Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,976,431 T→C H164R (CAC→CGC)  lysA ← diaminopimelate decarboxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,976,4310TC98.6% 1185.9 / 1.3 356H164R (CAC→CGC) lysAdiaminopimelate decarboxylase
Reads supporting (aligned to +/- strand):  ref base T (3/2);  new base C (185/166);  total (188/168)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01

Only 100 of 397 total aligned reads displayed.

AGAACCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGTGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCTGGCG  >  NC_000913/2976340‑2976521
                                                                                           |                                                                                          
 gAACCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGcgct                                                                                         >  2:1308031/1‑94 (MQ=255)
 gAACCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGcgct                                                                                         >  2:5794979/1‑94 (MQ=255)
 gAACCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACAGcgct                                                                                         >  1:4862041/1‑94 (MQ=255)
  aaCCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGcgctt                                                                                        >  2:4624162/1‑94 (MQ=255)
  aaCCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGcgctt                                                                                        <  2:3177792/94‑1 (MQ=255)
   aCCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGcgcttg                                                                                       >  2:7643789/1‑94 (MQ=255)
   aCCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGcgcttg                                                                                       <  2:1135254/94‑1 (MQ=255)
      aaTGTGCATGTGAATGCCGACCAGCTCCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGGGTACCAGATAACGCGCTTGCTg                                                                                    >  1:9569161/1‑94 (MQ=255)
       aTGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGt                                                                                   >  2:7361861/1‑94 (MQ=255)
       aTGGGCATGGGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGt                                                                                   <  2:6375441/94‑1 (MQ=255)
        tgtgCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGtt                                                                                  <  2:6572302/94‑1 (MQ=255)
        tgtgCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGtt                                                                                  >  2:10151937/1‑94 (MQ=255)
         ctgCATGTGAATGCCGACCAGCTGCAGATGATGCCGTTGTATCACCTCCAGTGCGGCGGGCAGATCGGTGTACCACATCCCGCGCTTGCTGttt                                                                                 >  1:8159252/2‑94 (MQ=255)
          tgCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGtttt                                                                                <  1:8658161/94‑1 (MQ=255)
          tgCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGtttt                                                                                >  2:3368561/1‑94 (MQ=255)
             aTGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGc                                                                             >  2:5924865/1‑94 (MQ=255)
             aTGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGc                                                                             >  1:7409774/1‑94 (MQ=255)
             aTGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGc                                                                             >  2:1614330/1‑94 (MQ=255)
             aTGTGAATGCCGACCAGCTGCAGATGATGACGGTGTATCACGTCCAGGGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGc                                                                             >  1:3516189/1‑94 (MQ=255)
              tgtgAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGcc                                                                            <  2:6500119/94‑1 (MQ=255)
                 gAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCAcc                                                                         >  1:5108528/1‑94 (MQ=255)
                 gAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCAcc                                                                         >  1:7242783/1‑94 (MQ=255)
                 gAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCAcc                                                                         >  2:4436673/1‑94 (MQ=255)
                 gAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCAcc                                                                         <  1:2122684/94‑1 (MQ=255)
                 gAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCAcc                                                                         <  2:9497918/94‑1 (MQ=255)
                 gAATGCCGACCAGCTGCAGATGATGACGATGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCAcc                                                                         >  2:10023131/1‑94 (MQ=255)
                  aaTGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCg                                                                        <  1:6601324/94‑1 (MQ=255)
                   aTGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCgg                                                                       >  1:6152382/1‑94 (MQ=255)
                    tGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGt                                                                      >  1:10040686/1‑94 (MQ=255)
                     gCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTa                                                                     <  2:3649488/94‑1 (MQ=255)
                      ccGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTAt                                                                    <  2:9913405/94‑1 (MQ=255)
                       cGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTAtt                                                                   >  1:756845/1‑94 (MQ=255)
                       cGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTAtt                                                                   <  2:3973422/94‑1 (MQ=255)
                        caCCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTg                                                                  <  1:4196983/93‑1 (MQ=255)
                         aCCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTgg                                                                 >  2:10446740/1‑94 (MQ=255)
