Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,963,151 |
A→G |
A355A (GCT→GCC) |
flhB ← |
FlhB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,963,151 | 0 | A | G | 98.7%
| 498.3
/ ‑2.8
| 150 | A355A (GCT→GCC) | flhB | FlhB |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (71/77); total (73/77) |
| Fisher's exact test for biased strand distribution p-value = 2.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.72e-01 |
Only 100 of 167 total aligned reads displayed.
GGCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCAGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTCC > NC_000913/1963060‑1963241
|
ggCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTTTCCAccggc > 1:6698106/1‑94 (MQ=255)
ggCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCTAccggc > 2:2438437/1‑94 (MQ=255)
ggCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCAccggc > 2:3642160/1‑94 (MQ=255)
gCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCAccggcc > 2:3210005/1‑94 (MQ=255)
ccAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCAccggcca < 1:5547119/94‑1 (MQ=255)
cAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCAccggccag < 1:7635894/94‑1 (MQ=255)
aGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCAccggccagc > 2:7573651/1‑93 (MQ=255)
aGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGa < 2:1278999/94‑1 (MQ=255)
aGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGa > 2:6984570/1‑94 (MQ=255)
gATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGAc < 2:2962933/94‑1 (MQ=255)
aTTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACg < 1:6949742/94‑1 (MQ=255)
aTTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACg > 1:5050009/1‑94 (MQ=255)
aTTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACg < 2:3197583/94‑1 (MQ=255)
tACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGcc < 2:6647369/94‑1 (MQ=255)
tACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGcc > 2:5313222/1‑94 (MQ=255)
tACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGcc < 2:1197051/94‑1 (MQ=255)
cTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAg < 2:8066296/94‑1 (MQ=255)
tCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGc > 1:8065849/1‑94 (MQ=255)
cATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCg > 1:2151729/1‑94 (MQ=255)
ggTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTc > 1:4515149/1‑94 (MQ=255)
tCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAg < 2:8389425/94‑1 (MQ=255)
tCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAg < 1:6450323/94‑1 (MQ=255)
cGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGt < 1:9804470/94‑1 (MQ=255)
gTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTg > 2:59594/1‑94 (MQ=255)
ttCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGcc > 1:358980/1‑94 (MQ=255)
ttCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGcc > 2:877890/1‑94 (MQ=255)
tctcGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCa > 2:8269272/1‑94 (MQ=255)
ctcGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAg < 1:3477138/94‑1 (MQ=255)
tcGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGa < 2:10500856/94‑1 (MQ=255)
tcGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGa < 2:3235147/94‑1 (MQ=255)
cGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCAAGAc > 2:3670794/1‑94 (MQ=255)
gTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGAcc > 2:9185243/1‑94 (MQ=255)
gTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGAcc < 2:10627694/94‑1 (MQ=255)
gTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGAcc < 2:6710408/94‑1 (MQ=255)
cgtaataaAATCCAGGGCTTCCGGCATCGGCAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGAcc < 2:8991011/92‑1 (MQ=255)
ttAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGAccc < 1:1009795/94‑1 (MQ=255)
ttAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGAccc > 1:10299842/1‑94 (MQ=255)
taataaAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCa > 1:263116/1‑94 (MQ=255)
aataaAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAg > 2:1786484/1‑94 (MQ=255)
ataaAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAgg > 1:2675759/1‑94 (MQ=255)
aaaaTCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGcc < 2:3038027/94‑1 (MQ=255)
aaaaTCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGcc > 2:5003603/1‑94 (MQ=255)
aaaTCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCa > 1:948817/1‑94 (MQ=255)
aTCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGc > 2:4565907/1‑94 (MQ=255)
tCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCa > 1:378559/1‑94 (MQ=255)
ccAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCAc > 2:5430133/1‑94 (MQ=255)
ccAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCAc < 2:9183486/94‑1 (MQ=255)
cAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACt < 1:5143788/94‑1 (MQ=255)
aGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACtt > 1:2814594/1‑94 (MQ=255)
gggCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTc < 1:9241511/94‑1 (MQ=255)
ggCTTCGGGCACCGGAATATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTcc < 1:9314202/94‑1 (MQ=255)
gCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCg > 1:7400885/1‑94 (MQ=255)
gCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCg < 1:9035884/94‑1 (MQ=255)
cTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGTCCCAGGCCAGCACTTCCGc > 2:5357610/1‑94 (MQ=255)
cTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGc > 1:1047680/1‑94 (MQ=255)
ttCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGcc > 1:9772771/1‑94 (MQ=255)
ttCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGcc > 1:8035465/1‑94 (MQ=255)
ccGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCAc > 2:1548088/1‑94 (MQ=255)
cGGCGCCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCAcc < 1:6082217/94‑1 (MQ=255)
cGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCAcc < 1:10299234/94‑1 (MQ=255)
gCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACcgc < 1:1585123/94‑1 (MQ=255)
cACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACcgcg > 1:6865690/1‑94 (MQ=255)
aCCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCgcgg < 2:6110752/94‑1 (MQ=255)
aCCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCgcgg > 1:305197/1‑94 (MQ=255)
aCCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCgcgg < 1:8912139/94‑1 (MQ=255)
aCCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACAgcgg > 1:5112364/1‑94 (MQ=255)
ccGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCgcggc > 1:5911779/1‑94 (MQ=255)
ggAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGt > 2:5797181/1‑94 (MQ=255)
aGATGAGTAGGTTGTACAGGGCGCCGTCCACCGGCCCGCCGCCAGCGTTTCAGTTGCCAGACCCCGGCCAGCACTTCCGCCGCCGCGGCGTACa < 2:8170591/94‑1 (MQ=255)
gATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAg < 2:3071251/94‑1 (MQ=255)
gATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAg < 1:3589697/94‑1 (MQ=255)
aTGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGt > 2:7650860/1‑94 (MQ=255)
tGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGtt > 2:8063979/1‑94 (MQ=255)
tGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGtt > 1:9054062/1‑94 (MQ=255)
tGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGtt < 1:10222443/94‑1 (MQ=255)
tGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGtt > 1:3147073/1‑94 (MQ=255)
agAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGtt < 2:6874842/93‑1 (MQ=255)
gAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTg < 1:753523/94‑1 (MQ=255)
tAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGAcc < 1:1662292/94‑1 (MQ=255)
aGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGAccc < 1:4923806/94‑1 (MQ=255)
ggTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCg > 2:10086578/1‑94 (MQ=255)
ggTCGTACAGGGCGCTGTCCACCGGCCAGGCGCCAGCGTTTCAGTTGGCAGACCCAGGCCAGCACTTCCGCCCCCGCGGCGTACAGTTGACCCg < 2:3209257/94‑1 (MQ=255)
gtggTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCgg < 1:8191461/91‑1 (MQ=255)
ttGTACAGGGCGCTGTAAACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCggg < 2:9402687/94‑1 (MQ=255)
gTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGAt < 1:10085340/94‑1 (MQ=255)
cAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttg > 2:2542937/1‑94 (MQ=255)
cAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttg < 2:8649379/94‑1 (MQ=255)
cAGGGCGCTGTCCACCAGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttg > 2:8954208/1‑94 (MQ=255)
aGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttgt > 2:1358752/1‑94 (MQ=255)
aGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttgt > 1:6355332/1‑94 (MQ=255)
aGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttgt > 1:5660671/1‑94 (MQ=255)
gggCGCGGTCCTCCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttgtt < 1:594751/94‑1 (MQ=255)
ggCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATttgttg < 2:2527108/94‑1 (MQ=255)
cgcTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGAc > 2:4769354/1‑94 (MQ=255)
cgcTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGAc > 1:522787/1‑94 (MQ=255)
cTGTCCTACGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCa < 2:1690846/94‑1 (MQ=255)
tGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCaa > 1:4787099/1‑94 (MQ=255)
tCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAAtc > 2:4103577/1‑94 (MQ=255)
caccgGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTTACTCGGGATTTGTTGACCAAtctc > 1:4884352/1‑94 (MQ=255)
caccgGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAAtctc > 2:9524225/1‑94 (MQ=255)
|
GGCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCAGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTCC > NC_000913/1963060‑1963241
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGGCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCAGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTCCGCA > NC_000913/1963058‑1963244
|
GCGGCCAGATTACTCATGGGTCGTTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCG < SRR4302545.7455247/94‑1 (MQ=60)
CGGCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGG < SRR4302545.9020114/94‑1 (MQ=60)
CGGCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGG > SRR4302545.5009187/1‑94 (MQ=60)
GGCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTTTCCACCGGC > SRR4302545.6881746/1‑94 (MQ=60)
CCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCA < SRR4302545.5693650/94‑1 (MQ=60)
CAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAG < SRR4302545.7851987/94‑1 (MQ=60)
ATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACG < SRR4302545.7141342/94‑1 (MQ=60)
ATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACG > SRR4302545.5178399/1‑94 (MQ=60)
acgctgGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTCCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCA < SRR4302545.4049436/88‑1 (MQ=60)
TCTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCA < SRR4302545.8062939/94‑1 (MQ=60)
CTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAG < SRR4302545.2952188/94‑1 (MQ=60)
TCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGC > SRR4302545.8296720/1‑94 (MQ=60)
CATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCG < SRR4302545.9975050/94‑1 (MQ=60)
CATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCG > SRR4302545.2204369/1‑94 (MQ=60)
CATGGGTCGATTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCG < SRR4302545.6548565/94‑1 (MQ=60)
ATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGT > SRR4302545.2819656/1‑94 (MQ=60)
GGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTT < SRR4302545.9485150/94‑1 (MQ=60)
GGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTC > SRR4302545.4630750/1‑94 (MQ=60)
GGTCGGTTTCTCGTTAATAAAATCCAGGACTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTC < SRR4302545.7312113/94‑1 (MQ=60)
GTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCA > SRR4302545.10851776/1‑94 (MQ=60)
GTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCA < SRR4302545.3613092/94‑1 (MQ=60)
TCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAG < SRR4302545.6626664/94‑1 (MQ=60)
CGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGT < SRR4302545.10095785/94‑1 (MQ=60)
GTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTG < SRR4302545.5012450/94‑1 (MQ=60)
tttagCGTTAATAAAAGCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGC < SRR4302545.8859264/89‑1 (MQ=60)
TTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCAACGGCCAGACGCCAGCGTTTCAGTTGC > SRR4302545.5787446/1‑94 (MQ=60)
TTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCC > SRR4302545.366770/1‑94 (MQ=60)
CTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAG < SRR4302545.3562357/94‑1 (MQ=60)
CTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAG > SRR4302545.2527330/1‑94 (MQ=60)
GTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACC > SRR4302545.6642842/1‑94 (MQ=60)
TTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCC > SRR4302545.10603600/1‑94 (MQ=60)
TTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCC < SRR4302545.1032117/94‑1 (MQ=60)
TAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCA > SRR4302545.268546/1‑94 (MQ=60)
ATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGG < SRR4302545.5464934/94‑1 (MQ=60)
ATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGG > SRR4302545.2740227/1‑94 (MQ=60)
TAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGC > SRR4302545.5265274/1‑94 (MQ=60)
AAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCA > SRR4302545.970114/1‑94 (MQ=60)
TCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCA > SRR4302545.386935/1‑94 (MQ=60)
CAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACT < SRR4302545.5275937/94‑1 (MQ=60)
AGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTT > SRR4302545.2882730/1‑94 (MQ=60)
GGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTC < SRR4302545.9512467/94‑1 (MQ=60)
GGCTTCGGGCACCGGAATATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCC < SRR4302545.9587277/94‑1 (MQ=60)
GCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCG > SRR4302545.7609866/1‑94 (MQ=60)
GCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCG < SRR4302545.9299251/94‑1 (MQ=60)
CTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGC > SRR4302545.1070505/1‑94 (MQ=60)
TTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCC > SRR4302545.8264507/1‑94 (MQ=60)
TTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCC > SRR4302545.10063417/1‑94 (MQ=60)
CGGCGCCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACC < SRR4302545.6247414/94‑1 (MQ=60)
CGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACC < SRR4302545.10602974/94‑1 (MQ=60)
CGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACC < SRR4302545.10602975/94‑1 (MQ=60)
GCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGC < SRR4302545.1622567/94‑1 (MQ=60)
GCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGC < SRR4302545.9732887/94‑1 (MQ=60)
CACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCG > SRR4302545.7054350/1‑94 (MQ=60)
CACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCAGCCACCGCG > SRR4302545.4994098/1‑94 (MQ=60)
ACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGG > SRR4302545.311643/1‑94 (MQ=60)
ACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGG < SRR4302545.9171230/94‑1 (MQ=60)
ACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGG > SRR4302545.5243251/1‑94 (MQ=60)
ACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACAGCGG > SRR4302545.5243252/1‑94 (MQ=60)
CCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGC > SRR4302545.6071220/1‑94 (MQ=60)
CCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGC > SRR4302545.6071219/1‑94 (MQ=60)
AAGATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTAC < SRR4302545.7107410/94‑1 (MQ=60)
GATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAG > SRR4302545.3369457/1‑94 (MQ=60)
GATGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAG < SRR4302545.3677294/94‑1 (MQ=60)
TGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTT < SRR4302545.10524353/94‑1 (MQ=60)
TGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTT > SRR4302545.3224564/1‑94 (MQ=60)
TGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTT < SRR4302545.10524354/94‑1 (MQ=60)
TGAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTT > SRR4302545.9318328/1‑94 (MQ=60)
GAGTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTG < SRR4302545.770463/94‑1 (MQ=60)
GTAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGAC > SRR4302545.10605090/1‑94 (MQ=60)
TAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACC > SRR4302545.4600559/1‑94 (MQ=60)
TAGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACC < SRR4302545.1701620/94‑1 (MQ=60)
AGGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCC < SRR4302545.5048700/94‑1 (MQ=60)
GGTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCG > SRR4302545.8616753/1‑94 (MQ=60)
GTTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGG < SRR4302545.8428539/94‑1 (MQ=60)
GTGGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGG < SRR4302545.8428540/94‑1 (MQ=60)
TTGTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGG < SRR4302545.1917384/94‑1 (MQ=60)
GTACAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGAT < SRR4302545.10383635/94‑1 (MQ=60)
TCAGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCAACCGCGGCGTACAGTTGACCCGGGATTT < SRR4302545.3736788/94‑1 (MQ=60)
AGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGT > SRR4302545.5811653/1‑94 (MQ=60)
AGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGT > SRR4302545.6528955/1‑94 (MQ=60)
AGGGCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGT > SRR4302545.6213664/1‑94 (MQ=60)
GGGCGCGGTCCTCCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTT < SRR4302545.608168/94‑1 (MQ=60)
GCGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGAATTGTTGA < SRR4302545.7773629/94‑1 (MQ=60)
CGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGAC > SRR4302545.534466/1‑94 (MQ=60)
CGCTGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGAC > SRR4302545.9312214/1‑94 (MQ=60)
TTTCCACCGGCCAGACGCCAGCGTTTCAGTTTCCAGGCCCAGGCCATCACTTTCGCCACCGCGGCTTACATGTGGCCCGGGATTTGTTGgccga > SRR4302545.6237441/1‑89 (MQ=40)
TGTCCACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAA > SRR4302545.4909497/1‑94 (MQ=60)
CACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTTACTCGGGATTTGTTGACCAATCTC > SRR4302545.5008478/1‑94 (MQ=60)
CACCGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTC < SRR4302545.10151389/94‑1 (MQ=60)
CGGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTCCGC < SRR4302545.1060299/94‑1 (MQ=60)
CGGCCAGACGCCAGCGTTTCAGTAGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTCCGC < SRR4302545.7457921/94‑1 (MQ=60)
GGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTTACCCGGGATTTGTTGACCAATCTCCGCA > SRR4302545.2725921/1‑94 (MQ=60)
GGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTCCGCA < SRR4302545.10923898/94‑1 (MQ=60)
|
GCGGCCAGATTACTCATGGGTCGGTTTCTCGTTAATAAAATCCAGGGCTTCCGGCACCGGAAGATGAGTAGGTTGTACAGGGCGCTGTCCACCAGCCAGACGCCAGCGTTTCAGTTGCCAGACCCAGGCCAGCACTTCCGCCACCGCGGCGTACAGTTGACCCGGGATTTGTTGACCAATCTCCGCA > NC_000913/1963058‑1963244
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
