Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,072,384 |
(C)6→7 |
coding (2824/3120 nt) |
b2000 → |
outer membrane fluffing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,072,378 | 1 | . | C | 96.6%
| 585.9
/ 10.1
| 177 | coding (2818/3120 nt) | b2000 | outer membrane fluffing protein |
| Reads supporting (aligned to +/- strand): ref base . (2/4); new base C (67/104); total (69/108) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 202 total aligned reads displayed.
AAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGC > NC_000913/2072285‑2072464
|
aaGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑Tg < 1:2470454/94‑1 (MQ=255)
aGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑c < 2:9795079/94‑1 (MQ=255)
aGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑c < 1:4742401/94‑1 (MQ=255)
ttCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑ccc < 2:8363665/94‑1 (MQ=255)
cGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑ccccc > 2:672029/1‑94 (MQ=255)
cGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑ccccc > 1:3782748/1‑94 (MQ=255)
cGGGCATGGCAGTGCACAACATGTGCGTGCCGGATTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑ccccc < 2:10191150/94‑1 (MQ=255)
ggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑ccccccc < 2:265796/94‑2 (MQ=255)
gCATGGCAGTCCACACCATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑ccccccct < 1:4597776/94‑3 (MQ=255)
aTGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑ccccccctgc > 1:9581521/1‑90 (MQ=255)
aTGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑cccccccctg < 2:3102087/94‑5 (MQ=255)
aGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGAc > 1:7992499/1‑94 (MQ=255)
gTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACa > 1:9728391/1‑94 (MQ=255)
tGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACa < 1:6961195/94‑1 (MQ=255)
tGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAg > 2:6801696/1‑94 (MQ=255)
cacaCCATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTg < 1:5931144/94‑1 (MQ=255)
cacaACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGt > 1:8729301/1‑94 (MQ=255)
caacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCa < 2:1057277/94‑1 (MQ=255)
caacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTAGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCa > 1:9206371/1‑94 (MQ=255)
aacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCaa < 2:6485149/94‑1 (MQ=255)
aacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCaa < 2:4041696/94‑1 (MQ=255)
caTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCaaa < 1:9322820/94‑1 (MQ=255)
aTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAac > 1:8441665/1‑94 (MQ=255)
aTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAac > 1:2033581/1‑94 (MQ=255)
gtgcgtgcCGTTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCAGCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAaca < 1:4200648/94‑1 (MQ=255)
gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCCCCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAAcaca < 2:8431910/94‑1 (MQ=255)
gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAg > 2:9436555/1‑94 (MQ=255)
gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAg < 1:7680845/94‑1 (MQ=255)
cgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAgt < 1:2679573/94‑1 (MQ=255)
gcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGtgtg > 2:4240997/1‑94 (MQ=255)
gcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGtgtg < 2:2625809/94‑1 (MQ=255)
ccGGTTTCCGTCTGGGCAACCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTgtga < 2:9156786/94‑1 (MQ=255)
cGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTgtgag > 2:3733654/1‑94 (MQ=255)
ggTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGCAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTgtgagt > 1:8804932/1‑94 (MQ=255)
ggTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTgtgagt > 1:6334660/1‑94 (MQ=255)
gTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTgtgagt < 1:2197600/94‑1 (MQ=255)
gTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTgtgagtg < 2:8490213/94‑1 (MQ=255)
gTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTgtgagtg > 2:1622206/1‑94 (MQ=255)
ttCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGaa > 2:2522421/1‑94 (MQ=255)
cGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAtt > 2:5579551/1‑94 (MQ=255)
cGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTa < 2:2670105/94‑1 (MQ=255)
cGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTa < 2:2130422/94‑1 (MQ=255)
gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTa < 1:2324650/94‑1 (MQ=255)
gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAc < 2:7256043/94‑1 (MQ=255)
gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAc < 2:360367/94‑1 (MQ=255)
tCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAcc < 2:5394049/94‑1 (MQ=255)
tCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAcc > 2:2592017/1‑94 (MQ=255)
cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg < 2:6545774/94‑1 (MQ=255)
cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg > 1:9991695/1‑94 (MQ=255)
tGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCgg > 2:1738616/1‑94 (MQ=255)
gggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGt < 1:2973194/94‑1 (MQ=255)
ggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg < 2:4664107/94‑1 (MQ=255)
ggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg > 2:8900094/1‑94 (MQ=255)
ggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg < 1:6374995/94‑1 (MQ=255)
cAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGa > 2:1257622/1‑94 (MQ=255)
aGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa < 2:3642856/94‑1 (MQ=255)
aGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAc > 2:1324879/1‑94 (MQ=255)
aGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAc < 1:9879064/94‑1 (MQ=255)
aGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAc < 1:4149508/94‑1 (MQ=255)
gCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACt < 2:5019466/94‑1 (MQ=255)
gCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACt < 2:7520955/94‑1 (MQ=255)
acaACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggt < 2:1343730/94‑1 (MQ=255)
acaACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggt < 1:1679745/94‑1 (MQ=255)
caACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtg < 1:1268022/94‑1 (MQ=255)
aaCGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtgg > 2:6439961/1‑94 (MQ=255)
aaCGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtgg < 1:5793992/94‑1 (MQ=255)
aCGATATGACCTTTGGCGAAGGCACCTCATCCCGTTC‑‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTggg < 1:1894874/94‑1 (MQ=255)
aCGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtgg < 1:1829017/94‑1 (MQ=255)
gATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTa > 2:1363742/1‑94 (MQ=255)
gATATGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTa < 2:9447675/94‑1 (MQ=255)
gATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc > 1:5627436/1‑94 (MQ=255)
atatGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc < 2:7474658/94‑1 (MQ=255)
atatGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc > 1:3070324/1‑94 (MQ=255)
tatGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAcg > 1:525690/1‑93 (MQ=255)
tatGACCTTGGGCGAAGGCACCTCACCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc < 1:8213026/94‑1 (MQ=255)
atGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAcgg < 1:3095513/94‑3 (MQ=255)
atGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAcgg < 2:4277312/94‑3 (MQ=255)
atGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAcgg > 1:7921286/1‑92 (MQ=255)
tGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGc < 1:10194418/94‑1 (MQ=255)
tGACCTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGc > 1:7336171/1‑94 (MQ=255)
ccTTTGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCtt < 1:5489589/94‑1 (MQ=255)
tttGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCt < 2:3867270/94‑1 (MQ=255)
tttGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCt < 2:6861183/94‑1 (MQ=255)
tttGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGGGCAAAACACAGGGGGAGGGAATTACCGGGGAACTGGGGGGTAGGGCCTTCt > 2:2322190/1‑94 (MQ=255)
ttGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTg > 2:5095872/1‑94 (MQ=255)
tGGCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGGACGGGCTTCTGt > 1:1942203/1‑94 (MQ=255)
ggCGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGtt < 1:367107/94‑1 (MQ=255)
gCGAAGGCACCTCATCCCG‑TGCCCCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGt < 1:6924827/94‑1 (MQ=255)
cGAAGGCACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTa < 1:10062358/94‑1 (MQ=255)
cGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTAt > 2:7940449/1‑94 (MQ=255)
cGAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTAt > 1:1188345/1‑94 (MQ=255)
gAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATc > 2:3840643/1‑94 (MQ=255)
gAAGGCACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATc < 2:262107/94‑1 (MQ=255)
cACCTCATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCa < 2:7726767/94‑1 (MQ=255)
cACCTCATCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCAc > 1:6988568/1‑94 (MQ=255)
cATCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTc < 2:6291867/94‑1 (MQ=255)
cATCCCG‑TGC‑‑CCCCCCTGCATGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCa < 1:3417371/94‑1 (MQ=255)
aTCCCG‑TGCC‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCa > 1:6590731/1‑94 (MQ=255)
tCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGc > 1:5385804/1‑94 (MQ=255)
tCCCG‑TGC‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGCGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTTAGc > 1:4019857/1‑94 (MQ=255)
|
AAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑TG‑‑‑CCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGC > NC_000913/2072285‑2072464
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATA > NC_000913/2072293‑2072477
|
GCATGGCAGTCCACACCATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCct < SRR4302545.4715500/94‑3 (MQ=60)
CATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCcct < SRR4302545.4154687/94‑4 (MQ=60)
CATGCCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCctg < SRR4302545.593875/94‑4 (MQ=60)
ATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGC > SRR4302545.9863901/1‑94 (MQ=60)
TGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCG < SRR4302545.7911419/94‑1 (MQ=60)
TGGCAGTGCACAAAAAGTGCGGGCCGGGTGCCGTCTGGGCAGCCACAACGATTTGTGCTTTGGCGAAGGCACCTCCACCCG‑G‑GC‑‑CC‑CCCCTGCG < SRR4302545.9238236/94‑1 (MQ=25)
GGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGT > SRR4302545.794714/1‑94 (MQ=60)
GGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCctgcgg > SRR4302545.752279/1‑88 (MQ=60)
AGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGAC > SRR4302545.8219864/1‑94 (MQ=60)
GTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACA > SRR4302545.10018064/1‑94 (MQ=60)
TGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACA < SRR4302545.7153099/94‑1 (MQ=60)
GCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGT < SRR4302545.7370606/94‑1 (MQ=60)
GCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGT > SRR4302545.9477538/1‑94 (MQ=60)
CACACCATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTG < SRR4302545.6091161/94‑1 (MQ=60)
CACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGT > SRR4302545.8982688/1‑94 (MQ=60)
CACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTG < SRR4302545.470641/94‑1 (MQ=60)
ACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGC < SRR4302545.427124/94‑1 (MQ=60)
CAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCA > SRR4302545.2165652/1‑94 (MQ=60)
CAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTAGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCA > SRR4302545.9476225/1‑94 (MQ=60)
AACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAA > SRR4302545.6687178/1‑94 (MQ=60)
CATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAA < SRR4302545.9596168/94‑1 (MQ=60)
ATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAAC > SRR4302545.8685707/1‑94 (MQ=60)
ATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAAC < SRR4302545.5700236/94‑1 (MQ=60)
ATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAAC > SRR4302545.2083751/1‑94 (MQ=60)
ATGTGCGTGCCGATTACCATCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAAC < SRR4302545.9998586/94‑1 (MQ=60)
TGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACA > SRR4302545.5007803/1‑94 (MQ=60)
GTGCGTGCCGTTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCAGCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACA < SRR4302545.4305518/94‑1 (MQ=60)
GTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACAC > SRR4302545.9822432/1‑94 (MQ=60)
GCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAG < SRR4302545.7898327/94‑1 (MQ=60)
GCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAG < SRR4302545.7898328/94‑1 (MQ=60)
CGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGT < SRR4302545.2744138/94‑1 (MQ=60)
CGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGAGAAGGCACCTCATCCCG‑T‑G‑‑‑CA‑CAACAGCGTGACAGCGCACAACACAGTG > SRR4302545.4514544/1‑94 (MQ=60)
TGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGT < SRR4302545.3998127/94‑1 (MQ=60)
GGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGCAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGT > SRR4302545.9060475/1‑94 (MQ=60)
GGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGT > SRR4302545.6507462/1‑94 (MQ=60)