                          ccAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGt                                                                >  1:7838328/1‑94 (MQ=255)
                          ccAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGt                                                                <  2:10262822/94‑1 (MQ=255)
                          ccAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGt                                                                >  2:7491271/1‑94 (MQ=255)
                          ccAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGCTGTCGCCACCGGTATTGGt                                                                >  1:9365957/1‑94 (MQ=255)
                           cAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCCGGATTGGtt                                                               >  2:2916376/1‑94 (MQ=255)
                            aGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGttt                                                              <  1:2715086/94‑1 (MQ=255)
                             gCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTGTTGGtttt                                                             >  2:6859682/1‑94 (MQ=255)
                             gCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGtttt                                                             <  1:6407272/94‑1 (MQ=255)
                              cTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGttttt                                                            <  2:2803102/94‑1 (MQ=255)
                              cTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGCATTGGttttt                                                            <  2:7187201/94‑1 (MQ=255)
                               tGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGtttttt                                                           <  2:2188749/94‑1 (MQ=255)
                                gCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTCTTGGTTTTTTg                                                          >  1:7186935/1‑94 (MQ=255)
                                  aGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTGTTTGGc                                                        >  2:4940835/1‑94 (MQ=255)
                                   gatgatGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCt                                                       >  1:9006853/1‑94 (MQ=255)
                                   gatgatGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCt                                                       <  1:8389215/94‑1 (MQ=255)
                                     tgatgaCGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTAt                                                     >  1:3293902/1‑94 (MQ=255)
                                     tgatgaCGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTAt                                                     <  2:1541220/94‑1 (MQ=255)
                                      gatgaCGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATg                                                    <  2:6771615/94‑1 (MQ=255)
                                      gatgaCGTTGTATCACGTCCAGTGCGGCGGGAAGATCGGGGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATg                                                    >  2:8186663/1‑94 (MQ=255)
                                         gaCGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTcc                                                 <  2:3996175/94‑1 (MQ=255)
                                          aCGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCg                                                >  1:6824414/1‑94 (MQ=255)
                                           cGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGt                                               <  2:2511982/94‑1 (MQ=255)
                                              tGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGAc                                            <  1:4454930/94‑1 (MQ=255)
                                              tGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGAc                                            <  1:10256260/94‑1 (MQ=255)
                                                tATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCa                                          >  2:2717121/1‑94 (MQ=255)
                                                  tCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCaaa                                        <  1:1710811/94‑1 (MQ=255)
                                                   cACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGGTTTTTGGCTATGTGCGTGAGCAAAc                                       >  1:8503069/1‑94 (MQ=255)
                                                     cGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAAccc                                     >  2:7880200/1‑94 (MQ=255)
                                                      gTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAAgccc                                    >  1:4064815/1‑94 (MQ=255)
                                                      gTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAAcccc                                    >  1:1430520/1‑94 (MQ=255)
                                                       tCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCg                                   >  1:193681/1‑94 (MQ=255)
                                                        ccAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCgg                                  <  1:915571/94‑1 (MQ=255)
                                                        ccAGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCgg                                  <  1:3063146/94‑1 (MQ=255)
                                                          aGTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGAt                                >  2:9023377/1‑94 (MQ=255)
                                                           gTGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGAtt                               >  2:9694277/1‑94 (MQ=255)
                                                            tGCGGCGGGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTa                              >  2:5321771/1‑94 (MQ=255)
                                                             gcggcgGGCAGATCGGTGTACGAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTaa                             <  1:2574166/94‑1 (MQ=255)
                                                              cggcggGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAAc                            <  1:8961086/94‑1 (MQ=255)
                                                              cggcggGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAAc                            >  1:549720/1‑94 (MQ=255)
                                                               ggcggGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAAcg                           <  1:3394137/94‑1 (MQ=255)
                                                                 cggGCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAAcgcg                         <  1:3445764/94‑1 (MQ=255)
