Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,998,394	A→G	T10A (ACC→GCC)	b2866 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,998,394	0	A	G	100.0%	926.8 / NA	267	T10A (ACC→GCC)	b2866	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (100/167); total (100/167)

Only 100 of 272 total aligned reads displayed.

AATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCC  >  NC_000913/2998304‑2998483

aaTGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGcc                                                                                         <  2:6246191/93‑1 (MQ=255)

 aTGTTCAAATCGAGGGGGTTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcg                                                                                        >  2:1163480/1‑93 (MQ=255)

  tGTTCAAATGGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcgg                                                                                       <  2:4739414/93‑1 (MQ=255)

   gTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGCTGCCATTGCTAAGGTCGCcggg                                                                                      >  2:1102613/1‑93 (MQ=255)

   gTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcggg                                                                                      >  2:779264/1‑93 (MQ=255)

   gTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcggg                                                                                      <  2:6134008/93‑1 (MQ=255)

    ttCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcgggc                                                                                     >  2:4272160/1‑93 (MQ=255)

     tCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcgggcg                                                                                    >  2:6459983/1‑93 (MQ=255)

      cAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcgggcgg                                                                                   >  1:938723/1‑93 (MQ=255)

       aaaTCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcgggcggg                                                                                  >  2:678367/1‑93 (MQ=255)

       aaaTCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcgggcggg                                                                                  >  1:5663499/1‑93 (MQ=255)

       aaaTCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCcgggcggg                                                                                  >  1:684016/1‑93 (MQ=255)

        aaTCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCgggcgggc                                                                                 <  2:4639945/93‑1 (MQ=255)

          tCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAc                                                                               >  1:4802875/1‑93 (MQ=255)

          tCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAc                                                                               >  1:211807/1‑93 (MQ=255)

            gAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGa                                                                             >  2:392515/1‑93 (MQ=255)

             aGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGat                                                                            <  2:3680231/93‑1 (MQ=255)

             aGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGat                                                                            >  2:838307/1‑93 (MQ=255)

             aGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGat                                                                            <  1:3828700/93‑1 (MQ=255)

             aGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGat                                                                            >  1:2768223/1‑93 (MQ=255)

              ggggATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGata                                                                           <  2:2595633/93‑1 (MQ=255)

              ggggATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGata                                                                           >  1:2056555/1‑93 (MQ=255)

               gggATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGatat                                                                          <  1:4947401/93‑1 (MQ=255)

                ggATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGAtata                                                                         <  2:3801990/93‑1 (MQ=255)

                  aTTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACt                                                                       <  2:5904253/93‑1 (MQ=255)

                   tttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTg                                                                      >  1:4061713/1‑93 (MQ=255)

                    ttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGa                                                                     <  1:5114390/93‑1 (MQ=255)

                    ttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGa                                                                     <  2:5774630/93‑1 (MQ=255)

                    ttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGa                                                                     <  2:3186810/93‑1 (MQ=255)

                    ttCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGACGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGa                                                                     <  1:1141109/93‑1 (MQ=255)

                      cTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACg                                                                   >  1:3130943/1‑93 (MQ=255)

                       tATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGa                                                                  >  1:753174/1‑93 (MQ=255)

                       tATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGa                                                                  <  1:2660984/93‑1 (MQ=255)

                         tGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAtt                                                                >  1:4872741/1‑93 (MQ=255)

                          ggAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAtta                                                               <  1:1964668/93‑1 (MQ=255)

                          ggAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAtta                                                               >  1:1347926/1‑93 (MQ=255)

                           gAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttat                                                              >  1:3755542/1‑93 (MQ=255)

                           gAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttat                                                              <  1:146983/93‑1 (MQ=255)

                           gAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttat                                                              >  2:1233246/1‑93 (MQ=255)

                             aGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgt                                                            >  1:3183725/1‑93 (MQ=255)

                             aGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgt                                                            <  1:6038371/93‑1 (MQ=255)

                             aGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgt                                                            <  1:367056/93‑1 (MQ=255)

                             aGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgt                                                            <  1:3811835/93‑1 (MQ=255)

                              gcgcGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgtt                                                           >  2:3434809/1‑93 (MQ=255)