GGTTTCCGTCTCGGCAGCCACAACGATATGACCTTTAGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CCTCCCCTGCGTGACAGTGCAAAACACAGTGTGAGT > SRR4302545.6507463/1‑94 (MQ=60)
GTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGT < SRR4302545.2251302/94‑1 (MQ=60)
CCGTCTGGGCAGGCACAACGATATGACCTTTGGGGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCTGCGCGACAGTGCAAAACAGAGAGCGCGTGAATTA > SRR4302545.10436055/1‑94 (MQ=60)
CCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATT > SRR4302545.898667/1‑94 (MQ=60)
CCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATT > SRR4302545.3797392/1‑94 (MQ=60)
CGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTA > SRR4302545.10041030/1‑94 (MQ=60)
CATCTGAGCAGCCACAACGATATGGCCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTA < SRR4302545.1722487/94‑1 (MQ=60)
GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTA < SRR4302545.2381251/94‑1 (MQ=60)
GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAC > SRR4302545.136105/1‑94 (MQ=60)
GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAC > SRR4302545.23879/1‑94 (MQ=60)
GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAC > SRR4302545.3201291/1‑94 (MQ=60)
GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAC < SRR4302545.4705383/94‑1 (MQ=60)
CTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACC > SRR4302545.10539722/1‑94 (MQ=60)
CTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCG > SRR4302545.10287961/1‑94 (MQ=60)
TGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGG < SRR4302545.8720327/94‑1 (MQ=60)
GGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGT < SRR4302545.3045630/94‑1 (MQ=60)
GGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTG > SRR4302545.8196170/1‑94 (MQ=60)
GGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTG < SRR4302545.6549260/94‑1 (MQ=60)
GCAGCAACATCGATATGACTTTTGGCGAAGGCCCCTCATCCCG‑TAC‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGA < SRR4302545.8788394/94‑1 (MQ=60)
CAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAA > SRR4302545.2331355/1‑94 (MQ=60)
AGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAC < SRR4302545.10172612/94‑1 (MQ=60)
AGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAC < SRR4302545.4253141/94‑1 (MQ=60)
CCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTG < SRR4302545.5785106/94‑1 (MQ=60)
ACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGT < SRR4302545.1719564/94‑1 (MQ=60)
CAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTG < SRR4302545.1296362/94‑1 (MQ=60)
CAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCTCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGG < SRR4302545.5478551/94‑1 (MQ=60)
AACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGG < SRR4302545.5949815/94‑1 (MQ=60)
AACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGG > SRR4302545.10379730/1‑94 (MQ=60)
ACGATATGACCTTTGGCGAAGGCACCTCATCCCGTT‑C‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGG < SRR4302545.1941587/94‑1 (MQ=60)
ACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGG < SRR4302545.1873461/94‑1 (MQ=60)
ACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGG < SRR4302545.9463533/94‑1 (MQ=60)
ACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGG < SRR4302545.8599565/94‑1 (MQ=60)
ACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGG < SRR4302545.1941588/94‑1 (MQ=60)
ACGATATGACCTCTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGG < SRR4302545.1941586/94‑1 (MQ=60)
CGATATGCCCGTTGGCGAAGGCACCTCATCGCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGT < SRR4302545.7745054/94‑1 (MQ=60)
GATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAC > SRR4302545.5777060/1‑94 (MQ=60)
ATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTA > SRR4302545.3157888/1‑94 (MQ=60)
ATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAC > SRR4302545.3145622/1‑94 (MQ=60)
TATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACG > SRR4302545.537419/1‑94 (MQ=60)
TATGACCTTGGGCGAAGGCACCTCACCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAC < SRR4302545.8450749/94‑1 (MQ=60)
ATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGG > SRR4302545.8146204/1‑94 (MQ=60)
ATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGG < SRR4302545.3171760/94‑1 (MQ=60)
TGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGC > SRR4302545.7542021/1‑94 (MQ=60)
TGACCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGC < SRR4302545.10495604/94‑1 (MQ=60)
CCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTT > SRR4302545.7164196/1‑94 (MQ=60)
CCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTT < SRR4302545.5633913/94‑1 (MQ=60)
CCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTT < SRR4302545.310729/94‑1 (MQ=60)
CCTTTGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTT < SRR4302545.5633912/94‑1 (MQ=60)
TTTGGCGAAGGCACCTCATCCCG‑T‑GCCCCC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTT < SRR4302545.2727577/94‑1 (MQ=60)
TTGGCGAAGGCACCCCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTG < SRR4302545.10192574/94‑1 (MQ=60)
TGGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGGACGGGCTTCTGT > SRR4302545.1990350/1‑94 (MQ=60)
GGCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTT < SRR4302545.375133/94‑1 (MQ=60)
GCGAAGGCACCTCATCCCG‑T‑GCCCCC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGT < SRR4302545.7115615/94‑1 (MQ=60)
GCGAAGGCACCTCATCCCG‑T‑GCCCCC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGT < SRR4302545.7115616/94‑1 (MQ=60)
GCGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTA < SRR4302545.3727346/94‑1 (MQ=60)
CGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTA > SRR4302545.128953/1‑94 (MQ=60)
CGAAGGCACCTCATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTA < SRR4302545.10360145/94‑1 (MQ=60)
CGAAGGCACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTAT > SRR4302545.1214812/1‑94 (MQ=60)
CACCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCAC > SRR4302545.7181334/1‑94 (MQ=60)
CCTCATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCT < SRR4302545.2018361/94‑1 (MQ=60)
CTCATCCCG‑T‑G‑‑‑CC‑CCCCTGCGTGACAGTGCAAAgaacagtgggagtgagatacctatgcactgttggttcaagccgcctgtcagcccctcggga < SRR4302545.5677440/94‑62 (MQ=60)
CATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCA < SRR4302545.7023733/94‑1 (MQ=60)
CATCCCG‑T‑GC‑‑CC‑CCCCTGCATGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCA < SRR4302545.3500839/94‑1 (MQ=60)
ATCCCG‑T‑GCC‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCA > SRR4302545.6771106/1‑94 (MQ=60)
ATCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAG < SRR4302545.6483640/94‑1 (MQ=60)
TCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGC > SRR4302545.5526021/1‑94 (MQ=60)
TCCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGCGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTTAGC > SRR4302545.4120442/1‑94 (MQ=60)
CCCG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCT < SRR4302545.5225536/94‑1 (MQ=60)
CG‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCC > SRR4302545.6778762/1‑94 (MQ=60)
G‑T‑GC‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCC < SRR4302545.10325737/94‑1 (MQ=60)
C‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCCGCTCCCGGG > SRR4302545.4044418/1‑94 (MQ=60)
C‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGG < SRR4302545.7185061/94‑1 (MQ=60)
C‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGG < SRR4302545.8193142/94‑1 (MQ=60)
gcCC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGG > SRR4302545.10725773/3‑94 (MQ=60)
gcCC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGG < SRR4302545.933985/92‑1 (MQ=60)
gcCC‑CCCCTGCGTGACAGGGCAAAACACAGGGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCCCACCTTCAGCTCCCCG > SRR4302545.4524770/3‑94 (MQ=60)
CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGG < SRR4302545.3362261/94‑1 (MQ=60)
C‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCCGCTCCCGGGAA > SRR4302545.3691638/1‑94 (MQ=60)
C‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGA > SRR4302545.654846/1‑94 (MQ=60)
C‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGGGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCCGACCTTCAGCTCCCGGGGG > SRR4302545.9575003/1‑94 (MQ=60)
C‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGCGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGA > SRR4302545.9574999/1‑94 (MQ=60)
CCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGA > SRR4302545.2656177/1‑94 (MQ=60)
CCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGAT > SRR4302545.6321434/1‑94 (MQ=60)
CCTGCGTGACAGTGCAAAACACAGTGTGAGCGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGAT > SRR4302545.4098775/1‑94 (MQ=60)
CTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACGGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATA > SRR4302545.3317581/1‑94 (MQ=60)
|
GCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCG‑T‑G‑‑‑CC‑CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATA > NC_000913/2072293‑2072477
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