                                                                    gCAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAg                      <  1:2485680/94‑1 (MQ=255)
                                                                     cAGATCGGTGTACCAGATACCGTGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGc                     >  2:8574255/1‑94 (MQ=255)
                                                                     cAGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGc                     <  1:9290252/94‑1 (MQ=255)
                                                                      aGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGcc                    >  1:5825387/1‑94 (MQ=255)
                                                                      aGATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGcc                    >  1:7081785/1‑94 (MQ=255)
                                                                      aGATCGGTGTACCAAATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGCTTAACGCGCAGcc                    >  2:9315222/1‑94 (MQ=255)
                                                                       gATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCa                   >  1:2295331/1‑94 (MQ=255)
                                                                       gATCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCa                   >  1:121313/1‑94 (MQ=255)
                                                                        aTCGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCAt                  >  1:9926948/1‑94 (MQ=255)
                                                                          cGGTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATAc                >  2:10532138/1‑94 (MQ=255)
                                                                           ggTGTACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATAcc               <  2:4297593/94‑1 (MQ=255)
                                                                            gtgtACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATAccc              <  2:6280915/94‑1 (MQ=255)
                                                                            gtgtACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATAccc              >  2:2124904/1‑94 (MQ=255)
                                                                              gtACCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGa            >  2:1436081/1‑94 (MQ=255)
                                                                                aCCAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATg          >  1:283096/1‑94 (MQ=255)
                                                                                 ccAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGc         <  2:228892/94‑1 (MQ=255)
                                                                                  cAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGcc        >  2:6651491/1‑94 (MQ=255)
                                                                                  cAGATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGcc        >  1:10450188/1‑94 (MQ=255)
                                                                                    gATACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCt      >  1:9789119/1‑94 (MQ=255)
                                                                                     aTACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCTg     <  2:175203/94‑1 (MQ=255)
                                                                                     aTACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCTg     >  2:5267044/1‑94 (MQ=255)
                                                                                      tACCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCTgg    >  1:3825776/1‑94 (MQ=255)
                                                                                       aCCGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCTGGc   <  2:1860242/94‑1 (MQ=255)
                                                                                        ccGCGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCTGGCg  >  1:7350870/1‑94 (MQ=255)
                                                                                           |                                                                                          
AGAACCAATGTGCATGTGAATGCCGACCAGCTGCAGATGATGACGTTGTATCACGTCCAGTGCGGCGGGCAGATCGGTGTACCAGATACCGTGCTTGCTGTTTTCGCCACCGGTATTGGTTTTTTGGCTATGTCCGTGACCAAACCCCGGATTAACGCGCAGCCATACCCGATGCCCTGGCG  >  NC_000913/2976340‑2976521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 277 total aligned reads displayed.
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCGTAA  >  NC_000913/2998301‑2998487
                                                                                             |                                                                                             
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                               <  SRR4302545.7559006/94‑1 (MQ=60)
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                               >  SRR4302545.4979410/1‑94 (MQ=60)
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                               <  SRR4302545.5648958/94‑1 (MQ=60)
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                               <  SRR4302545.2053911/94‑1 (MQ=60)
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                               <  SRR4302545.2053913/94‑1 (MQ=60)
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                               >  SRR4302545.10148211/1‑94 (MQ=60)
CCAAATAGTCAAATCGAGGGGATTGCTATGGAAGCGCGAGAAGCAACCGCTACGGGTAAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                               <  SRR4302545.7771607/94‑1 (MQ=60)
 CAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGC                                                                                              >  SRR4302545.4300036/1‑94 (MQ=60)
 CAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAACAATGCATGCGCGTCGATGCCATTGCTAAGGTCGC                                                                                              >  SRR4302545.603501/1‑94 (MQ=60)
 CAAATGTTCAAATCGAGGGAATTTCTATGGAAGCCCGGGAAGCAACCGCTATGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGC                                                                                              <  SRR4302545.8103835/94‑1 (MQ=60)
   AATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCG                                                                                            <  SRR4302545.1860861/94‑1 (MQ=60)
   AATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCG                                                                                            <  SRR4302545.8787728/94‑1 (MQ=60)
    ATGTTCAAGTCATGGGGATTTCTATGGAAGCGCGGGAAGCAGCCGCTACGGGTGACTCATGCATGCGCGTCAATGCCATTGCTTCGGTCACCGG                                                                                           <  SRR4302545.9621755/94‑1 (MQ=60)
    ATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGG                                                                                           <  SRR4302545.7495885/94‑1 (MQ=60)
    ATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGG                                                                                           <  SRR4302545.511987/94‑1 (MQ=60)
     TGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGG                                                                                          <  SRR4302545.5953158/94‑1 (MQ=60)
     TGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGG                                                                                          <  SRR4302545.9251608/94‑1 (MQ=60)
     AGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGG                                                                                          <  SRR4302545.2073914/94‑1 (MQ=60)
      GTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGC                                                                                         <  SRR4302545.10531306/94‑1 (MQ=60)
        TCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGG                                                                                       >  SRR4302545.10106701/1‑94 (MQ=60)
        TCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGG                                                                                       <  SRR4302545.6629269/94‑1 (MQ=60)
         ccccTCGAGGGGATTTCTCTGGAAGCGCGGGAAGCCACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGG                                                                                      <  SRR4302545.8315812/90‑1 (MQ=60)
         CAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGG                                                                                      >  SRR4302545.1918757/1‑94 (MQ=60)
          AAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGC                                                                                     >  SRR4302545.1263437/1‑94 (MQ=60)
          AAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGC                                                                                     <  SRR4302545.6591859/94‑1 (MQ=60)
           AATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCA                                                                                    >  SRR4302545.4671833/1‑94 (MQ=60)
           AATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCA                                                                                    >  SRR4302545.10887589/1‑94 (MQ=60)
            atctagtgggtgtttatggatgcggaGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGACATTGCTAAGGTCGCCGGGCGGGCAC                                                                                   <  SRR4302545.6224971/68‑1 (MQ=60)
            ATCGAGGGGATTTCTATGGCAGCGCGGGAAGCAACCGCTCCGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                   >  SRR4302545.10407245/1‑94 (MQ=60)
            ATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                   <  SRR4302545.1433789/94‑1 (MQ=60)
            ATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                   <  SRR4302545.7638873/94‑1 (MQ=60)
            ATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                   <  SRR4302545.8625901/94‑1 (MQ=60)
            ATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAAGCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                   >  SRR4302545.3929434/1‑94 (MQ=60)
             TCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACG                                                                                  <  SRR4302545.8689614/94‑1 (MQ=60)
             TCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACG                                                                                  <  SRR4302545.5503972/94‑1 (MQ=60)
             TCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACG                                                                                  <  SRR4302545.9184637/94‑1 (MQ=60)
             TCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACG                                                                                  <  SRR4302545.9184639/94‑1 (MQ=60)
               GAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGAT                                                                                >  SRR4302545.10508273/1‑94 (MQ=60)
               GAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGAT                                                                                <  SRR4302545.819623/94‑1 (MQ=60)
               GAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGCCGCCGGGCGGGCACGAT                                                                                >  SRR4302545.3589998/1‑94 (MQ=60)
                AGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATA                                                                               <  SRR4302545.4927042/94‑1 (MQ=60)
                AGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATA                                                                               >  SRR4302545.2353144/1‑94 (MQ=60)
                 GGTGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATAT                                                                              <  SRR4302545.3113559/94‑1 (MQ=60)
                 GGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATAT                                                                              >  SRR4302545.2045078/1‑94 (MQ=60)
                 GGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATAT                                                                              <  SRR4302545.8213893/94‑1 (MQ=60)
                  GGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATA                                                                             <  SRR4302545.1874105/94‑1 (MQ=60)
                   GGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATTCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATAC                                                                            >  SRR4302545.6746092/1‑94 (MQ=60)
                   GGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATAC                                                                            <  SRR4302545.10238265/94‑1 (MQ=60)
                   GGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATAC                                                                            <  SRR4302545.8036051/94‑1 (MQ=60)
                    GATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACT                                                                           <  SRR4302545.3975510/94‑1 (MQ=60)
                    GATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACT                                                                           >  SRR4302545.38718/1‑94 (MQ=60)
                     ATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTG                                                                          >  SRR4302545.6801527/1‑94 (MQ=60)