                               cgcgGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgtta                                                          <  1:1839077/93‑1 (MQ=255)

                                gcgGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgttat                                                         <  1:968358/93‑1 (MQ=255)

                                gcgGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgttat                                                         >  1:3944671/1‑93 (MQ=255)

                                gcgGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAttatgttat                                                         <  2:1765994/93‑1 (MQ=255)

                                  gggAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATgg                                                       >  1:3565902/1‑93 (MQ=255)

                                    gAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCg                                                     <  2:2925526/93‑1 (MQ=255)

                                    gAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCg                                                     >  1:6116472/1‑93 (MQ=255)

                                        cAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCa                                                 <  2:160322/93‑1 (MQ=255)

                                              cTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGtt                                           <  1:2655884/93‑1 (MQ=255)

                                               tACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGttt                                          >  1:1424110/1‑92 (MQ=255)

                                               tACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGttt                                          >  1:4582232/1‑92 (MQ=255)

                                               tACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTa                                          <  1:2704210/93‑1 (MQ=255)

                                                aCGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTAt                                         <  2:3471718/93‑1 (MQ=255)

                                                 cGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATg                                        <  2:3742527/93‑1 (MQ=255)

                                                 cGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATg                                        <  2:48295/93‑1 (MQ=255)

                                                  gggTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGc                                       <  2:4541500/93‑1 (MQ=255)

                                                     tGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCgga                                    >  2:341642/1‑91 (MQ=255)

                                                        aTCATGCGTGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAata                                 <  1:2220344/93‑1 (MQ=255)

                                                        aTCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAata                                 <  2:2374696/93‑1 (MQ=255)

                                                         tCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAatat                                <  2:5870034/93‑1 (MQ=255)

                                                         tCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAatat                                <  2:3095367/93‑1 (MQ=255)

                                                         tCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAatat                                <  2:2819631/93‑1 (MQ=255)

                                                          catgcatgCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGGTTTGCGGAaaatt                               >  1:2921490/1‑92 (MQ=255)

                                                           atgcatgcGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACTATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGt                              >  2:2265920/1‑93 (MQ=255)

                                                            tgcatgcGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTa                             <  2:550394/93‑1 (MQ=255)

                                                            tgcatgcGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTa                             <  1:4118078/93‑1 (MQ=255)

                                                              catgcGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGCTGTGTTATGGGAAATATGTaag                           >  2:188790/1‑91 (MQ=255)

                                                              catgcGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGCGGAATATGTACg                           >  1:2373813/1‑93 (MQ=255)

                                                                tgcGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATTCGGAAAATGTAGGTa                         >  1:250443/1‑93 (MQ=255)

                                                                 gcgcGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCCTGTGTTTTTCGAAAAATGTACGTAg                        >  1:5678210/1‑93 (MQ=255)

                                                                    cgTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGccc                     <  2:5275527/93‑1 (MQ=255)

                                                                     gTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCt                    <  2:5115074/93‑1 (MQ=255)

                                                                      tCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCCATAGTTATTGAAAATATGTACGTATCCCTa                   >  2:149369/1‑93 (MQ=255)

                                                                        gATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATc                 <  2:1703233/93‑1 (MQ=255)

                                                                        gATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATc                 <  2:2425880/93‑1 (MQ=255)

                                                                         aTGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTTTTCGGAATATGTACGTAGACCTATCg                >  1:5099408/1‑93 (MQ=255)

                                                                          tGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCAAGTGGTATGCCAAAAATGTAAGTAGCCCTATCGc               >  1:6276315/1‑93 (MQ=255)

                                                                            ccATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGCGGAAAATGTACATAGCCCCATCGcac             >  2:5457766/1‑93 (MQ=255)

                                                                            ccATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGcac             <  1:1961662/93‑1 (MQ=255)

                                                                             cATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGTGAAATATGTACGTAGCCCTATCTcacc            >  2:503412/1‑92 (MQ=255)

                                                                             cATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATCTGTACGTAGCCCTATCGcaca            <  2:4109181/93‑1 (MQ=255)

                                                                              aTTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCGTGTGTTATGCGAAATATGTTCGTAGCCCCATCGcacct           >  2:194282/1‑91 (MQ=255)

                                                                               ttGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATg          <  2:4175257/93‑1 (MQ=255)

                                                                                tGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATgg         <  1:1629554/93‑1 (MQ=255)

                                                                                tGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATgg         <  2:206136/93‑1 (MQ=255)

                                                                                   tAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTa      <  2:533777/93‑1 (MQ=255)

                                                                                   tAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTa      <  1:639208/93‑1 (MQ=255)

                                                                                   tAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAAATGTATGTAAACCTATCGCACATggctt      >  1:3492538/1‑90 (MQ=255)

                                                                                    aaGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTAt     <  2:2191786/93‑1 (MQ=255)

                                                                                    aaGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTAt     <  1:5776289/93‑1 (MQ=255)

                                                                                     aGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTTTGCGAAATATGTACGTACGCCCATCCCCCATGGttttt    >  1:4208547/1‑90 (MQ=255)

                                                                                     aGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATg    <  1:5501269/93‑1 (MQ=255)

                                                                                      ggTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGc   <  2:3343370/93‑1 (MQ=255)

                                                                                       gTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGcc  <  1:4710948/93‑1 (MQ=255)

                                                                                       gTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGcc  <  1:133670/93‑1 (MQ=255)

                                                                                       gTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAAATGTACGTAGCCCTCTCGCACATGGTTATAcc  >  2:3134493/1‑93 (MQ=255)

AATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCC  >  NC_000913/2998304‑2998483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCGTA  >  NC_000913/2998301‑2998486

CCAAGTGTGCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                              <  SRR4302537.754359/94‑1 (MQ=60)

CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCG                                                                                              <  SRR4302537.6394558/94‑1 (MQ=60)

CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCC                                                                                              >  SRR4302537.5150331/1‑94 (MQ=60)

 CAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGC                                                                                             >  SRR4302537.2516338/1‑94 (MQ=60)

  AAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCC                                                                                            >  SRR4302537.2434291/1‑94 (MQ=60)

    ATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGG                                                                                          >  SRR4302537.3855598/1‑94 (MQ=60)

     TGTTCAAATCGAGGGGATTTTTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGG                                                                                         <  SRR4302537.2776188/94‑1 (MQ=60)

     TGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGG                                                                                         <  SRR4302537.2277522/94‑1 (MQ=60)

     TGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGG                                                                                         <  SRR4302537.6142256/94‑1 (MQ=60)

     TGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGG                                                                                         <  SRR4302537.4145264/94‑1 (MQ=60)

       TTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCG                                                                                       <  SRR4302537.2537481/94‑1 (MQ=60)

        TCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGG                                                                                      >  SRR4302537.945197/1‑94 (MQ=60)

        TCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGG                                                                                      <  SRR4302537.303916/94‑1 (MQ=60)

         CAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGG                                                                                     >  SRR4302537.5702253/1‑94 (MQ=60)

         CAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGG                                                                                     >  SRR4302537.688705/1‑94 (MQ=60)

           AATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCA                                                                                   >  SRR4302537.3196253/1‑94 (MQ=60)

           AATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCA                                                                                   <  SRR4302537.1350786/94‑1 (MQ=60)

            ATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                  >  SRR4302537.4836008/1‑94 (MQ=60)

            ATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                  <  SRR4302537.999240/94‑1 (MQ=60)

            ATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCAC                                                                                  >  SRR4302537.213321/1‑94 (MQ=60)

               GAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGAT                                                                               >  SRR4302537.2787569/1‑94 (MQ=60)

               GAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGAT                                                                               >  SRR4302537.2232277/1‑94 (MQ=60)

               GAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGAT                                                                               >  SRR4302537.5202941/1‑94 (MQ=60)

                AGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATA                                                                              >  SRR4302537.2070990/1‑94 (MQ=60)

                AGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATA                                                                              <  SRR4302537.3855542/94‑1 (MQ=60)

                  GGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATA                                                                            <  SRR4302537.4981509/94‑1 (MQ=60)

                    GATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACT                                                                          <  SRR4302537.1179103/94‑1 (MQ=60)

                    GATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACT                                                                          >  SRR4302537.6362674/1‑94 (MQ=60)

                    GATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACT                                                                          <  SRR4302537.4723009/94‑1 (MQ=60)

                     ATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTG                                                                         <  SRR4302537.2717749/94‑1 (MQ=60)

                     ATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTG                                                                         >  SRR4302537.4090094/1‑94 (MQ=60)

                       TTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCTTGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGAC                                                                       >  SRR4302537.3478406/1‑94 (MQ=60)

                       TTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGAC                                                                       <  SRR4302537.5149645/94‑1 (MQ=60)

                       TTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGACGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGAC                                                                       <  SRR4302537.1149037/94‑1 (MQ=60)

                        TCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACG                                                                      <  SRR4302537.3696188/94‑1 (MQ=60)

                        TCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACG                                                                      >  SRR4302537.3152897/1‑94 (MQ=60)

                         CTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGA                                                                     >  SRR4302537.758309/1‑94 (MQ=60)

                          TATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAT                                                                    <  SRR4302537.1383037/94‑1 (MQ=60)

                          TATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAT                                                                    <  SRR4302537.4036219/94‑1 (MQ=60)

                          TATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAT                                                                    <  SRR4302537.2679576/94‑1 (MQ=60)

                          TATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGAT                                                                    <  SRR4302537.3543156/94‑1 (MQ=60)

                           ATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATT                                                                   >  SRR4302537.4906372/1‑94 (MQ=60)

                           ATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATT                                                                   <  SRR4302537.6449702/94‑1 (MQ=60)

                           ATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATT                                                                   <  SRR4302537.6458806/94‑1 (MQ=60)

                            TGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTA                                                                  >  SRR4302537.1357321/1‑94 (MQ=60)

                             GGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTAT                                                                 <  SRR4302537.4976357/94‑1 (MQ=60)

                             GGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTAT                                                                 >  SRR4302537.3781914/1‑94 (MQ=60)

                             GGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTAT                                                                 <  SRR4302537.1978329/94‑1 (MQ=60)

                             GGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTAT                                                                 <  SRR4302537.1978330/94‑1 (MQ=60)

                              GAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATG                                                                <  SRR4302537.148028/94‑1 (MQ=60)

                               AAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGT                                                               >  SRR4302537.3206102/1‑94 (MQ=60)

                                AGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTT                                                              <  SRR4302537.5139484/94‑1 (MQ=60)

                                AGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTT                                                              <  SRR4302537.6079855/94‑1 (MQ=60)

                                AGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTT                                                              <  SRR4302537.772876/94‑1 (MQ=60)

                                AGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTT                                                              <  SRR4302537.3838559/94‑1 (MQ=60)

                                AGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTT                                                              <  SRR4302537.369604/94‑1 (MQ=60)

                                 GCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTA                                                             <  SRR4302537.5696695/94‑1 (MQ=60)

                                 GCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTA                                                             <  SRR4302537.5768669/94‑1 (MQ=60)

                                  CGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAT                                                            <  SRR4302537.1851871/94‑1 (MQ=60)

                                  CGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAT                                                            >  SRR4302537.3972261/1‑94 (MQ=60)

                                   GCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATG                                                           <  SRR4302537.975036/94‑1 (MQ=60)

                                   GCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATG                                                           <  SRR4302537.3766452/94‑1 (MQ=60)

                                   GCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATG                                                           <  SRR4302537.1515663/94‑1 (MQ=60)

                                    CGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGG                                                          >  SRR4302537.3591050/1‑94 (MQ=60)

                                    CGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGG                                                          <  SRR4302537.13896/94‑1 (MQ=60)

                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                         >  SRR4302537.269162/1‑94 (MQ=60)

                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                         >  SRR4302537.6290073/1‑94 (MQ=60)

                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                         >  SRR4302537.3809399/1‑94 (MQ=60)

                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                         >  SRR4302537.1435552/1‑94 (MQ=60)

                                     GGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGC                                                         >  SRR4302537.2605709/1‑94 (MQ=60)

                                      GGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCG                                                        >  SRR4302537.6158508/1‑94 (MQ=60)

                                      GGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCG                                                        <  SRR4302537.4724382/94‑1 (MQ=60)

                                        AAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGG                                                      <  SRR4302537.6191095/94‑1 (MQ=60)

                                         AGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGC                                                     <  SRR4302537.4513764/94‑1 (MQ=60)

                                           CAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGAT                                                   >  SRR4302537.948345/1‑94 (MQ=60)

                                           CAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCAT                                                   <  SRR4302537.781302/94‑1 (MQ=60)

                                           CAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCAT                                                   <  SRR4302537.307668/94‑1 (MQ=60)

                                            AACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGC‑TGT                                                 >  SRR4302537.949951/1‑94 (MQ=60)

                                             ACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCAggg                                                 >  SRR4302537.4088414/1‑91 (MQ=60)

                                             ACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGT                                                 <  SRR4302537.4766098/94‑1 (MQ=60)

                                              CCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTG                                                <  SRR4302537.3831431/94‑1 (MQ=60)

                                               CGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGgctgggt                                               >  SRR4302537.4599949/1‑87 (MQ=60)

                                                 CTACGGGTGAATCGTGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTA                                             <  SRR4302537.4320016/94‑1 (MQ=60)

                                                 CTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTT                                             >  SRR4302537.1434026/1‑94 (MQ=60)

                                                 CTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTT                                             >  SRR4302537.4613927/1‑94 (MQ=60)

                                                 CTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTA                                             <  SRR4302537.2329151/94‑1 (MQ=60)

                                                 CTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTA                                             <  SRR4302537.2674448/94‑1 (MQ=60)

                                                  TACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTAT                                            <  SRR4302537.4902004/94‑1 (MQ=60)

                                                  TACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTAT                                            <  SRR4302537.2069793/94‑1 (MQ=60)

                                                  TACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTAT                                            <  SRR4302537.2121521/94‑1 (MQ=60)

                                                  TACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTAT                                            <  SRR4302537.5710464/94‑1 (MQ=60)

                                                  TACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTAT                                            <  SRR4302537.2723090/94‑1 (MQ=60)

                                                    CGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCAatggtttttg                                          >  SRR4302537.90810/1‑84 (MQ=60)

                                                    CGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGC                                          <  SRR4302537.1656330/94‑1 (MQ=60)

                                                     GGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCG                                         <  SRR4302537.2922993/94‑1 (MQ=60)

                                                      GGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGggtgtggttttcga                                        >  SRR4302537.6249604/1‑80 (MQ=60)

                                                         GAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTtttgggaaa                                     >  SRR4302537.5709279/1‑85 (MQ=60)

                                                         GAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAT                                     <  SRR4302537.5995663/94‑1 (MQ=60)

                                                          AATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGgtttgtgcaaaa                                    >  SRR4302537.662551/1‑82 (MQ=60)

                                                          AATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATA                                    <  SRR4302537.1743543/94‑1 (MQ=60)

                                                           ATCATGCGTGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATAT                                   <  SRR4302537.2235991/94‑1 (MQ=60)

                                                           ATCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATAT                                   <  SRR4302537.1989441/94‑1 (MQ=60)

                                                            TCATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGgtttgcggaaaatt                                  >  SRR4302537.2942017/1‑80 (MQ=60)

                                                              ATGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTA                                <  SRR4302537.2754193/94‑1 (MQ=60)

                                                               TGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTAC                               <  SRR4302537.4146837/94‑1 (MQ=60)

                                                               TGCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTAC                               <  SRR4302537.3672262/94‑1 (MQ=60)

                                                                GCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGCGGAATATGTACG                              >  SRR4302537.2390538/1‑94 (MQ=60)

                                                                GCATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACG                              <  SRR4302537.4878040/94‑1 (MQ=60)

                                                                 CATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGCGAAATATGTAAGT                             >  SRR4302537.2678506/1‑94 (MQ=60)

                                                                 CATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGT                             <  SRR4302537.4922632/94‑1 (MQ=60)

                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATTCGGAAAATGTAGGTA                            >  SRR4302537.252218/1‑94 (MQ=60)

                                                                  ATGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTA                            <  SRR4302537.2087810/94‑1 (MQ=60)

                                                                   TGCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCCTGTGTTTTTCGAAAAATGTACGTAG                           >  SRR4302537.5717059/1‑94 (MQ=60)

                                                                    GCGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGC                          <  SRR4302537.1346270/94‑1 (MQ=60)

                                                                     CGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCC                         <  SRR4302537.694163/94‑1 (MQ=60)

                                                                     CGCGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCC                         <  SRR4302537.6430108/94‑1 (MQ=60)

                                                                       CGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATTTGTTTTTCGAAATATTTACGTAGACCT                       >  SRR4302537.5803962/1‑94 (MQ=60)

                                                                       CGTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCT                       <  SRR4302537.3316982/94‑1 (MQ=60)

                                                                        GTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCGGGTGTTTTGCGAAAAATGTAactaggccca                      >  SRR4302537.4569671/1‑84 (MQ=60)

                                                                        GTCGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGGAATATGTACGTAGCCCTA                      >  SRR4302537.1580109/1‑94 (MQ=60)

                                                                          CGATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGGTATGCGAAATATGTACGTAGCCCTATC                    >  SRR4302537.3846444/1‑94 (MQ=60)

                                                                           GATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGCTGTGTTATGCGAAATATGTACGTAGCCCTATCC                   >  SRR4302537.5199563/1‑94 (MQ=60)

                                                                           GATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGGGTTATGCGAAATATGTACGTAGCCCTATCC                   >  SRR4302537.5134541/1‑94 (MQ=60)

                                                                           GATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTTTTCGGAATATGTACGTAGACCTATCG                   >  SRR4302537.5134540/1‑94 (MQ=60)

                                                                            ATGCCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCAAGTGGTATGCCAAAAATGTAAGTAGCCCTATCGC                  >  SRR4302537.6319377/1‑94 (MQ=60)

                                                                               CCATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACA               <  SRR4302537.1975304/94‑1 (MQ=60)

                                                                                CATTGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGGTATTCGGAATATTTACGTAAGCCTTTCGCACAT              >  SRR4302537.3864485/1‑94 (MQ=55)

                                                                                   TGCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGT           <  SRR4302537.1640959/94‑1 (MQ=60)

                                                                                    GCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTT          <  SRR4302537.3744255/94‑1 (MQ=60)

                                                                                    GCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTT          <  SRR4302537.1952624/94‑1 (MQ=60)

                                                                                    GCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTT          <  SRR4302537.5063016/94‑1 (MQ=60)

                                                                                    GCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTT          <  SRR4302537.5972622/94‑1 (MQ=60)

                                                                                    GCTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTAGGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTT          <  SRR4302537.1969395/94‑1 (MQ=60)

                                                                                     CTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGGATGTGTTATGTGAAATATGTAAGTAGCCCTATCGCACATGGGTA         >  SRR4302537.315311/1‑94 (MQ=60)

                                                                                     CTAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAAAATGTATGTAAACCTATCGCACATGGctt         >  SRR4302537.3517241/1‑91 (MQ=60)

                                                                                      TAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTAT        <  SRR4302537.5676111/94‑1 (MQ=60)

                                                                                      TAAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTAT        <  SRR4302537.643560/94‑1 (MQ=60)

                                                                                       AAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTTTGCGAAATATGTACGTAcgcccatcccccatggttttt       >  SRR4302537.4237909/1‑73 (MQ=60)

                                                                                       AAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATG       <  SRR4302537.4157255/94‑1 (MQ=60)

                                                                                       AAGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATG       <  SRR4302537.5815883/94‑1 (MQ=60)

                                                                                        AGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGC      <  SRR4302537.5538835/94‑1 (MQ=60)

                                                                                        AGGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGC      <  SRR4302537.249196/94‑1 (MQ=60)

                                                                                         GGTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCC     <  SRR4302537.4190520/94‑1 (MQ=60)

                                                                                          GTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCG    <  SRR4302537.134617/94‑1 (MQ=60)

                                                                                          GTCGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCG    <  SRR4302537.4743539/94‑1 (MQ=60)

                                                                                            CGCCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCGTGTGGTATGTGAAATATGTACGgtacactatcgcacataggtgtgccgtg  >  SRR4302537.1763973/1‑66 (MQ=60)

CCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCATGCGCGTCGATGCCATTGCTAAGGTCACCGGGCGGGCACGATATACTGACGATTATGTTATGGCGGGCATGTGTTATGCGAAATATGTACGTAGCCCTATCGCACATGGTTATGCCGTA  >  NC_000913/2998301‑2998486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`