=255)

                                         aaTGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGGGCGAcc                                                >  2:3525580/1‑93 (MQ=255)

                                          aTGGTGGTGTTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCa                                               <  2:261869/93‑1 (MQ=255)

                                           tggtgggggTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAg                                              <  1:6193926/93‑1 (MQ=255)

                                             gtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa                                            >  1:3473717/1‑93 (MQ=255)

                                             gtggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa                                            >  1:478502/1‑93 (MQ=255)

                                               ggtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAat                                          <  2:4844956/93‑1 (MQ=255)

                                                gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAata                                         <  1:176893/93‑1 (MQ=255)

                                                gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAata                                         <  2:1760060/93‑1 (MQ=255)

                                                gtggtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAata                                         <  2:626341/93‑1 (MQ=255)

                                                   gtCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGt                                      <  2:4160169/93‑1 (MQ=255)

                                                      tGGTAACGATCGTGCGGTAACTTCGCTGATTTAATTACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATAtgctgc                                   >  2:3967414/1‑93 (MQ=255)

                                                       ggTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa                                  <  2:3884318/93‑1 (MQ=255)

                                                       ggTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa                                  <  1:1182644/93‑1 (MQ=255)

                                                       ggTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa                                  <  1:5598531/93‑1 (MQ=255)

                                                       ggTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa                                  <  2:3009143/93‑1 (MQ=255)

                                                         gaaCGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGt                                <  1:4257350/92‑1 (MQ=255)

                                                          aaCGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTa                               >  2:3600504/1‑93 (MQ=255)

                                                           aCGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAc                              <  1:4158426/93‑1 (MQ=255)

                                                           aCGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAc                              <  2:4303957/93‑1 (MQ=255)

                                                           aCGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAc                              >  1:2555015/1‑93 (MQ=255)

                                                              aTCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCg                           >  1:1729539/1‑93 (MQ=255)

                                                                 gTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc                        <  1:498143/93‑1 (MQ=255)

                                                                 gTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc                        <  2:2005253/93‑1 (MQ=255)

                                                                 gTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAc                        >  2:2448941/1‑93 (MQ=255)

                                                                  tGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACt                       >  2:5895758/1‑93 (MQ=255)

                                                                  tGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACt                       >  2:257123/1‑93 (MQ=255)

                                                                    cGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACttt                     <  2:3311536/93‑1 (MQ=255)

                                                                    cGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACttt                     <  2:5387447/93‑1 (MQ=255)

                                                                     ggaaaCTTCGATGATTTAATCACTTCAATCAGAGTCGCGTTTTTCTCTTTTGCAGAGGTGCGATCAGCAATATGTTGCAGTACTCGCACtttt                    >  2:4230626/4‑93 (MQ=255)

                                                                     ggTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACtttt                    >  2:4532002/1‑93 (MQ=255)

                                                                      gTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCCATATGTTGCAGTACTCGCACTTTTc                   >  1:4345297/1‑93 (MQ=255)

                                                                       tAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTcc                  <  1:651435/93‑1 (MQ=255)

                                                                       tAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTcc                  >  1:390492/1‑93 (MQ=255)

                                                                       tAACTTCGCTGATGTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTcc                  <  2:1823018/93‑1 (MQ=255)

                                                                        aaCTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTccc                 >  2:4874697/1‑93 (MQ=255)

                                                                         aCTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCa                <  2:2040241/93‑1 (MQ=255)

                                                                         aCTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCa                >  1:888886/1‑93 (MQ=255)

                                                                          cTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCAc               <  2:1282153/93‑1 (MQ=255)

                                                                          cTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCACACTTTTCCCAc               >  1:3357591/1‑93 (MQ=255)

                                                                           ttCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACt              >  1:293933/1‑93 (MQ=255)

                                                                           ttCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACt              >  2:3805279/1‑93 (MQ=255)

                                                                            tCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTa             >  1:3443089/1‑93 (MQ=255)

                                                                             cGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTaa            >  2:2860934/1‑93 (MQ=255)

                                                                             cGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTaa            >  2:5816222/1‑93 (MQ=255)

                                                                              gCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAAc           >  2:4937944/1‑93 (MQ=255)

                                                                                tGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTg         >  1:2018395/1‑93 (MQ=255)

                                                                                 gATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgc        <  1:4042143/93‑1 (MQ=255)

                                                                                 gATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgc        <  2:709234/93‑1 (MQ=255)

                                                                                 gATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgc        <  1:5449051/93‑1 (MQ=255)

                                                                                   tttAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgc      >  2:2398582/1‑93 (MQ=255)

                                                                                     tAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTgcgcgc    <  2:847754/93‑1 (MQ=255)

                                                                                      aaTCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCt   <  1:990815/93‑1 (MQ=255)

                                                                                       aTCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTg  >  2:1534458/1‑93 (MQ=255)

ACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTG  >  NC_000913/4436502‑4436681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTC  >  NC_000913/4436499‑4436684

CGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCA                                                                                              <  SRR4302533.4432912/94‑1 (MQ=60)

   ACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTT                                                                                           <  SRR4302533.4802274/94‑1 (MQ=60)

   ACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTT                                                                                           >  SRR4302533.281512/1‑94 (MQ=60)

   ACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTT                                                                                           >  SRR4302533.4786602/1‑94 (MQ=60)

    CAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTC                                                                                          >  SRR4302533.6307245/1‑94 (MQ=60)

    CAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTC                                                                                          <  SRR4302533.5059234/94‑1 (MQ=60)

    CAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTC                                                                                          >  SRR4302533.2174350/1‑94 (MQ=60)

     AAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCA                                                                                         >  SRR4302533.5563052/1‑94 (MQ=60)

     AAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCA                                                                                         <  SRR4302533.395720/94‑1 (MQ=60)

     AAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCA                                                                                         >  SRR4302533.2403232/1‑94 (MQ=60)

      AACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAA                                                                                        <  SRR4302533.5654576/94‑1 (MQ=60)

        CATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATC                                                                                      >  SRR4302533.4975088/1‑94 (MQ=60)

         ATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCA                                                                                     >  SRR4302533.1379846/1‑94 (MQ=60)

         ATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCA                                                                                     <  SRR4302533.930742/94‑1 (MQ=60)

         ATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCA                                                                                     <  SRR4302533.916046/94‑1 (MQ=60)

         ATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCA                                                                                     <  SRR4302533.417541/94‑1 (MQ=60)

          TCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAG                                                                                    >  SRR4302533.2910542/1‑94 (MQ=60)

          TCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAG                                                                                    >  SRR4302533.2910543/1‑94 (MQ=60)

           CCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCCGTAACTTCTGTGATTTAATCACTTCAATCtcg                                                                                   >  SRR4302533.5099518/1‑91 (MQ=60)

             CTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGT                                                                                 <  SRR4302533.5304014/94‑1 (MQ=60)

             CTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGT                                                                                 >  SRR4302533.1197021/1‑94 (MQ=60)

             CTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGT                                                                                 >  SRR4302533.1632061/1‑94 (MQ=60)

             CTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGT                                                                                 <  SRR4302533.474930/94‑1 (MQ=60)

              CGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTC                                                                                <  SRR4302533.4377833/94‑1 (MQ=60)

               GAACCCGGTATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCG                                                                               <  SRR4302533.5694563/94‑1 (MQ=60)

               GAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCG                                                                               <  SRR4302533.3947532/94‑1 (MQ=60)

                 ACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCG                                                                             <  SRR4302533.135346/94‑1 (MQ=60)

                      GAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCTCTGATTTAATCACTTCAATCAGCGTCGCGTTTTT                                                                        >  SRR4302533.6336259/1‑94 (MQ=60)

                       AATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTC                                                                       <  SRR4302533.2381099/94‑1 (MQ=60)

                          CGCGTCGTCGGTGTTAACAATGGTGTTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCT                                                                    <  SRR4302533.428250/94‑1 (MQ=60)

                          CGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCT                                                                    >  SRR4302533.4659995/1‑94 (MQ=60)

                          CGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCT                                                                    <  SRR4302533.3138046/94‑1 (MQ=60)

                           GCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTT                                                                   <  SRR4302533.121863/94‑1 (MQ=60)

                            CGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTT                                                                  <  SRR4302533.3648171/94‑1 (MQ=60)

                            CGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTT                                                                  <  SRR4302533.1998112/94‑1 (MQ=60)

                             GTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTT                                                                 <  SRR4302533.5099405/94‑1 (MQ=60)

                             GTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTT                                                                 <  SRR4302533.4330064/94‑1 (MQ=60)

                              TCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTG                                                                >  SRR4302533.3008416/1‑94 (MQ=60)

                              GCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTG                                                                <  SRR4302533.338084/94‑1 (MQ=60)

                                GTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCA                                                              <  SRR4302533.2632855/94‑1 (MQ=60)

                                GTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCA                                                              <  SRR4302533.4180879/94‑1 (MQ=60)

                                 TCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAG                                                             >  SRR4302533.3058588/1‑94 (MQ=60)

                                  CGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGA                                                            <  SRR4302533.75088/94‑1 (MQ=60)

                                   GGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAG                                                           <  SRR4302533.921652/94‑1 (MQ=60)

                                     TGTTAAGAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGT                                                         <  SRR4302533.966991/94‑1 (MQ=60)

                                      GTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTG                                                        >  SRR4302533.2720911/1‑94 (MQ=60)

                                      GTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTG                                                        <  SRR4302533.4391928/94‑1 (MQ=60)

                                      GTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTAGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTG                                                        >  SRR4302533.878985/1‑94 (MQ=60)

                                       TTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGC                                                       <  SRR4302533.5396167/94‑1 (MQ=60)

                                       TTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGC                                                       >  SRR4302533.5377242/1‑94 (MQ=60)

                                        TAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGTG                                                      <  SRR4302533.6336665/94‑1 (MQ=60)

                                        TAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCG                                                      <  SRR4302533.5598650/94‑1 (MQ=60)

                                         AACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGA                                                     >  SRR4302533.6156361/1‑94 (MQ=60)

                                         AACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGA                                                     >  SRR4302533.3546930/1‑94 (MQ=60)

                                           CAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACC                                                   >  SRR4302533.3237090/1‑94 (MQ=60)

                                            AATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCA                                                  <  SRR4302533.77760/94‑1 (MQ=60)

                                             ATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAG                                                 <  SRR4302533.4802838/94‑1 (MQ=60)

                                              TGGTGGGGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGC                                                <  SRR4302533.6231091/94‑1 (MQ=60)

                                               GGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCA                                               >  SRR4302533.1429907/1‑94 (MQ=60)

                                               GGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCA                                               >  SRR4302533.3495152/1‑94 (MQ=60)

                                               GGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCA                                               >  SRR4302533.481359/1‑94 (MQ=60)

                                                GTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAA                                              <  SRR4302533.5552348/94‑1 (MQ=60)

                                                   GTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATAT                                           <  SRR4302533.2223220/94‑1 (MQ=60)

                                                   GTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATAT                                           <  SRR4302533.178003/94‑1 (MQ=60)

                                                     GGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGT                                         <  SRR4302533.883227/94‑1 (MQ=60)

                                                     GGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGT                                         <  SRR4302533.3432035/94‑1 (MQ=60)

                                                        CTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGC                                      >  SRR4302533.5568232/1‑94 (MQ=60)

                                                         TGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCA                                     <  SRR4302533.2793469/94‑1 (MQ=60)

                                                          GGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAG                                    <  SRR4302533.5632355/94‑1 (MQ=60)

                                                          GGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAG                                    <  SRR4302533.1189747/94‑1 (MQ=60)

                                                          GGTAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAG                                    <  SRR4302533.2071547/94‑1 (MQ=60)

                                                            TAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTA                                  >  SRR4302533.5815265/1‑94 (MQ=60)

                                                            GAACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTA                                  <  SRR4302533.4283016/94‑1 (MQ=60)

                                                             AACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAC                                 >  SRR4302533.2570733/1‑94 (MQ=60)

                                                             AACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAC                                 >  SRR4302533.4174978/1‑94 (MQ=60)

                                                              ACGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACT                                <  SRR4302533.4183625/94‑1 (MQ=60)

                                                               CGATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTC                               >  SRR4302533.3506606/1‑94 (MQ=60)

                                                                GATCGTGCTGTAACTTCGCTGATTTAATCACTTCAAGCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCG                              <  SRR4302533.4802890/94‑1 (MQ=60)

                                                                GATCGTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCG                              >  SRR4302533.1740025/1‑94 (MQ=60)

                                                                   CGTGCTGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCAC                           >  SRR4302533.888874/1‑94 (MQ=60)

                                                                    GTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTTCAGAGGTGCGACCAGCAATATTTTGCAGTACTCGCACT                          >  SRR4302533.3310952/1‑94 (MQ=60)

                                                                    GTGCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACT                          <  SRR4302533.501110/94‑1 (MQ=60)

                                                                      GCGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTT                        <  SRR4302533.2502245/94‑1 (MQ=60)

                                                                       CGGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTT                       <  SRR4302533.4144958/94‑1 (MQ=60)

                                                                        GGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCCATATGTTGCAGTACTCGCACTTTTC                      >  SRR4302533.4371484/1‑94 (MQ=60)

                                                                        GGTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTC                      >  SRR4302533.1964253/1‑94 (MQ=60)

                                                                         GTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCC                     >  SRR4302533.1765966/1‑94 (MQ=60)

                                                                         GTAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCC                     >  SRR4302533.392853/1‑94 (MQ=60)

                                                                          TAACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCC                    <  SRR4302533.655285/94‑1 (MQ=60)

                                                                           AACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCA                   >  SRR4302533.894106/1‑94 (MQ=60)

                                                                           AACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCA                   <  SRR4302533.5776538/94‑1 (MQ=60)

                                                                           AACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCA                   >  SRR4302533.1700541/1‑94 (MQ=60)

                                                                           AACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCA                   >  SRR4302533.3465575/1‑94 (MQ=60)

                                                                            ACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCAC                  >  SRR4302533.749515/1‑94 (MQ=60)

                                                                            ACTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCACACTTTTCCCAC                  >  SRR4302533.3378339/1‑94 (MQ=60)

                                                                             CTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACT                 >  SRR4302533.295727/1‑94 (MQ=60)

                                                                             CTTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACT                 >  SRR4302533.635/1‑94 (MQ=60)

                                                                              TTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTA                >  SRR4302533.6221372/1‑94 (MQ=60)

                                                                              TTCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTA                >  SRR4302533.3464356/1‑94 (MQ=60)

                                                                               TCGCTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAA               >  SRR4302533.1507673/1‑94 (MQ=60)

                                                                                  CTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTG            <  SRR4302533.3078471/94‑1 (MQ=60)

                                                                                  CTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTG            >  SRR4302533.2030831/1‑94 (MQ=60)

                                                                                  CTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTG            <  SRR4302533.3649978/94‑1 (MQ=60)

                                                                                  CTGATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTG            >  SRR4302533.4687134/1‑94 (MQ=60)

                                                                                    GATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCG          <  SRR4302533.5481875/94‑1 (MQ=60)

                                                                                    GATTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCG          <  SRR4302533.4066744/94‑1 (MQ=60)

                                                                                      TTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCG        >  SRR4302533.3994388/1‑94 (MQ=60)

                                                                                      TTTAATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCG        >  SRR4302533.4185667/1‑94 (MQ=60)

                                                                                         AATCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTG     <  SRR4302533.996611/94‑1 (MQ=60)

                                                                                           TCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTT   <  SRR4302533.3935477/94‑1 (MQ=60)

                                                                                           TCACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTT   <  SRR4302533.1647744/94‑1 (MQ=60)

                                                                                            CACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTC  <  SRR4302533.1154115/94‑1 (MQ=60)

                                                                                            CACTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGAGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTC  >  SRR4302533.4077395/1‑94 (MQ=60)

CGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTACTCGCACTTTTCCCACTAACTGCGCGCTGTTC  >  NC_000913/4436499‑4436684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`