                     ATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTG                                                                          <  SRR4302545.6820411/94‑1 (MQ=60)
                     ATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTG                                                                          >  SRR4302545.7151672/1‑94 (MQ=60)
                       TTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGAC                                                                        <  SRR4302545.6589714/94‑1 (MQ=60)
                       TTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGAC                                                                        <  SRR4302545.8327463/94‑1 (MQ=60)
                       TTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGAC                                                                        <  SRR4302545.1121126/94‑1 (MQ=60)
                        TCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACG                                                                       >  SRR4302545.1858411/1‑94 (MQ=60)
                        TCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACG                                                                       >  SRR4302545.1858412/1‑94 (MQ=60)
                        TCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACG                                                                       <  SRR4302545.4961869/94‑1 (MQ=60)
                         CTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGA                                                                      >  SRR4302545.3059390/1‑94 (MQ=60)
                          TATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAT                                                                     >  SRR4302545.4562555/1‑94 (MQ=60)
                          TATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAT                                                                     >  SRR4302545.851946/1‑94 (MQ=60)
                          TATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACCGACGAT                                                                     >  SRR4302545.7869054/1‑94 (MQ=60)
                           ATGGAAGCGCGGGAAGCAACCGCGACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATT                                                                    <  SRR4302545.6009739/94‑1 (MQ=60)
                            TGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTA                                                                   >  SRR4302545.7472862/1‑94 (MQ=60)
                             GGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTAT                                                                  <  SRR4302545.9259370/94‑1 (MQ=60)
                                AGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTT                                                               <  SRR4302545.4322586/94‑1 (MQ=60)
                                  ctctttttgcaatcgcttCGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGTCGGGCACGATATATTGACGATTATGTTAT                                                             >  SRR4302545.9685265/19‑94 (MQ=60)
                                  CGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAT                                                             >  SRR4302545.4836938/1‑94 (MQ=60)
                                  CGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAT                                                             <  SRR4302545.6892502/94‑1 (MQ=60)
                                  CGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAT                                                             <  SRR4302545.9534522/94‑1 (MQ=60)
                                  CGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAT                                                             <  SRR4302545.8372743/94‑1 (MQ=60)
                                  CGCGGGAAGCAAACGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAT                                                             >  SRR4302545.7634469/1‑94 (MQ=60)
                                   GCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATG                                                            >  SRR4302545.4415088/1‑94 (MQ=60)
                                   GCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATG                                                            >  SRR4302545.10525003/1‑94 (MQ=60)
                                    CGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGTGCACGATATACTGACGATTATGTTATGG                                                           <  SRR4302545.7216947/94‑1 (MQ=60)
                                    CGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGG                                                           >  SRR4302545.1102564/1‑94 (MQ=60)
                                    CGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGG                                                           <  SRR4302545.7216946/94‑1 (MQ=60)
                                    CGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGG                                                           >  SRR4302545.4056638/1‑94 (MQ=60)
                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                          <  SRR4302545.7043258/94‑1 (MQ=60)
                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                          >  SRR4302545.821982/1‑94 (MQ=60)
                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                          >  SRR4302545.2647140/1‑94 (MQ=60)
                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                          <  SRR4302545.3240501/94‑1 (MQ=60)
                                      GGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCG                                                         <  SRR4302545.3956891/94‑1 (MQ=60)
                                      GGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCG                                                         <  SRR4302545.7214610/94‑1 (MQ=60)
                                      GGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGAGATACTGACGATTATGTTATGGCG                                                         >  SRR4302545.5979647/1‑94 (MQ=60)
                                       GAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGG                                                        <  SRR4302545.2023704/94‑1 (MQ=60)
                                       GAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGG                                                        <  SRR4302545.3332698/94‑1 (MQ=60)
                                       GAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGG                                                        <  SRR4302545.5831906/94‑1 (MQ=60)
                                        AAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGG                                                       <  SRR4302545.1420400/94‑1 (MQ=60)
                                        AAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGG                                                       <  SRR4302545.2834687/94‑1 (MQ=60)
                                        AAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGG                                                       <  SRR4302545.8534590/94‑1 (MQ=60)
                                        AAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGG                                                       <  SRR4302545.2403786/94‑1 (MQ=60)
                                         AGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGC                                                      <  SRR4302545.10434165/94‑1 (MQ=60)
                                          GCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCA                                                     <  SRR4302545.6072836/94‑1 (MQ=60)
                                           CAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCGT                                                    >  SRR4302545.7822614/1‑94 (MQ=60)
                                           CAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCAT                                                    >  SRR4302545.3417070/1‑94 (MQ=60)
                                            AACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATG                                                   >  SRR4302545.872770/1‑94 (MQ=60)
                                             ACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGgctgg                                                  >  SRR4302545.4073441/1‑89 (MQ=60)
                                             ACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGT                                                  <  SRR4302545.8875726/94‑1 (MQ=60)
                                             ACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGT                                                  <  SRR4302545.5658049/94‑1 (MQ=60)
                                              CCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATTCTGACGATTATGTTATGGCGGGCATGTG                                                 <  SRR4302545.8478941/94‑1 (MQ=60)
                                              CCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGGG                                                 >  SRR4302545.1023561/1‑94 (MQ=60)
                                              CCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTG                                                 <  SRR4302545.10617900/94‑1 (MQ=60)
                                              ACGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGTCGATTATGTTATGGCGGGCATGTG                                                 <  SRR4302545.5862017/94‑1 (MQ=60)
                                               CGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGT                                                >  SRR4302545.6613977/1‑94 (MQ=60)
                                               CGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAGTATGTTATCGCGGGCcggggg                                                >  SRR4302545.7140524/1‑88 (MQ=60)
                                                atcgtcagtatATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCGTGTGGT                                               >  SRR4302545.3955631/12‑94 (MQ=60)
                                                GCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGGTGTGTT                                               >  SRR4302545.8860706/1‑94 (MQ=60)
                                                GCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTT                                               >  SRR4302545.10554371/1‑94 (MQ=60)
                                                 CTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGggtgtggtt                                              >  SRR4302545.114235/1‑85 (MQ=60)
                                                 CTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTA                                              <  SRR4302545.2501137/94‑1 (MQ=60)
                                                 CTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTA                                              <  SRR4302545.3869111/94‑1 (MQ=60)
                                                 CTACGGGTGAATCATGCATGCGCGTCCATGCCATTGCTAAGGACGCCGGGCGGGCACGATATACTGCCGATTATGTTATGGCGGGCggctgtgt                                              >  SRR4302545.6842244/1‑86 (MQ=60)
                                                  TACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGgttt                                             >  SRR4302545.9634035/1‑90 (MQ=60)
                                                   ACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATG                                            <  SRR4302545.714973/94‑1 (MQ=60)
                                                   ACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATG                                            <  SRR4302545.2733490/94‑1 (MQ=60)
                                                   ACGGGTGAATCATGCATGCGCGTCGATGCCATGGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATG                                            <  SRR4302545.7004378/94‑1 (MQ=60)
                                                    CGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGgtttgg                                           >  SRR4302545.9446629/1‑88 (MQ=60)
                                                    CGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGC                                           <  SRR4302545.4881637/94‑1 (MQ=60)
                                                     GGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGTCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCG                                          <  SRR4302545.3485428/94‑1 (MQ=60)
                                                     GGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGgctgtggtttgtg                                          >  SRR4302545.7756507/1‑81 (MQ=60)
                                                     GGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGgagggggttttcg                                          >  SRR4302545.9804511/1‑81 (MQ=60)
                                                     GGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCG                                          <  SRR4302545.7124973/94‑1 (MQ=60)
                                                      GGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATTCGA                                         >  SRR4302545.8567526/1‑94 (MQ=60)
                                                       GTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAA                                        <  SRR4302545.876585/94‑1 (MQ=60)
                                                       GTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAA                                        <  SRR4302545.3774888/94‑1 (MQ=60)
                                                         GAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAT                                      <  SRR4302545.1967602/94‑1 (MQ=60)
                                                         GAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAT                                      <  SRR4302545.9739944/94‑1 (MQ=60)
                                                          AATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGGAATA                                     >  SRR4302545.4181393/1‑94 (MQ=60)
                                                           ATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATGCTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATAT                                    <  SRR4302545.1416726/94‑1 (MQ=60)
                                                           ATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGCGAAATAT                                    >  SRR4302545.2783601/1‑94 (MQ=60)
                                                           ATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCGTGAGTTGTTCGAAATAT                                    >  SRR4302545.10778023/1‑94 (MQ=60)
                                                           ATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATAT                                    <  SRR4302545.616574/94‑1 (MQ=60)
                                                            TCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATG                                   <  SRR4302545.6548823/94‑1 (MQ=60)
                                                            TCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGT                                  <  SRR4302545.10484310/94‑1 (MQ=60)
                                                             CATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGT                                  <  SRR4302545.1113048/94‑1 (MQ=60)
                                                               TGCATGCGCGTCGATGCCATTGTTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTAC                                <  SRR4302545.3094236/94‑1 (MQ=60)
                                                               TGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGGGTTATGCGAAAAATGTAC                                >  SRR4302545.9350297/1‑94 (MQ=60)
                                                                GCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCgactgttatgtgggatatgtgtg                               >  SRR4302545.3996977/1‑71 (MQ=60)
                                                                GCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCcagtgttttgcgaaaaatctatg                               >  SRR4302545.3308944/1‑71 (MQ=60)
                                                                GCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACG                               <  SRR4302545.5105734/94‑1 (MQ=60)
                                                                GCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGCCGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACG                               <  SRR4302545.10766653/94‑1 (MQ=60)
                                                                 CATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGT                              <  SRR4302545.7038925/94‑1 (MQ=60)
                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGtgtggggtatgggaaaaatgtacgga                             >  SRR4302545.3731649/1‑68 (MQ=60)
                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATTCGAAATATGTAAGTA                             >  SRR4302545.10769730/1‑94 (MQ=60)
                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTA                             <  SRR4302545.7446746/94‑1 (MQ=60)
                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTA                             <  SRR4302545.4448326/94‑1 (MQ=60)
                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTA                             <  SRR4302545.3489300/94‑1 (MQ=60)
                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGGTATGGCGGGCAGGTGTTActggcaatagtaaagta                             >  SRR4302545.4779659/1‑77 (MQ=60)
                                                                   TGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGCGAAATATGTACCTAG                            >  SRR4302545.965817/1‑94 (MQ=60)
                                                                   TGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAG                            <  SRR4302545.4062516/94‑1 (MQ=60)
                                                                    GCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGC                           <  SRR4302545.7435111/94‑1 (MQ=60)
                                                                     GGCGTCTATGCCATTGCTAAGGTCGCGGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCC                          <  SRR4302545.10479212/94‑1 (MQ=60)
                                                                     CGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCC                          <  SRR4302545.7882354/94‑1 (MQ=60)
                                                                     CGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAGATGTACGTAGCC                          <  SRR4302545.6336606/94‑1 (MQ=60)
                                                                     CGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTAACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCC                          <  SRR4302545.6359666/94‑1 (MQ=60)
                                                                      GCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCGCGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCC                         <  SRR4302545.1815643/94‑1 (MQ=60)
                                                                       CGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGGGAAATATTTACTTAGCCCT                        >  SRR4302545.7151000/1‑94 (MQ=60)
                                                                       CGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCT                        <  SRR4302545.5646496/94‑1 (MQ=60)
                                                                        GTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTA                       <  SRR4302545.6411792/94‑1 (MQ=60)
                                                                         TCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTTTGCGCAAAATGTACGTAGCCCctt                      >  SRR4302545.5078002/1‑91 (MQ=60)
                                                                         TCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTAT                      <  SRR4302545.2986376/94‑1 (MQ=60)
                                                                         TCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTAT                      <  SRR4302545.7023761/94‑1 (MQ=60)
                                                                          CGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGgaactagccctctc                     >  SRR4302545.9793394/1‑80 (MQ=60)
                                                                          CGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATC                     <  SRR4302545.1447938/94‑1 (MQ=60)
                                                                          CGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATC                     <  SRR4302545.6297782/94‑1 (MQ=60)
                                                                          CGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTACC                     <  SRR4302545.1447937/94‑1 (MQ=60)
                                                                           GATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCG                    <  SRR4302545.9719798/94‑1 (MQ=60)
                                                                            ATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGC                   <  SRR4302545.892615/94‑1 (MQ=60)
                                                                             TGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCA                  <  SRR4302545.4698710/94‑1 (MQ=60)
                                                                             TGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCA                  <  SRR4302545.371096/94‑1 (MQ=60)
                                                                              GCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCAC                 <  SRR4302545.786743/94‑1 (MQ=60)
                                                                               CCATTGCTAAGGTCGCCGTGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACA                <  SRR4302545.8925642/94‑1 (MQ=60)
                                                                               CCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTTTTCGAAATATGTtagtaaccccatcgccct                >  SRR4302545.18171/1‑76 (MQ=60)
                                                                                CATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCCTGTGTTTTGCGAAATATGTACGTAGCCCTATCGCACAT               >  SRR4302545.10549182/1‑94 (MQ=60)
                                                                                CATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGGCCTATCGCACAT               >  SRR4302545.4225788/1‑94 (MQ=60)
                                                                                CATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACAT               <  SRR4302545.5386252/94‑1 (MQ=60)
                                                                                CATTGCTAAGGTCGCCGGGCGGGCACAATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACAT               <  SRR4302545.8592892/94‑1 (MQ=60)
                                                                                 ATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATG              <  SRR4302545.10171387/94‑1 (MQ=60)
                                                                                 ATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATG              <  SRR4302545.676322/94‑1 (MQ=60)
                                                                                  TTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGG             <  SRR4302545.10395926/94‑1 (MQ=60)
                                                                                    GCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTT           <  SRR4302545.6483844/94‑1 (MQ=60)
                                                                                    GCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTT           <  SRR4302545.7007556/94‑1 (MQ=60)
                                                                                     CTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGggggggttatgcggaaaatgtacggaggacactcgcacatggttt          >  SRR4302545.1379754/1‑49 (MQ=60)
                                                                                     CTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTA          <  SRR4302545.1184411/94‑1 (MQ=60)
                                                                                     CTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTA          <  SRR4302545.6130162/94‑1 (MQ=60)
                                                                                      TAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTAT         <  SRR4302545.3002270/94‑1 (MQ=60)
                                                                                      TAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAAATGTACGTAGCCCTCTCGCACACGGTTAT         >  SRR4302545.4647554/1‑94 (MQ=60)
                                                                                       AAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATT        >  SRR4302545.4894812/1‑94 (MQ=60)
                                                                                       AAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATG        <  SRR4302545.4226218/94‑1 (MQ=60)
                                                                                       AAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAGGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATG        <  SRR4302545.6365744/94‑1 (MQ=60)
                                                                                         GGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCC      <  SRR4302545.2814274/94‑1 (MQ=60)
                                                                                          GTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCG     <  SRR4302545.9613829/94‑1 (MQ=60)
                                                                                          GTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCG     <  SRR4302545.5912980/94‑1 (MQ=60)
                                                                                           TCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCGT    <  SRR4302545.2717794/94‑1 (MQ=60)
                                                                                            CGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGCGAAATATGTACGTAGCCCTATCCCACATGGTTATGCCGTA   >  SRR4302545.2668761/1‑94 (MQ=60)
                                                                                            CGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTtagccaaaaatggaactacccctctctcccatggggatgcctta   >  SRR4302545.3455814/1‑50 (MQ=60)
                                                                                            CGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTTTTCGAAATATGTAAGGAGCCCTATCGCACATGGgtattcccta   >  SRR4302545.6765207/1‑84 (MQ=60)
                                                                                             |                                                                                             
CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCGTAA  >  NC_000913/2998301‑2998487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: