Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 163,255 T→C V399A (GTG→GCG)  hrpB → ATP‑dependent helicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913163,2550TC99.7% 1248.2 / ‑5.7 358V399A (GTG→GCG) hrpBATP‑dependent helicase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (176/181);  total (176/182)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 383 total aligned reads displayed.

CAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCT  >  NC_000913/163164‑163345
                                                                                           |                                                                                          
 aaaGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCACCAGTAGCGaa                                                                                         <  2:6869372/94‑1 (MQ=255)
  aaGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAAt                                                                                        <  2:1854433/94‑1 (MQ=255)
   aGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCACCAGTAGCGAATc                                                                                       <  2:6641883/94‑1 (MQ=255)
    gCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCt                                                                                      <  2:5818015/94‑1 (MQ=255)
    gCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCt                                                                                      >  2:3098394/1‑94 (MQ=255)
     cGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTa                                                                                     >  2:2580704/1‑94 (MQ=255)
      gATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTAc                                                                                    >  1:6001985/1‑94 (MQ=255)
         cTTTCCGGTTCGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTgg                                                                                 <  2:2260504/94‑1 (MQ=255)
          tttCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGc                                                                                <  2:7146337/94‑1 (MQ=255)
           ttCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGcc                                                                               <  2:2490465/94‑1 (MQ=255)
           ttCCGGTTTGCTGATGCAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGcc                                                                               >  1:9079888/1‑94 (MQ=255)
             ccGGTTTGCTGCTGGAATTACTGCAATGGGGATGCAGAGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCcgc                                                                             >  2:9062587/1‑94 (MQ=255)
             ccGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCcgc                                                                             >  1:5467596/1‑94 (MQ=255)
             ccGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGAGGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCcgc                                                                             <  1:3411497/94‑1 (MQ=255)
              cGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCcgcg                                                                            >  2:1360197/1‑94 (MQ=255)
              cGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCcgcg                                                                            <  2:4617985/94‑1 (MQ=255)
              cGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCcgcg                                                                            >  2:5435428/1‑94 (MQ=255)
               ggTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGa                                                                           <  2:4874612/94‑1 (MQ=255)
                gTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGaa                                                                          <  1:288284/94‑1 (MQ=255)
                   tGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACg                                                                       <  2:9538723/94‑1 (MQ=255)
                   tGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCACCAGTAGCGAATCTACTGGCCGCGAAACg                                                                       <  2:6109537/94‑1 (MQ=255)
                      tGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGGAACGTCt                                                                    >  2:9877169/1‑94 (MQ=255)
                      tGATGGAATTACTGCAATGGGGATGCAGAGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCCAATCTACTCTCCACGAAACGTcg                                                                    >  1:1184616/1‑93 (MQ=255)
                        aTGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGt                                                                  >  2:1016577/1‑94 (MQ=255)
                         tGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGtt                                                                 >  1:3698867/1‑94 (MQ=255)
                          ggAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTa                                                                >  1:9300806/1‑94 (MQ=255)
                          ggAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTa                                                                >  1:7231081/1‑94 (MQ=255)
                           gAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTAc                                                               <  1:10278574/94‑1 (MQ=255)
                           gAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTAc                                                               >  1:6727453/1‑94 (MQ=255)
                            aaTTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACa                                                              >  2:976231/1‑94 (MQ=255)
                             aTTACTGCAATGGGGATGCAGCGATCCGGCTCAAATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACaa                                                             <  2:10234277/94‑1 (MQ=255)
                              ttACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACaaa                                                            <  1:4186549/94‑1 (MQ=255)
                                  tGCAAGGGGGATGCAGCGATCCGGCGCAGATAAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCt                                                        <  1:9231966/94‑1 (MQ=255)
                                    cAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTgg                                                      <  2:6163977/94‑1 (MQ=255)
                                     caTGGGGATGGAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTggg                                                     <  2:6250593/93‑1 (MQ=255)
                                     aaTGGGGATGCGCCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTggg                                                     <  1:9611491/94‑1 (MQ=255)
                                     aaTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTggg                                                     >  1:6822637/1‑94 (MQ=255)
                                     aaTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTggg                                                     >  1:2158316/1‑94 (MQ=255)
                                     aaTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTggg                                                     >  2:10068036/1‑94 (MQ=255)
                                      aTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTgggg                                                    <  2:7827944/94‑1 (MQ=255)
                                      aTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTgggg                                                    <  2:1739915/94‑1 (MQ=255)
                                      aTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTgggg                                                    <  1:8488259/94‑1 (MQ=255)
                                      aTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTgggg                                                    <  1:5263121/94‑1 (MQ=255)
                                             tGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTgg                                             <  2:8830975/94‑1 (MQ=255)
                                             tGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTgg                                             <  2:866434/94‑1 (MQ=255)
                                             tGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTgg                                             >  2:4502422/1‑94 (MQ=255)
                                               cAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAg                                           >  2:3544863/1‑94 (MQ=255)
                                               cAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAg                                           >  1:9774895/1‑94 (MQ=255)
                                               cAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAg                                           <  1:5890592/94‑1 (MQ=255)
                                                aGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAgg                                          <  2:8088108/94‑1 (MQ=255)
                                                aGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAgg                                          >  2:2779748/1‑94 (MQ=255)
                                                  cGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGt                                        <  1:5431898/94‑1 (MQ=255)
                                                   gATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTg                                       >  1:887603/1‑94 (MQ=255)
                                                   gATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTg                                       >  1:4569844/1‑94 (MQ=255)
                                                   gATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTg                                       >  2:4261827/1‑94 (MQ=255)
                                                   gATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTg                                       >  1:7941312/1‑94 (MQ=255)
                                                      ccGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAc                                    <  1:3164491/94‑1 (MQ=255)
                                                      ccGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAc                                    <  1:8377682/94‑1 (MQ=255)
                                                      ccGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAc                                    <  2:3974058/94‑1 (MQ=255)
                                                      ccGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAc                                    >  1:10216971/1‑94 (MQ=255)
                                                       cGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACg                                   <  2:1087777/94‑1 (MQ=255)
                                                       cGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACg                                   <  1:3251296/94‑1 (MQ=255)
                                                       cGGAGCAGATGAGCTGGCTGAATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACg                                   <  2:5967647/94‑1 (MQ=255)
                                                        ggCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACgg                                  <  1:1594146/94‑1 (MQ=255)
                                                        ggCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACgg                                  >  2:3727830/1‑94 (MQ=255)
                                                        ggCGCAGATGAGCTGGCTGGATCAACCGCCAGAAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCCCTGGGGGGAGAACgg                                  >  2:1299636/1‑94 (MQ=255)
                                                         gcgcAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGc                                 <  1:2513730/94‑1 (MQ=255)
                                                         gcgcAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGc                                 <  1:7635777/94‑1 (MQ=255)
                                                           gcAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGGGAACGGCtt                               >  1:1412321/1‑94 (MQ=255)
                                                           ccAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCtt                               <  1:6477811/93‑1 (MQ=255)
                                                            cAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTa                              >  1:8289906/1‑94 (MQ=255)
                                                            cAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTa                              >  1:10016408/1‑94 (MQ=255)
                                                             agagGAGCTGGCTGGAACAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAg                             <  1:8129977/94‑1 (MQ=255)
                                                             aGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAg                             <  1:1921492/94‑1 (MQ=255)
                                                             aGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAg                             <  2:5633528/94‑1 (MQ=255)
                                                              gATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAgg                            >  1:2969915/1‑93 (MQ=255)
                                                                  aGCGGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTgcgc                        <  1:7482486/94‑1 (MQ=255)
                                                                    ctggctggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCaa                      >  1:6375780/1‑94 (MQ=255)
                                                                     tggctggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAg                     >  1:2744087/1‑94 (MQ=255)
                                                                     tggctggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATACTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAg                     >  1:8708778/1‑94 (MQ=255)
                                                                      ggctggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAgg                    <  1:10158093/94‑1 (MQ=255)
                                                                      ggctggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAgg                    >  1:6997911/1‑94 (MQ=255)
                                                                         tggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCa                 >  1:4794265/1‑94 (MQ=255)
                                                                          ggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCaa                <  2:7410043/94‑1 (MQ=255)
                                                                          ggATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCaa                <  1:5558909/94‑1 (MQ=255)
                                                                           gctaaaCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCaaa               <  2:9219921/90‑1 (MQ=255)
                                                                             tCAACCACCAGTAGCGAATCTACTTGCCGCGAAACGTCTGTTACAAATGTTGGGGGCACTGGAGGGTGAACGGCTTAGGGCGCAAGGGCaaaaa             >  2:7340347/1‑94 (MQ=255)
                                                                              cAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGGaaaaaa            >  2:2971872/1‑94 (MQ=255)
                                                                               aaCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAAt           >  2:8309258/1‑94 (MQ=255)
                                                                                aCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATg          >  2:10328580/1‑94 (MQ=255)
                                                                                aCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATg          >  1:5806521/1‑94 (MQ=255)
                                                                                  cGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGc        >  2:7698673/1‑94 (MQ=255)
                                                                                   gCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCa       >  1:4273300/1‑94 (MQ=255)
                                                                                    ccAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAg      <  1:6311794/94‑1 (MQ=255)
                                                                                    ccAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGAGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAg      >  1:5161031/1‑94 (MQ=255)
                                                                                     cAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAgc     <  2:5205143/94‑1 (MQ=255)
                                                                                      agtagcGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGTACGGTTTAGTGCGCAATGGCAAAAAATGGCAgcg    >  2:9406020/1‑94 (MQ=255)
                                                                                      agtagcGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAgcg    >  1:5696136/1‑94 (MQ=255)
                                                                                      agtagcGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAgcg    <  2:7498099/94‑1 (MQ=255)
                                                                                       gtagcGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAgcgc   <  2:6415956/94‑1 (MQ=255)
                                                                                           |                                                                                          
CAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCT  >  NC_000913/163164‑163345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 219 total aligned reads displayed.
TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGG  >  NC_000913/163162‑163348
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TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGC                                                                                               <  SRR4302545.3322708/94‑1 (MQ=60)
TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGC                                                                                               <  SRR4302545.3046291/94‑1 (MQ=60)
TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGC                                                                                               <  SRR4302545.8418336/94‑1 (MQ=60)
TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGC                                                                                               <  SRR4302545.3758415/94‑1 (MQ=60)
TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGC                                                                                               >  SRR4302545.1127295/1‑94 (MQ=60)
TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCACCAGTAGC                                                                                               >  SRR4302545.404691/1‑94 (MQ=60)
 ACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCG                                                                                              <  SRR4302545.3044015/94‑1 (MQ=60)
 ACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCG                                                                                              >  SRR4302545.2292720/1‑94 (MQ=60)
   AAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAA                                                                                            >  SRR4302545.10565289/1‑94 (MQ=60)
   AAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAA                                                                                            >  SRR4302545.10565288/1‑94 (MQ=60)
     AGCGATTTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATC                                                                                          <  SRR4302545.3060504/94‑1 (MQ=60)
     AGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATC                                                                                          >  SRR4302545.8679387/1‑94 (MQ=60)
     AGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATC                                                                                          <  SRR4302545.5373596/94‑1 (MQ=60)
       CGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTA                                                                                        >  SRR4302545.3306396/1‑94 (MQ=60)
        GATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTAC                                                                                       >  SRR4302545.6164002/1‑94 (MQ=60)
        GATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTAC                                                                                       >  SRR4302545.707548/1‑94 (MQ=60)
           CTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGG                                                                                    >  SRR4302545.3538441/1‑94 (MQ=60)
           CTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGG                                                                                    <  SRR4302545.6966890/94‑1 (MQ=60)
           CTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGG                                                                                    >  SRR4302545.9561869/1‑94 (MQ=60)
            TTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGC                                                                                   <  SRR4302545.1506549/94‑1 (MQ=60)
            TTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGC                                                                                   >  SRR4302545.10841315/1‑94 (MQ=60)
             TTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  <  SRR4302545.9012117/94‑1 (MQ=60)
             TTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  >  SRR4302545.1337517/1‑94 (MQ=60)
             TTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  <  SRR4302545.9164571/94‑1 (MQ=60)
             TTCCGGTTTGCTGATGGAATTACAGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  <  SRR4302545.7802108/94‑1 (MQ=60)
             TTCCGGTTTGCTGATGCAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  >  SRR4302545.9345464/1‑94 (MQ=60)
             TTCCGGTTTGCTGATGCAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  >  SRR4302545.9345465/1‑94 (MQ=60)
             TTCCGGTTTGCTGATGAGATTACTCCAGTGGGGATGCAGCAATCCGGCGCAGATGAGCTGCCGGAATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  <  SRR4302545.4062059/94‑1 (MQ=53)
             TCCCGGTTGGCTGATGGAATTACCGCAAGGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCC                                                                                  <  SRR4302545.7802107/94‑1 (MQ=60)
              TCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCG                                                                                 >  SRR4302545.110996/1‑94 (MQ=60)
              TCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCG                                                                                 >  SRR4302545.6169864/1‑94 (MQ=60)
              TCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACCGGCCG                                                                                 >  SRR4302545.8923369/1‑94 (MQ=60)
               CCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGC                                                                                >  SRR4302545.5611032/1‑94 (MQ=60)
               CCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGAGGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGC                                                                                <  SRR4302545.3494759/94‑1 (MQ=60)
                 GGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGA                                                                              >  SRR4302545.3050537/1‑94 (MQ=60)
                  GTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAA                                                                             <  SRR4302545.6273614/94‑1 (MQ=60)
                  GTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAA                                                                             <  SRR4302545.294324/94‑1 (MQ=60)
                  GTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAA                                                                             >  SRR4302545.9512625/1‑94 (MQ=60)
                  GTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAA                                                                             <  SRR4302545.5758138/94‑1 (MQ=60)
                   TTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGcac                                                                            >  SRR4302545.10245927/1‑91 (MQ=60)
                    TTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAcag                                                                           >  SRR4302545.5500701/1‑91 (MQ=60)
                    TTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAAC                                                                           <  SRR4302545.5941183/94‑1 (MQ=60)
                    TTGCTGAGGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAAC                                                                           <  SRR4302545.8434342/94‑1 (MQ=60)
                     TGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACG                                                                          >  SRR4302545.492965/1‑94 (MQ=60)
                      GCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGT                                                                         >  SRR4302545.2941751/1‑94 (MQ=60)
                      GCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGT                                                                         >  SRR4302545.273547/1‑94 (MQ=60)
                       CTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTC                                                                        <  SRR4302545.580172/94‑1 (MQ=60)
                       CTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTC                                                                        >  SRR4302545.7185197/1‑94 (MQ=60)
                        TGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCT                                                                       >  SRR4302545.9289906/1‑94 (MQ=60)
                         GATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTG                                                                      <  SRR4302545.10332316/94‑1 (MQ=60)
                          ATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGT                                                                     >  SRR4302545.10223490/1‑94 (MQ=60)
                          ATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGT                                                                     >  SRR4302545.10509105/1‑94 (MQ=60)
                          ATGGAATTACTGCAATGGGGATGAAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGGCGCGAAACGTCTGT                                                                     >  SRR4302545.10375721/1‑94 (MQ=60)
                           TGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTT                                                                    >  SRR4302545.3789499/1‑94 (MQ=60)
                           GGGAATTACTGCAAGGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTT                                                                    <  SRR4302545.2757434/94‑1 (MQ=60)
                            GGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTA                                                                   <  SRR4302545.4514394/94‑1 (MQ=60)
                            GGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTA                                                                   >  SRR4302545.9573477/1‑94 (MQ=60)
                             GAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTAC                                                                  >  SRR4302545.2991377/1‑94 (MQ=60)
                             GAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTAC                                                                  >  SRR4302545.7389067/1‑94 (MQ=60)
                             GAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTAC                                                                  <  SRR4302545.10581743/94‑1 (MQ=60)
                              AATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACA                                                                 >  SRR4302545.9816169/1‑94 (MQ=60)
                               ATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTCGCCAATCTACTGGCCGCGGAAGGTCTGTTACAA                                                                >  SRR4302545.387827/1‑94 (MQ=60)
                                TTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAA                                                               <  SRR4302545.4291030/94‑1 (MQ=60)
                                TTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAA                                                               <  SRR4302545.7000688/94‑1 (MQ=60)
                                 TACTGCAGGGGGGATGCGGCGATCCGGCGCAGAGGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAAT                                                              <  SRR4302545.5930442/94‑1 (MQ=60)
                                 TACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAAT                                                              <  SRR4302545.7194493/94‑1 (MQ=60)
                                 TACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAAT                                                              <  SRR4302545.8552941/94‑1 (MQ=60)
                                  ACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATG                                                             >  SRR4302545.7780958/1‑94 (MQ=60)
                                    TGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCT                                                           >  SRR4302545.8226148/1‑94 (MQ=60)
                                    TGCAAGGGGGATGCAGCGATCCGGCGCAGATAAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCT                                                           <  SRR4302545.9502639/94‑1 (MQ=60)
                                     GCAGTGGGGATGCAGCGATCCGGCGCAGATGAGCGGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTG                                                          <  SRR4302545.2102368/94‑1 (MQ=60)
                                     GCAATGGGGATGCAGCCATCCGGCGAAGATGAGCTGTCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTG                                                          <  SRR4302545.5625183/94‑1 (MQ=60)
                                      CACTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGGTCAACCGCCAGGAGCGAATCTACTGACCGCGCAACGTCTGTTACAAATGCTGG                                                         >  SRR4302545.7405108/1‑94 (MQ=60)
                                      CAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGG                                                         >  SRR4302545.6067775/1‑94 (MQ=60)
                                      CAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGG                                                         >  SRR4302545.2445571/1‑94 (MQ=60)
                                       agggaGGATGCAGCCATCCGGCGCAGATGACCTGGCTGTATCACCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGG                                                        <  SRR4302545.1049100/89‑1 (MQ=60)
                                       AATGGGGATGCGCCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGG                                                        <  SRR4302545.9894678/94‑1 (MQ=60)
                                       AATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGG                                                        >  SRR4302545.7010117/1‑94 (MQ=60)
                                       AATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGG                                                        >  SRR4302545.7010115/1‑94 (MQ=60)
                                       AATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGG                                                        <  SRR4302545.6539546/94‑1 (MQ=60)
                                       AATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGG                                                        >  SRR4302545.2211099/1‑94 (MQ=60)
                                       AAGGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGG                                                        <  SRR4302545.6539547/94‑1 (MQ=60)
                                        ATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGG                                                       <  SRR4302545.5399183/94‑1 (MQ=60)
                                        ATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGG                                                       <  SRR4302545.8733571/94‑1 (MQ=60)
                                          GGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGC                                                     >  SRR4302545.3279616/1‑94 (MQ=60)
                                           gatATGCAGCGATCCGGCGCAGATGAGCTGGCTAGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCA                                                    <  SRR4302545.5589849/91‑1 (MQ=60)
                                           GGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCA                                                    >  SRR4302545.8736839/1‑94 (MQ=60)
                                            GGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCAC                                                   >  SRR4302545.5850748/1‑94 (MQ=60)
                                            GGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCAC                                                   >  SRR4302545.6118603/1‑94 (MQ=60)
                                             GATTCCGCGAGCCGGCGCAGATGAGGTGGCTGGATCAACCGCGAGTAGCGAATCTACTGGACGCGAAACGTCTGTTACAAATGCTGGGGGCACT                                                  <  SRR4302545.4415358/94‑1 (MQ=60)
                                             GATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACT                                                  >  SRR4302545.6550833/1‑94 (MQ=60)
                                             GATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACT                                                  <  SRR4302545.3204302/94‑1 (MQ=60)
                                             GATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACT                                                  >  SRR4302545.1791306/1‑94 (MQ=60)
                                             GATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACT                                                  <  SRR4302545.5613864/94‑1 (MQ=60)
                                             GATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGAACT                                                  >  SRR4302545.6550834/1‑94 (MQ=60)
                                              gtgaagcgagcgGGCGCAGATGAGCTGGCTGGATCAAGCGCCAGTAGCGAATCCACTGGCGGCGAAACGTCTGTTACAAATGCTGGGGGCACTG                                                 <  SRR4302545.2943689/82‑1 (MQ=60)
                                              ATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTG                                                 >  SRR4302545.2889258/1‑94 (MQ=60)
                                               TGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGG                                                <  SRR4302545.10045994/94‑1 (MQ=60)
                                                GCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGA                                               <  SRR4302545.8705558/94‑1 (MQ=60)
                                                 CAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAG                                              <  SRR4302545.6049367/94‑1 (MQ=60)
                                                 CAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAG                                              >  SRR4302545.10065585/1‑94 (MQ=60)
                                                 CAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAG                                              >  SRR4302545.3358567/1‑94 (MQ=60)
                                                  AGCGCTCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGATGGGGGCACTGGAGG                                             >  SRR4302545.1557843/1‑94 (MQ=60)
                                                  AGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGG                                             <  SRR4302545.5270009/94‑1 (MQ=60)
                                                  AGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGG                                             <  SRR4302545.9007910/94‑1 (MQ=60)
                                                    CGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGT                                           <  SRR4302545.352452/94‑1 (MQ=60)
                                                    CGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGT                                           <  SRR4302545.5573951/94‑1 (MQ=60)
                                                    CGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGG                                           >  SRR4302545.10251999/1‑94 (MQ=60)
                                                    CGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGC                                           >  SRR4302545.3036370/1‑94 (MQ=60)
                                                     GATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTG                                          >  SRR4302545.8166930/1‑94 (MQ=60)
                                                     GATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTG                                          >  SRR4302545.3970397/1‑94 (MQ=60)
                                                     GATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTG                                          >  SRR4302545.4791021/1‑94 (MQ=60)
                                                     GATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTG                                          >  SRR4302545.4687024/1‑94 (MQ=60)
                                                     GATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTG                                          >  SRR4302545.907508/1‑94 (MQ=60)
                                                      ATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGA                                         <  SRR4302545.8504034/94‑1 (MQ=60)
                                                      ATCCGGCGCAGATAAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGA                                         <  SRR4302545.8304878/94‑1 (MQ=60)
                                                        CCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAC                                       <  SRR4302545.7624625/94‑1 (MQ=60)
                                                        CCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAC                                       >  SRR4302545.10518724/1‑94 (MQ=60)
                                                        CCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAC                                       <  SRR4302545.3242241/94‑1 (MQ=60)
                                                        CCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAAC                                       <  SRR4302545.8620236/94‑1 (MQ=60)
                                                         CGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACG                                      <  SRR4302545.3331103/94‑1 (MQ=60)
                                                          GGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGG                                     >  SRR4302545.10502006/1‑94 (MQ=60)
                                                          GGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGG                                     >  SRR4302545.3277271/1‑94 (MQ=60)
                                                          GGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGG                                     <  SRR4302545.1631887/94‑1 (MQ=60)
                                                           GCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGC                                    <  SRR4302545.7851867/94‑1 (MQ=60)
                                                           GCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGC                                    <  SRR4302545.2574488/94‑1 (MQ=60)
                                                            CGCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCT                                   >  SRR4302545.7990837/1‑94 (MQ=60)
                                                            CGCAGAGGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCT                                   <  SRR4302545.8303440/94‑1 (MQ=60)
                                                             GCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTT                                  <  SRR4302545.4479265/94‑1 (MQ=60)
                                                             GCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGGGAACGGCTT                                  >  SRR4302545.1444223/1‑94 (MQ=60)
                                                             CCAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTT                                  <  SRR4302545.6654908/94‑1 (MQ=60)
                                                              GAGATGAGCTGGCTGCATCAACCACCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGTGGCACTGGAGGGTGAACGGCTTA                                 <  SRR4302545.6744190/94‑1 (MQ=60)
                                                              CAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTA                                 <  SRR4302545.5610482/94‑1 (MQ=60)
                                                              CAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTA                                 >  SRR4302545.8530049/1‑94 (MQ=60)
                                                              CAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTA                                 >  SRR4302545.10313293/1‑94 (MQ=60)
                                                              CAGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTA                                 <  SRR4302545.2453949/94‑1 (MQ=60)
                                                               AGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAG                                >  SRR4302545.8621587/1‑94 (MQ=60)
                                                               AGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAG                                <  SRR4302545.1968987/94‑1 (MQ=60)
                                                               AGATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAG                                >  SRR4302545.5200058/1‑94 (MQ=60)
                                                               AGATGAGCTGCCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAG                                <  SRR4302545.1296101/94‑1 (MQ=60)
                                                               AGAGGAGCTGGCTGGAACAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAG                                <  SRR4302545.8364784/94‑1 (MQ=60)
                                                               AGAGGAGCTGGCGGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAG                                <  SRR4302545.10056790/94‑1 (MQ=60)
                                                                 ATGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTG                              >  SRR4302545.6620831/1‑94 (MQ=60)
                                                                  TGAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGC                             <  SRR4302545.7931183/94‑1 (MQ=60)
                                                                   GAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGTG                            >  SRR4302545.9057811/1‑94 (MQ=60)
                                                                   GAGCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCG                            <  SRR4302545.3356086/94‑1 (MQ=60)
                                                                    AGCGGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGC                           <  SRR4302545.7694255/94‑1 (MQ=60)
                                                                     GCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCA                          <  SRR4302545.9328980/94‑1 (MQ=60)
                                                                     GCTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCA                          >  SRR4302545.8557691/1‑94 (MQ=60)
                                                                      CTGGCTGGATCACCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAA                         <  SRR4302545.4784525/94‑1 (MQ=60)
                                                                      CTGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAA                         >  SRR4302545.6550071/1‑94 (MQ=60)
                                                                       TGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAG                        <  SRR4302545.2666024/94‑1 (MQ=60)
                                                                       TGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAG                        >  SRR4302545.2810277/1‑94 (MQ=60)
                                                                       TGGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATACTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAG                        >  SRR4302545.8961435/1‑94 (MQ=60)
                                                                        GGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGG                       <  SRR4302545.10458425/94‑1 (MQ=60)
                                                                        GGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGG                       >  SRR4302545.7190958/1‑94 (MQ=60)
                                                                        GGCTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGGGAACGGCTTAGTGCGCAAGG                       >  SRR4302545.7717102/1‑94 (MQ=60)
                                                                        GGCGGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGG                       <  SRR4302545.3551465/94‑1 (MQ=60)
                                                                        GGCGGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGG                       <  SRR4302545.5379479/94‑1 (MQ=60)
                                                                          CTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGC                     <  SRR4302545.7498420/94‑1 (MQ=60)
                                                                          CTGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGC                     >  SRR4302545.5492049/1‑94 (MQ=60)
                                                                           TGGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCA                    >  SRR4302545.4916860/1‑94 (MQ=60)
                                                                            GGATCACCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAA                   <  SRR4302545.6035456/94‑1 (MQ=60)
                                                                            GGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAA                   >  SRR4302545.2100239/1‑94 (MQ=60)
                                                                            GGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAA                   <  SRR4302545.5705947/94‑1 (MQ=60)
                                                                            GGATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAA                   <  SRR4302545.6035455/94‑1 (MQ=60)
                                                                             GACCACCCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAA                  <  SRR4302545.9133/94‑1 (MQ=60)
                                                                              ATCAACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAA                 <  SRR4302545.5465677/94‑1 (MQ=60)
                                                                                 AAGCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAAT              >  SRR4302545.7568549/1‑94 (MQ=60)
                                                                                 AACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAAT              <  SRR4302545.9462775/94‑1 (MQ=60)
                                                                                 AACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAAT              <  SRR4302545.4865743/94‑1 (MQ=60)
                                                                                  ACCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATG             <  SRR4302545.581487/94‑1 (MQ=60)
                                                                                  ACCACCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATG             >  SRR4302545.1370787/1‑94 (MQ=60)
                                                                                   CTGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGTGTAAGGGCAAAAAATGG            >  SRR4302545.9674225/1‑94 (MQ=60)
                                                                                   CCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGG            >  SRR4302545.2559305/1‑94 (MQ=60)
                                                                                   CCGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGG            <  SRR4302545.9591944/94‑1 (MQ=60)
                                                                                    CGCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGC           >  SRR4302545.6973657/1‑94 (MQ=60)
                                                                                    CGCCAGTAGCGAATCTACTGGCCGCGAAACGGCTGTTATTAATGCTGGGGGCCCTTGAGGGAGAACGGCTTAGATCGCAAGGGCAAAAAATGGT           >  SRR4302545.9594152/1‑94 (MQ=50)
                                                                                     GCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCA          <  SRR4302545.4345763/94‑1 (MQ=60)
                                                                                     GCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCA          >  SRR4302545.4380609/1‑94 (MQ=60)
                                                                                     GCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCA          >  SRR4302545.5333553/1‑94 (MQ=60)
                                                                                     GCCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCA          >  SRR4302545.684047/1‑94 (MQ=60)
                                                                                      CCAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAG         <  SRR4302545.6483877/94‑1 (MQ=60)
                                                                                      CAAGTAGCGAATCTCCTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAG         <  SRR4302545.4147139/94‑1 (MQ=60)
                                                                                       CAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGC        <  SRR4302545.1775749/94‑1 (MQ=60)
                                                                                       CAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGC        >  SRR4302545.6907938/1‑94 (MQ=60)
                                                                                       CAGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGGGCGCAAGGGCAAAAAATGGCAGC        >  SRR4302545.5997399/1‑94 (MQ=60)
                                                                                        AGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCG       >  SRR4302545.428837/1‑94 (MQ=60)
                                                                                        AGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCG       >  SRR4302545.10507211/1‑94 (MQ=60)
                                                                                        AGTAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCG       >  SRR4302545.5848638/1‑94 (MQ=60)
                                                                                          TAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCT     <  SRR4302545.2124953/94‑1 (MQ=60)
                                                                                          TAGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCT     <  SRR4302545.6154366/94‑1 (MQ=60)
                                                                                           AGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTG    >  SRR4302545.1325839/1‑94 (MQ=60)
                                                                                           AGCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTG    >  SRR4302545.10209006/1‑94 (MQ=60)
                                                                                            GCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGG   <  SRR4302545.2580697/94‑1 (MQ=60)
                                                                                            GCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGG   >  SRR4302545.4077073/1‑94 (MQ=60)
                                                                                            GCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGG   <  SRR4302545.5119107/94‑1 (MQ=60)
                                                                                            GCGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGCGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGG   <  SRR4302545.5119108/94‑1 (MQ=60)
                                                                                            GCGAATCTACTGGCCGCGAAACGTCTGTGACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGG   <  SRR4302545.8090369/94‑1 (MQ=60)
                                                                                             CGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGG  >  SRR4302545.7719931/1‑94 (MQ=60)
                                                                                             |                                                                                             
TACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGG  >  NC_000913/163162‑163348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: