Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,072,030 T→A C824S (TGC→AGC)  b2000 → outer membrane fluffing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,072,0300TA100.0% 635.7 / NA 169C824S (TGC→AGC) b2000outer membrane fluffing protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (88/81);  total (88/81)

Only 100 of 188 total aligned reads displayed.

CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGT  >  NC_000913/2071939‑2072120
                                                                                           |                                                                                          
cgcgGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGc                                                                                          >  2:6739008/1‑94 (MQ=255)
  cgGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCt                                                                                        <  1:648612/94‑1 (MQ=255)
   gggggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTg                                                                                       >  2:5180353/1‑94 (MQ=255)
    ggggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCtcg                                                                                      >  1:397130/1‑92 (MQ=255)
     gggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGccggcg                                                                                     >  1:8267005/1‑90 (MQ=255)
     gggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTggg                                                                                     <  2:8615085/94‑1 (MQ=255)
     gggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTggg                                                                                     <  1:257944/94‑1 (MQ=255)
     gggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTggg                                                                                     >  2:6365569/1‑94 (MQ=255)
     gggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTggg                                                                                     <  1:5337089/94‑1 (MQ=255)
      ggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGc                                                                                    >  2:4256351/1‑94 (MQ=255)
       gTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCg                                                                                   >  1:9524395/1‑94 (MQ=255)
         atatGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGa                                                                                 >  2:580761/1‑94 (MQ=255)
         atatGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGa                                                                                 <  1:6366206/94‑1 (MQ=255)
          tatGGTGCTGCTGGCCATTCTTCCGTTTATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGAt                                                                                <  2:1093484/94‑1 (MQ=255)
            tGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAc                                                                              >  1:4897368/1‑94 (MQ=255)
             ggTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAcc                                                                             <  2:878439/94‑1 (MQ=255)
              gTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCt                                                                            >  1:645059/1‑94 (MQ=255)
              gTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCt                                                                            >  2:9482188/1‑94 (MQ=255)
               tgctgcTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTg                                                                           >  1:1748906/1‑94 (MQ=255)
                 ctgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGaa                                                                         <  2:2244256/94‑1 (MQ=255)
                  tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAAt                                                                        >  1:2100166/1‑94 (MQ=255)
                  cgctgGCCATTCTTCCGTTTATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAAt                                                                        <  1:2959352/93‑1 (MQ=255)
                   tctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATc                                                                       <  1:4266670/93‑1 (MQ=255)
                   gctgGCTTTTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATc                                                                       <  2:6041224/94‑1 (MQ=255)
                    ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCt                                                                      >  2:8036778/1‑94 (MQ=255)
                     ttgCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg                                                                     <  2:6794402/92‑1 (MQ=255)
                     tgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg                                                                     >  2:479319/1‑94 (MQ=255)
                      ggCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTgg                                                                    >  1:1049023/1‑94 (MQ=255)
                      ggCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTgg                                                                    <  1:4748487/94‑1 (MQ=255)
                      ggCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGGCCGGGATGATGCCGGCAGTCTGGGCGGATACCTGAATCTgg                                                                    >  2:1165385/1‑94 (MQ=255)
                         cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTac                                                                 <  1:5311071/94‑1 (MQ=255)
                          aTTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTaca                                                                <  2:3791681/94‑1 (MQ=255)
                          aTTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTaca                                                                >  2:453287/1‑94 (MQ=255)
                           ttcttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacac                                                               <  1:3780292/94‑1 (MQ=255)
                           ttcttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacac                                                               >  2:8596932/1‑94 (MQ=255)
                             cttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac                                                             >  2:8897336/1‑94 (MQ=255)
                             cttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac                                                             >  1:156264/1‑94 (MQ=255)
                             cttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac                                                             >  1:3355474/1‑94 (MQ=255)
                             cttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac                                                             >  1:5246492/1‑94 (MQ=255)
                               tcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGt                                                           >  2:5919780/1‑94 (MQ=255)
                                 cGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc                                                         >  2:2533120/1‑94 (MQ=255)
                                 cGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc                                                         >  1:9175555/1‑94 (MQ=255)
                                 cGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc                                                         >  2:1546501/1‑94 (MQ=255)
                                  gTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcct                                                        >  1:6785896/1‑94 (MQ=255)
                                   ttGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGAGGATACCTGAATCTGGTACACACGtcctc                                                       >  2:6996141/1‑94 (MQ=255)
                                    tGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGGCTGGGCGGTTACCTGAATCTGGTACACACGtcctcc                                                      >  1:7851496/1‑94 (MQ=255)
                                     gATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCg                                                     <  2:2100166/94‑1 (MQ=255)
                                        gTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGcc                                                  <  1:2331335/94‑1 (MQ=255)
                                           aaGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgt                                               <  1:876932/94‑1 (MQ=255)
                                           aaGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgt                                               <  1:3468193/94‑1 (MQ=255)
                                             ggATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTgg                                             <  2:5934188/94‑1 (MQ=255)
                                             ggATGATGACGGCGCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTgg                                             <  1:10198842/94‑1 (MQ=255)
                                              gatgatGACGGTTCCCGTGCGGGCAGGGGCGGGGATGATGCCGACAGCCTGGGAGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg                                            <  1:7298512/94‑1 (MQ=255)
                                                tgatgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCCGCCTGTGGGCt                                          >  2:4053205/1‑94 (MQ=255)
                                                tgatgaCGCCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCt                                          <  1:2128619/94‑1 (MQ=255)
                                                 gatgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTg                                         <  2:8196213/94‑1 (MQ=255)
                                                 gatgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTg                                         >  2:7948165/1‑94 (MQ=255)
                                                   tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAc                                       >  1:5917346/1‑94 (MQ=255)
                                                   tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAc                                       >  2:3934906/1‑94 (MQ=255)
                                                     aCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAt                                     >  2:2434910/1‑94 (MQ=255)
                                                      cGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGACACCTGAATCTGGTACACACGTACTCCGGCCTGTGGGCTGACAtt                                    >  2:1682586/1‑94 (MQ=255)
                                                       ggCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtg                                   >  1:8564590/1‑94 (MQ=255)
                                                        gCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgt                                  >  1:7735246/1‑94 (MQ=255)
                                                          tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTgg                                >  1:9795079/1‑94 (MQ=255)
                                                           cccGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGc                               >  2:2137423/1‑94 (MQ=255)
                                                             cGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcac                             <  2:4147517/94‑1 (MQ=255)
                                                             cGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcac                             <  2:1165944/94‑1 (MQ=255)
                                                             cGTGCCGGCACGGTCCGGGAGGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcac                             <  2:3054496/94‑1 (MQ=255)
                                                              gTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGGGGcaca                            >  2:2506477/1‑94 (MQ=255)
                                                               tGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGGGGCACAg                           >  2:3318640/1‑94 (MQ=255)
                                                                gCCGGCACGGTCAGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg                          <  2:7797308/94‑1 (MQ=255)
                                                                 ccGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAggg                         <  2:797553/94‑1 (MQ=255)
                                                                 ccGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAggg                         <  1:9917997/94‑1 (MQ=255)
                                                                  cagCACGGTCCGGGATGATGCCTGCAGCCTGGGAGGATACCTGCATCTGGTACACCCGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGa                        <  1:8086923/92‑1 (MQ=255)
                                                                  cGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGTTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGa                        >  2:6961195/1‑94 (MQ=255)
                                                                  cGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGa                        <  1:7483052/94‑1 (MQ=255)
                                                                    gCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAc                      >  1:10417327/1‑94 (MQ=255)
                                                                    gCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAc                      <  2:7641896/94‑1 (MQ=255)
                                                                     cACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAcc                     >  2:4855030/1‑94 (MQ=255)
                                                                      aCGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAccc                    >  2:9322820/1‑94 (MQ=255)
                                                                       cGGTCCGGGATGATGCCGGCATCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCg                   <  1:2158625/94‑1 (MQ=255)
                                                                         gTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGcc                 <  2:8375950/94‑1 (MQ=255)
                                                                            cGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACCTTGTGGCACAGGGAACCCGCcaca              >  1:4664107/1‑94 (MQ=255)
                                                                            cGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCcaca              >  2:7390310/1‑94 (MQ=255)
                                                                            cGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCcaca              >  1:843110/1‑94 (MQ=255)
                                                                             gggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAg             >  1:9500395/1‑94 (MQ=255)
                                                                              ggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGc            >  2:611836/1‑94 (MQ=255)
                                                                              gaatgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGc            <  2:4181587/92‑1 (MQ=255)
                                                                                atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt          <  1:3510413/94‑1 (MQ=255)
                                                                                atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt          >  2:734738/1‑94 (MQ=255)
                                                                                atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt          >  1:5762022/1‑94 (MQ=255)
                                                                                atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt          <  1:734738/94‑1 (MQ=255)
                                                                                 tgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTTGGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATg         <  2:5411405/94‑1 (MQ=255)
                                                                                  gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCCCAGCATGa        >  1:8490218/1‑94 (MQ=255)
                                                                                  gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGa        >  1:2561411/1‑94 (MQ=255)
                                                                                  gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGa        >  2:9579448/1‑94 (MQ=255)
                                                                                    tgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGaaa      >  1:2727588/1‑94 (MQ=255)
                                                                                     gCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAg     >  2:92330/1‑94 (MQ=255)
                                                                                        ggCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGt  >  1:1068719/1‑94 (MQ=255)
                                                                                        ggCAGCCCGGGCGGATACCTGGATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGt  >  1:10191150/1‑94 (MQ=255)
                                                                                           |                                                                                          
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGT  >  NC_000913/2071939‑2072120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT  >  NC_000913/2071939‑2072123
                                                                                           |                                                                                             
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGC                                                                                             <  SRR4302545.601642/94‑1 (MQ=60)
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCAGAGCCGGCACGGACCGGGAGGATGCCGGCAGC                                                                                             >  SRR4302545.10736119/1‑94 (MQ=60)
  CGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCT                                                                                           <  SRR4302545.4010585/94‑1 (MQ=60)
  CGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCT                                                                                           >  SRR4302545.4479105/1‑94 (MQ=60)
  CGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCT                                                                                           <  SRR4302545.663092/94‑1 (MQ=60)
   GGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTG                                                                                          <  SRR4302545.5124738/94‑1 (MQ=60)
    GGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGG                                                                                         >  SRR4302545.2155468/1‑94 (MQ=60)
    GGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTCG                                                                                         >  SRR4302545.405964/1‑94 (MQ=60)
     GGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCCCGGGCCGGGATGATGCCGGCAGCCTGGG                                                                                        >  SRR4302545.7861929/1‑94 (MQ=60)
     GGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGG                                                                                        <  SRR4302545.263262/94‑1 (MQ=60)
     GGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGG                                                                                        <  SRR4302545.5475654/94‑1 (MQ=60)
       GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCG                                                                                      >  SRR4302545.9804816/1‑94 (MQ=60)
        TATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGG                                                                                     >  SRR4302545.1730066/1‑94 (MQ=60)
         ATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGA                                                                                    <  SRR4302545.6540202/94‑1 (MQ=60)
          taggtgGCTGCTGGCCATTCTTCCGTTTATGTTAAGGATGATGACGGCTCCGGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGAT                                                                                   <  SRR4302545.9487716/88‑1 (MQ=60)
          aatgctgtgtctgtacattgTTCCGGTGATGTTAAGGATGATGCCGGCTCCGGTGCCGGCGCGGTCCGGGATGATGCCGGCTGCCTGGGCGGAT                                                                                   <  SRR4302545.8822626/74‑1 (MQ=60)
          TATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGAT                                                                                   <  SRR4302545.9519148/94‑1 (MQ=60)
            TGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAC                                                                                 <  SRR4302545.7155056/94‑1 (MQ=60)
            TGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAC                                                                                 >  SRR4302545.5021720/1‑94 (MQ=60)
             GGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACC                                                                                <  SRR4302545.6251926/94‑1 (MQ=60)
              GTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCT                                                                               >  SRR4302545.659461/1‑94 (MQ=60)
               TGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTG                                                                              >  SRR4302545.1790760/1‑94 (MQ=60)
                GCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGA                                                                             <  SRR4302545.7638066/94‑1 (MQ=60)
                 TTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAA                                                                            >  SRR4302545.2626593/1‑94 (MQ=60)
                  TGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAAT                                                                           <  SRR4302545.4861493/94‑1 (MQ=60)
                  TGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCCGGATGATGCCGGCAGCCTGGGCGGATACCTGAAT                                                                           >  SRR4302545.2151789/1‑94 (MQ=60)
                  CGCTGGCCATTCTTCCGTTTATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAAT                                                                           <  SRR4302545.3031409/94‑1 (MQ=60)
                   TCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATC                                                                          <  SRR4302545.4373724/94‑1 (MQ=60)
                    CTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCT                                                                         <  SRR4302545.10019955/94‑1 (MQ=60)
                    CTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCT                                                                         >  SRR4302545.10728665/1‑94 (MQ=60)
                      GGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGG                                                                       <  SRR4302545.4869755/94‑1 (MQ=60)
                      GGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGG                                                                       >  SRR4302545.1071869/1‑94 (MQ=60)
                       GCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGT                                                                      <  SRR4302545.2293704/94‑1 (MQ=60)
                         CATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTAC                                                                    <  SRR4302545.5448778/94‑1 (MQ=60)
                           TTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACAC                                                                  <  SRR4302545.3873793/94‑1 (MQ=60)
                             CTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACAC                                                                >  SRR4302545.2804874/1‑94 (MQ=60)
                             CTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACAC                                                                >  SRR4302545.159652/1‑94 (MQ=60)
                             CTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACAC                                                                >  SRR4302545.5381955/1‑94 (MQ=60)
                             CTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACAC                                                                <  SRR4302545.10182861/94‑1 (MQ=60)
                             CTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACAC                                                                >  SRR4302545.3437377/1‑94 (MQ=60)
                                CCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGCATCTGGCACACACGTC                                                             >  SRR4302545.3548371/1‑94 (MQ=60)
                                 CGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCC                                                            >  SRR4302545.9444700/1‑94 (MQ=60)
                                  GTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCT                                                           >  SRR4302545.6972116/1‑94 (MQ=60)
                                  GTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCT                                                           >  SRR4302545.4930554/1‑94 (MQ=60)
                                    TGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGGCTGGGCGGTTACCTGAATCTGGTACACACGTCCTCC                                                         >  SRR4302545.8074143/1‑94 (MQ=60)
                                    TGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC                                                         >  SRR4302545.10526219/1‑94 (MQ=60)
                                     GATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGGACACACGTCCTCCG                                                        >  SRR4302545.2731776/1‑94 (MQ=60)
                                        GTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCC                                                     <  SRR4302545.2388110/94‑1 (MQ=60)
                                           AAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGT                                                  <  SRR4302545.3553124/94‑1 (MQ=60)
                                           AAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGT                                                  <  SRR4302545.896617/94‑1 (MQ=60)
                                           AAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGT                                                  <  SRR4302545.8482704/94‑1 (MQ=60)
                                            AGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGGAGCCTGGGCGGCTACCTGAATCTGGTACACACGTCCTCCGGCCTGTG                                                 >  SRR4302545.7691807/1‑94 (MQ=60)
                                             GGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGG                                                >  SRR4302545.3063730/1‑94 (MQ=60)
                                             GGATGATGACGGCGCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGG                                                <  SRR4302545.10500131/94‑1 (MQ=60)
                                              GATGATGACGGTTCCCGTGCGGGCAGGGGCGGGGATGATGCCGACAGCCTGGGAGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGG                                               <  SRR4302545.7503192/94‑1 (MQ=60)
                                                TGATGACGCCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCT                                             <  SRR4302545.2180838/94‑1 (MQ=60)
                                                  ATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGA                                           >  SRR4302545.801150/1‑94 (MQ=60)
                                                   TGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAC                                          >  SRR4302545.6076960/1‑94 (MQ=60)
                                                     ACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAT                                        <  SRR4302545.8604977/94‑1 (MQ=60)
                                                      CGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATT                                       >  SRR4302545.8978838/1‑94 (MQ=60)
                                                       GGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTG                                      >  SRR4302545.8812239/1‑94 (MQ=60)
                                                        GCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGT                                     >  SRR4302545.7954182/1‑94 (MQ=60)
                                                         CTCCCGTGCCGGCACGGTCCGGGATGATGCGGGCAGCGTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGGTGACATTGTG                                    <  SRR4302545.1546798/94‑1 (MQ=60)
                                                         CTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTG                                    <  SRR4302545.1144348/94‑1 (MQ=60)
                                                          TCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGG                                   >  SRR4302545.10086174/1‑94 (MQ=60)
                                                            CCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCA                                 >  SRR4302545.9792711/1‑94 (MQ=60)
                                                                GCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGG                             >  SRR4302545.4278457/1‑94 (MQ=60)
                                                                 CCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGG                            <  SRR4302545.10212587/94‑1 (MQ=60)
                                                                  CGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGA                           >  SRR4302545.2044211/1‑94 (MQ=60)
                                                                  CGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGA                           <  SRR4302545.7694835/94‑1 (MQ=60)
                                                                  CAGCACGGTCCGGGATGATGCCTGCAGCCTGGGAGGATACCTGCATCTGGTACACCCGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGA                           <  SRR4302545.8319659/94‑1 (MQ=60)
                                                                    GCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAC                         >  SRR4302545.10724340/1‑94 (MQ=60)
                                                                     CACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACC                        <  SRR4302545.8273195/94‑1 (MQ=60)
                                                                      CCGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCC                       <  SRR4302545.2595665/94‑1 (MQ=60)
                                                                       CGGTCCGGGATGATGCCGGCATCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCG                      <  SRR4302545.2211412/94‑1 (MQ=60)
                                                                       CGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCG                      <  SRR4302545.10815639/94‑1 (MQ=60)
                                                                        GGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACGCGC                     >  SRR4302545.659808/1‑94 (MQ=60)
                                                                            CGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACCTTGTGGCACAGGGAACCCGCCACA                 >  SRR4302545.4783191/1‑94 (MQ=60)
                                                                            CGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACA                 >  SRR4302545.862017/1‑94 (MQ=60)
                                                                             GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG                >  SRR4302545.9780062/1‑94 (MQ=60)
                                                                                ATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAT             >  SRR4302545.5916791/1‑94 (MQ=60)
                                                                                ATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAT             <  SRR4302545.3596511/94‑1 (MQ=60)
                                                                                ATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAT             <  SRR4302545.751266/94‑1 (MQ=60)
                                                                                  GATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCCCAGCATGA           >  SRR4302545.8735581/1‑94 (MQ=60)
                                                                                  GATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGA           >  SRR4302545.2623180/1‑94 (MQ=60)
                                                                                  GATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGA           >  SRR4302545.8735576/1‑94 (MQ=60)
                                                                                   ATGCCGGCAGCGTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCTTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAA          <  SRR4302545.653530/94‑1 (MQ=60)
                                                                                   ATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAA          >  SRR4302545.5815687/1‑94 (MQ=60)
                                                                                    TGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAA         >  SRR4302545.2793375/1‑94 (MQ=60)
                                                                                      CCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGC       <  SRR4302545.5416536/94‑1 (MQ=60)
                                                                                       CGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCG      <  SRR4302545.6732213/94‑1 (MQ=60)
                                                                                        GGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGT     <  SRR4302545.3781641/94‑1 (MQ=60)
                                                                                        GGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGT     >  SRR4302545.1091974/1‑94 (MQ=60)
                                                                                        GGCAGCCCGGGCGGATACCTGGATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGT     >  SRR4302545.10492266/1‑94 (MQ=60)
                                                                                         GCAGCCTGGGCGGATCCCTGAATCTGTTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTC    <  SRR4302545.6703136/94‑1 (MQ=60)
                                                                                         GCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTC    <  SRR4302545.4652627/94‑1 (MQ=60)
                                                                                          CAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCA   >  SRR4302545.2411813/1‑94 (MQ=60)
                                                                                           AGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT  >  SRR4302545.8336323/1‑94 (MQ=60)
                                                                                           AGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT  <  SRR4302545.8277026/94‑1 (MQ=60)
                                                                                           |                                                                                             
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT  >  NC_000913/2071939‑2072123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