Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,108,438 C→A noncoding (56/76 nt) pheV → tRNA‑Phe

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,108,4380CA100.0% 1542.1 / NA 408noncoding (56/76 nt)pheVtRNA‑Phe
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (174/234);  total (174/234)

Only 100 of 413 total aligned reads displayed.

ACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAA  >  NC_000913/3108347‑3108528
                                                                                           |                                                                                          
 cgagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAt                                                                                         >  2:7500983/1‑94 (MQ=255)
 cgagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAt                                                                                         <  1:8660726/94‑1 (MQ=255)
 cgagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAt                                                                                         >  2:1085710/1‑94 (MQ=255)
 cgagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAt                                                                                         <  2:5119640/94‑1 (MQ=255)
  gagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAtt                                                                                        >  1:10286209/1‑94 (MQ=255)
  gagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAtt                                                                                        <  1:3979757/94‑1 (MQ=255)
  gagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAtt                                                                                        >  2:6995455/1‑94 (MQ=255)
  gagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGAtt                                                                                        <  2:5043268/94‑1 (MQ=255)
   agacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTc                                                                                       <  2:7885191/94‑1 (MQ=255)
    gacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTcc                                                                                      >  2:2105472/1‑94 (MQ=255)
    gacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTcc                                                                                      <  1:1740676/94‑1 (MQ=255)
     acgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCg                                                                                     <  1:341846/94‑1 (MQ=255)
      cgagGCGCATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGa                                                                                    >  1:6536480/1‑94 (MQ=255)
       gatgCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAg                                                                                   >  1:7357522/4‑94 (MQ=255)
       gagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAg                                                                                   <  1:3946399/94‑1 (MQ=255)
       gagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAg                                                                                   <  1:507280/94‑1 (MQ=255)
        agGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGt                                                                                  <  1:7817069/94‑1 (MQ=255)
         ggCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTc                                                                                 >  2:3807577/1‑94 (MQ=255)
         ggCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTc                                                                                 >  2:10202745/1‑94 (MQ=255)
         ggCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTc                                                                                 >  1:6197615/1‑94 (MQ=255)
          gCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTcc                                                                                <  2:6830122/94‑1 (MQ=255)
          gCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTcc                                                                                <  1:10503968/94‑1 (MQ=255)
            gAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCgg                                                                              <  2:4820317/94‑1 (MQ=255)
            gAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCgg                                                                              <  2:10004665/94‑1 (MQ=255)
              aTCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGCTTCCGGGc                                                                            >  2:7083600/1‑94 (MQ=255)
              aTCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGc                                                                            >  1:5130199/1‑94 (MQ=21)
              aTCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGc                                                                            >  2:2416482/1‑94 (MQ=21)
                aaGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATGGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGcac                                                                          <  1:4353699/93‑1 (MQ=9)
                     ttAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTa                                                                     >  1:2592768/1‑94 (MQ=18)
                      tAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTaa                                                                    >  2:3331222/1‑94 (MQ=21)
                       taTGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAAt                                                                   <  2:8469504/93‑1 (MQ=25)
                        aTGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAAtt                                                                  <  2:4069499/94‑1 (MQ=255)
                        aTGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAAtt                                                                  >  1:2957301/1‑94 (MQ=37)
                        aTGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGCCACCACTAAtt                                                                  >  2:1541571/1‑94 (MQ=255)
                         tGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTc                                                                 >  1:4972668/1‑94 (MQ=255)
                           cgcCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCtt                                                               >  1:4773534/1‑94 (MQ=255)
                           cgcCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCtt                                                               >  1:10051336/1‑94 (MQ=255)
                           cgcCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCtt                                                               >  1:9918455/1‑94 (MQ=255)
                             ccccGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGNGTCCGGGCACCACTAATTCTTaa                                                             >  2:10471674/1‑94 (MQ=255)
                              cccGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAg                                                            <  2:2793111/94‑1 (MQ=255)
                              cccGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAg                                                            <  1:5266199/94‑1 (MQ=255)
                                cGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGaa                                                          >  2:3225205/1‑94 (MQ=255)
                                cGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGaa                                                          >  2:9142269/1‑94 (MQ=255)
                                   tGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAAccc                                                       <  1:9194117/94‑1 (MQ=255)
                                     cccGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGc                                                     >  1:6372640/1‑94 (MQ=255)
                                      ccGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGcc                                                    >  1:3486966/1‑94 (MQ=255)
                                       cGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGccc                                                   >  2:8587610/1‑94 (MQ=255)
                                        ggATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCca                                                  >  1:3758819/1‑94 (MQ=255)
                                        ggATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCca                                                  <  1:1564200/94‑1 (MQ=255)
                                            aGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAg                                              <  1:2149795/94‑1 (MQ=255)
                                              gtCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGc                                            <  1:9013756/93‑1 (MQ=255)
                                              cTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGc                                            <  2:3486744/94‑1 (MQ=255)
                                               tCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCg                                           <  2:10391056/94‑1 (MQ=255)
                                                cAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCgg                                          <  1:1085710/94‑1 (MQ=255)
                                                  gTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGt                                        <  2:1886192/94‑1 (MQ=255)
                                                   tCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCgggct                                       <  1:6476204/94‑3 (MQ=255)
                                                    cGGTAGAGCAGGGGATTGAAAATCCCCATGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGttt                                      >  1:1215810/1‑94 (MQ=255)
                                                      gTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGttttt                                    <  1:5643539/94‑1 (MQ=255)
                                                        agagCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTgt                                  >  2:8803878/1‑93 (MQ=255)
                                                        agagCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGc                                  <  1:5459885/94‑1 (MQ=255)
                                                        agagCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGc                                  >  1:5702368/1‑94 (MQ=255)
                                                         gagCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCt                                 <  2:548103/94‑1 (MQ=255)
                                                         gagCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCt                                 <  2:6053342/94‑1 (MQ=255)
                                                          agCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCtt                                >  2:1752533/1‑94 (MQ=255)
                                                          agCAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCtt                                <  1:5391405/94‑1 (MQ=255)
                                                            cAGGGGATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCtttt                              <  2:938500/94‑1 (MQ=255)
                                                              ggggATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTgg                            >  2:5741710/1‑94 (MQ=255)
                                                              ggggATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTgg                            <  2:591955/94‑1 (MQ=255)
                                                              ggggATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTgg                            <  2:5519563/94‑1 (MQ=255)
                                                               gggATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGa                           <  1:7599992/94‑1 (MQ=255)
                                                                 gATTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATc                         <  2:9520061/94‑1 (MQ=255)
                                                                  aTTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCt                        >  2:8199874/1‑94 (MQ=255)
                                                                  aTTGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCt                        <  2:4557754/94‑1 (MQ=255)
                                                                   ttGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTg                       >  2:1336890/1‑94 (MQ=255)
                                                                   ttGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTg                       >  1:2844612/1‑94 (MQ=255)
                                                                    tGAAAATCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGAACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTgc                      >  2:3105051/1‑93 (MQ=255)
                                                                        aaTCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAAt                  <  2:6368570/94‑1 (MQ=255)
                                                                         aTCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATa                 >  1:5861652/1‑94 (MQ=255)
                                                                          tCCCCGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATaa                <  2:7307014/94‑1 (MQ=255)
                                                                           ccccGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAc               <  1:9725395/94‑1 (MQ=255)
                                                                           ccccGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAc               >  2:7762175/1‑94 (MQ=255)
                                                                            cccGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAcc              <  1:2362397/94‑1 (MQ=255)
                                                                            cccGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAcc              >  2:9250085/1‑94 (MQ=255)
                                                                            cccGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAcc              <  2:2224813/94‑1 (MQ=255)
                                                                             ccGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGCTTTTGCTTTTGGATCTGACAATAACCt             >  2:7151221/1‑94 (MQ=255)
                                                                              cGTGTCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCtt            <  2:8940843/94‑1 (MQ=255)
                                                                               gtgtCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTc           <  1:1956238/94‑1 (MQ=255)
                                                                               gtgtCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTc           <  1:8452411/94‑1 (MQ=255)
                                                                                tgtCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCa          <  1:3692920/94‑1 (MQ=255)
                                                                                tgtCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCa          <  1:4196242/94‑1 (MQ=255)
                                                                                 gtCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCAc         >  1:9557913/1‑94 (MQ=255)
                                                                                  tCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACg        >  1:7705550/1‑94 (MQ=255)
                                                                                  tCCTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACg        <  1:2230385/94‑1 (MQ=255)
                                                                                    cTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaa      <  1:7951390/94‑1 (MQ=255)
                                                                                    cTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaa      <  2:521669/94‑1 (MQ=255)
                                                                                    cTTGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaa      <  1:6722814/94‑1 (MQ=255)
                                                                                     ttGGTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaaa     <  2:3550500/94‑1 (MQ=255)
                                                                                       ggTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaaaaa   <  1:6929331/94‑1 (MQ=255)
                                                                                        gTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaaaaaa  <  2:8293062/94‑1 (MQ=255)
                                                                                        gTTAGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaaaaaa  >  2:9679606/1‑94 (MQ=255)
                                                                                           |                                                                                          
ACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAA  >  NC_000913/3108347‑3108528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 246 total aligned reads displayed.
ATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTT  >  NC_000913/3108537‑3108723
                                                                                             |                                                                                             
ATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCA                                                                                               >  SRR4302545.2751696/1‑94 (MQ=60)
ATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCA                                                                                               >  SRR4302545.792626/1‑94 (MQ=60)
 TAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCAC                                                                                              >  SRR4302545.5666179/1‑94 (MQ=60)
 TAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCAC                                                                                              >  SRR4302545.1259524/1‑94 (MQ=60)
 TAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCAC                                                                                              <  SRR4302545.3412644/94‑1 (MQ=60)
 TAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCAC                                                                                              <  SRR4302545.2626068/94‑1 (MQ=60)
 TAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCAC                                                                                              >  SRR4302545.7956897/1‑94 (MQ=60)
  AAAGTCTGGGGGAGTTCCTCTCGACACGTTAACGAGAGTAATTTTATTGATATTAAGCTCCTGATACTTTGCCCCCGTCCAAACACCAGCCACT                                                                                             <  SRR4302545.9571146/94‑1 (MQ=60)
    AGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGC                                                                                           >  SRR4302545.8370920/1‑94 (MQ=60)
    AGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGC                                                                                           >  SRR4302545.3624091/1‑94 (MQ=60)
     GTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCA                                                                                          <  SRR4302545.5109954/94‑1 (MQ=60)
     GTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCA                                                                                          >  SRR4302545.5914343/1‑94 (MQ=60)
      TCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTCCCCCCGTCCAAACTCCAGCCACTTCAC                                                                                         <  SRR4302545.7594297/94‑1 (MQ=60)
       CTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACA                                                                                        >  SRR4302545.8984015/1‑94 (MQ=60)
       CTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACA                                                                                        >  SRR4302545.8081774/1‑94 (MQ=60)
        TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT                                                                                       <  SRR4302545.2383306/94‑1 (MQ=60)
        TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT                                                                                       <  SRR4302545.7188432/94‑1 (MQ=60)
        TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT                                                                                       >  SRR4302545.8310647/1‑94 (MQ=60)
        TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT                                                                                       >  SRR4302545.10000405/1‑94 (MQ=60)
        TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT                                                                                       <  SRR4302545.8470388/94‑1 (MQ=60)
         GGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATT                                                                                      <  SRR4302545.8258494/94‑1 (MQ=60)
         GGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATT                                                                                      >  SRR4302545.9281460/1‑94 (MQ=60)
         GGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATT                                                                                      <  SRR4302545.815304/94‑1 (MQ=60)
            GGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCACCCACTGCACATTCAC                                                                                   >  SRR4302545.10256708/1‑94 (MQ=60)
             GAATTTCTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATTCTTGCCCCCCGTCCAACCTCCAGCCACTGCACATTCTCC                                                                                  <  SRR4302545.5546147/94‑1 (MQ=60)
             GAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACC                                                                                  <  SRR4302545.7288072/94‑1 (MQ=60)
             GAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACC                                                                                  >  SRR4302545.1960569/1‑94 (MQ=60)
             GAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACC                                                                                  >  SRR4302545.9103981/1‑94 (MQ=60)
             GAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACC                                                                                  <  SRR4302545.2475037/94‑1 (MQ=60)
                  TCTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCC                                                                             <  SRR4302545.2576871/94‑1 (MQ=60)
                  ACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTCCCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCC                                                                             <  SRR4302545.6095810/94‑1 (MQ=60)
                  ACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCA                                                                             >  SRR4302545.4574818/1‑94 (MQ=60)
                   CTCTCTCCACGTTAAAGAGAGCAATTTTATTGATATTAATCTACTGATACTTTACCTCCGTCCAGACTCCAGCCACTGCATATTCACCATCCCC                                                                            >  SRR4302545.1427415/1‑94 (MQ=60)
                   CTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCA                                                                            >  SRR4302545.10483523/1‑94 (MQ=60)
                   CTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCA                                                                            >  SRR4302545.7779329/1‑94 (MQ=60)
                   CTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCA                                                                            <  SRR4302545.8465956/94‑1 (MQ=60)
                    TCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAG                                                                           >  SRR4302545.242879/1‑94 (MQ=60)
                    TCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAG                                                                           <  SRR4302545.9558661/94‑1 (MQ=60)
                    TCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAG                                                                           <  SRR4302545.8484374/94‑1 (MQ=60)
                    TCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAG                                                                           <  SRR4302545.8484373/94‑1 (MQ=60)
                     CTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGG                                                                          >  SRR4302545.5140212/1‑94 (MQ=60)
                     CTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGG                                                                          >  SRR4302545.8829748/1‑94 (MQ=60)
                     CTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGG                                                                          >  SRR4302545.21580/1‑94 (MQ=60)
                     CTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGG                                                                          >  SRR4302545.4050908/1‑94 (MQ=60)
                      TCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGC                                                                         >  SRR4302545.4942537/1‑94 (MQ=60)
                       CGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCTAACTCCAGCTACTGCACATTCACCATTCCAGGCT                                                                        >  SRR4302545.9618764/1‑94 (MQ=60)
                       CGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCT                                                                        <  SRR4302545.3729184/94‑1 (MQ=60)
                       CGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCT                                                                        >  SRR4302545.5621976/1‑94 (MQ=60)
                       CGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCT                                                                        <  SRR4302545.920329/94‑1 (MQ=60)
                        GCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTT                                                                       <  SRR4302545.3359937/94‑1 (MQ=60)
                         CCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTC                                                                      >  SRR4302545.4983828/1‑94 (MQ=60)
                          CACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCCTCCCAGGCTTCT                                                                     >  SRR4302545.3321170/1‑94 (MQ=60)
                          CACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCT                                                                     >  SRR4302545.4883739/1‑94 (MQ=60)
                           ACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTC                                                                    <  SRR4302545.7981858/94‑1 (MQ=60)
                            CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCA                                                                   <  SRR4302545.8681652/94‑1 (MQ=60)
                            CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCA                                                                   <  SRR4302545.2715115/94‑1 (MQ=60)
                             GTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAG                                                                  >  SRR4302545.6108967/1‑94 (MQ=60)
                             GTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAG                                                                  >  SRR4302545.1706579/1‑94 (MQ=60)
                              TTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGC                                                                 >  SRR4302545.1389749/1‑94 (MQ=60)
                              TTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGC                                                                 >  SRR4302545.2565996/1‑94 (MQ=60)
                              TTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGC                                                                 <  SRR4302545.1047259/94‑1 (MQ=60)
                               TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA                                                                <  SRR4302545.4262328/94‑1 (MQ=60)
                               TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA                                                                >  SRR4302545.4650284/1‑94 (MQ=60)
                               TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA                                                                >  SRR4302545.2189304/1‑94 (MQ=60)
                               TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA                                                                <  SRR4302545.10830878/94‑1 (MQ=60)
                               TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA                                                                >  SRR4302545.8566021/1‑94 (MQ=60)
                               TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA                                                                >  SRR4302545.8566022/1‑94 (MQ=60)
                               TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA                                                                >  SRR4302545.6498334/1‑94 (MQ=60)
                                AACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGGAG                                                               >  SRR4302545.5176510/1‑94 (MQ=60)
                                AACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAG                                                               >  SRR4302545.1095696/1‑94 (MQ=60)
                                AACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAG                                                               >  SRR4302545.6133179/1‑94 (MQ=60)
                                AACGAGAGGAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAG                                                               >  SRR4302545.4736013/1‑94 (MQ=60)
                                AACGACAGGAATTTTCTTGATATTAATCTCCTGATACTTTACCACCGTACAAACTCCAGCCACTGCACATTCACCATCCCACGCTTCTCAGCAG                                                               >  SRR4302545.1213025/1‑94 (MQ=60)
                                 ACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGC                                                              <  SRR4302545.9410708/94‑1 (MQ=60)
                                 ACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGC                                                              >  SRR4302545.5081900/1‑94 (MQ=60)
                                  CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCA                                                             <  SRR4302545.6831354/94‑1 (MQ=60)
                                   GAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCAC                                                            <  SRR4302545.5996546/94‑1 (MQ=60)
                                    AGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACT                                                           >  SRR4302545.2375406/1‑94 (MQ=60)
                                    AGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACT                                                           <  SRR4302545.3398199/94‑1 (MQ=60)
                                    AGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACT                                                           >  SRR4302545.2111999/1‑94 (MQ=60)
                                    AGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACT                                                           <  SRR4302545.1819916/94‑1 (MQ=60)
                                      AGTAATTTTATTGATATTAATCTCCTGATACTTGACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGA                                                         <  SRR4302545.5640269/94‑1 (MQ=60)
                                        TAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACA                                                       <  SRR4302545.5434167/94‑1 (MQ=60)
                                        TAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACA                                                       <  SRR4302545.3785007/94‑1 (MQ=60)
                                        TAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACA                                                       >  SRR4302545.3046267/1‑94 (MQ=60)
                                        TAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACA                                                       >  SRR4302545.7183865/1‑94 (MQ=60)
                                        TAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCACCCCAGGCTTCTCAGCAGCACTGACA                                                       >  SRR4302545.7183864/1‑94 (MQ=60)
                                         AATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACAT                                                      >  SRR4302545.738141/1‑94 (MQ=60)
                                         AATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACAT                                                      <  SRR4302545.6154336/94‑1 (MQ=60)
                                          ATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATC                                                     >  SRR4302545.4311876/1‑94 (MQ=60)
                                          ATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATC                                                     >  SRR4302545.3542841/1‑94 (MQ=60)
                                          ATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATC                                                     >  SRR4302545.6261180/1‑94 (MQ=60)
                                            TTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAA                                                   <  SRR4302545.4881265/94‑1 (MQ=60)
                                             TTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAT                                                  >  SRR4302545.9893552/1‑94 (MQ=60)
                                             TTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAT                                                  <  SRR4302545.5772535/94‑1 (MQ=60)
                                             TTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAT                                                  <  SRR4302545.10242987/94‑1 (MQ=60)
                                              TATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATT                                                 >  SRR4302545.6636643/1‑94 (MQ=60)
                                              TATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATT                                                 >  SRR4302545.400059/1‑94 (MQ=60)
                                               ATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTT                                                <  SRR4302545.3902132/94‑1 (MQ=60)
                                                 TGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGT                                              <  SRR4302545.2293799/94‑1 (MQ=60)
                                                 TGATATTAAGCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGT                                              <  SRR4302545.10372192/94‑1 (MQ=60)
                                                  GATATTAATCTCCTGATACTTTACCCCGTCCAAAATCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGT                                            >  SRR4302545.8594654/1‑94 (MQ=60)
                                                   ATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGT                                            >  SRR4302545.9738845/1‑94 (MQ=60)
                                                   ATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGT                                            >  SRR4302545.1460827/1‑94 (MQ=60)
                                                   ATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGT                                            >  SRR4302545.9204304/1‑94 (MQ=60)
                                                   ATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGT                                            >  SRR4302545.5178531/1‑94 (MQ=60)
                                                    TATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTC                                           >  SRR4302545.8057711/1‑94 (MQ=60)
                                                      TTAATCTCCTGATCCTTTACCCCCGTCCAAACTCCAGCCACTGCACATTAACCATCCCAGGCTTCTCAGCAGCACTGccaccaattttgtccac                                         >  SRR4302545.10480837/1‑77 (MQ=60)
                                                      TTAATCTCCTGATACTTTACTCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCAC                                         >  SRR4302545.10480835/1‑94 (MQ=60)
                                                       TAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACC                                        >  SRR4302545.1590783/1‑94 (MQ=60)
                                                       TAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACC                                        >  SRR4302545.3678643/1‑94 (MQ=60)
                                                       TAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACC                                        <  SRR4302545.6401606/94‑1 (MQ=60)
                                                        AATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCC                                       >  SRR4302545.7505505/1‑94 (MQ=60)
                                                         ATCTCCTGATACTTTACCCCCGTTCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCG                                      <  SRR4302545.5989354/94‑1 (MQ=60)
                                                         ATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCC                                      >  SRR4302545.5618924/1‑94 (MQ=60)
                                                         AGCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTGCTCAGCAGCACTGACATCAATTTGTGTCACCCA                                      <  SRR4302545.3629078/94‑1 (MQ=60)
                                                          TCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCATTGACATCAATTTGTGTCACCCGC                                     >  SRR4302545.7799519/1‑94 (MQ=60)
                                                          TCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGC                                     >  SRR4302545.2848511/1‑94 (MQ=60)
                                                          TCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGC                                     >  SRR4302545.297498/1‑94 (MQ=60)
                                                           CTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCA                                    <  SRR4302545.5054375/94‑1 (MQ=60)
                                                             CCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGC                                  >  SRR4302545.7263170/1‑94 (MQ=60)
                                                             CCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGC                                  >  SRR4302545.4490552/1‑94 (MQ=60)
                                                              CTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCG                                 >  SRR4302545.268227/1‑94 (MQ=60)
                                                              CTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCG                                 >  SRR4302545.7590638/1‑94 (MQ=60)
                                                              CTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCG                                 <  SRR4302545.1629148/94‑1 (MQ=60)
                                                               TGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGC                                >  SRR4302545.4755327/1‑94 (MQ=60)
                                                                GATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCA                               <  SRR4302545.6459325/94‑1 (MQ=60)
                                                                GATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCA                               <  SRR4302545.3442879/94‑1 (MQ=60)
                                                                GATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCA                               >  SRR4302545.7300707/1‑94 (MQ=60)
                                                                GATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCA                               >  SRR4302545.10302048/1‑94 (MQ=60)
                                                                 ATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCAT                              <  SRR4302545.2825879/94‑1 (MQ=60)
                                                                 ATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGATTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCAT                              >  SRR4302545.10247482/1‑94 (MQ=60)
                                                                  TACTTTACCCCCGTCTAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA                             >  SRR4302545.6588664/1‑94 (MQ=60)
                                                                  TACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA                             <  SRR4302545.3419092/94‑1 (MQ=60)
                                                                  TACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA                             >  SRR4302545.4990231/1‑94 (MQ=60)
                                                                   ACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAT                            >  SRR4302545.6316130/1‑94 (MQ=60)
                                                                   ACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAT                            >  SRR4302545.831989/1‑94 (MQ=60)
                                                                    CTTTACCCCCGTTCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATT                           >  SRR4302545.3304940/1‑94 (MQ=60)
                                                                    CTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATT                           <  SRR4302545.1794463/94‑1 (MQ=60)
                                                                    CTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATT                           >  SRR4302545.9734205/1‑94 (MQ=60)
                                                                     TTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCTCAGCGCATATTT                          <  SRR4302545.10755188/94‑1 (MQ=60)
                                                                     TTTACCCCCGTCCAAACTCCAACCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTT                          >  SRR4302545.7503342/1‑94 (MQ=60)
                                                                      TTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCCGCGCATATTTT                         >  SRR4302545.9256850/1‑94 (MQ=60)
                                                                      TTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTT                         <  SRR4302545.10504114/94‑1 (MQ=60)
                                                                      TTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTT                         >  SRR4302545.5293895/1‑94 (MQ=60)
                                                                       TTCCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTT                        >  SRR4302545.6073725/1‑94 (MQ=60)
                                                                        ACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTC                       >  SRR4302545.6837559/1‑94 (MQ=60)
                                                                        ACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTC                       <  SRR4302545.6543416/94‑1 (MQ=60)
                                                                         CCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCA                      >  SRR4302545.10921475/1‑94 (MQ=60)
                                                                         CCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCA                      >  SRR4302545.1065235/1‑94 (MQ=60)
                                                                         CCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCA                      >  SRR4302545.1204651/1‑94 (MQ=60)
                                                                          CCCCGTCCAAACTCCCGCCACTGCACATTCACCATCCCACGCCTCTCCGCAGCACTGACATCAAATTTTGTCACCCGCAGCGCATATTTTTtct                     >  SRR4302545.2497541/1‑91 (MQ=60)
                                                                          CCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCAT                     >  SRR4302545.8344186/1‑94 (MQ=60)
                                                                          CCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGAAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCAT                     >  SRR4302545.8509395/1‑94 (MQ=60)
                                                                           CCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATC                    >  SRR4302545.1051474/1‑94 (MQ=60)
                                                                           CCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATC                    >  SRR4302545.2148355/1‑94 (MQ=60)
                                                                           CCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATC                    >  SRR4302545.10040537/1‑94 (MQ=60)
                                                                           CCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATC                    <  SRR4302545.5695545/94‑1 (MQ=60)
                                                                            CCGTCCAAACTCCAGCCACTGCACATTCACTATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCC                   >  SRR4302545.3843618/1‑94 (MQ=60)
                                                                            CCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCC                   <  SRR4302545.8422541/94‑1 (MQ=60)
                                                                             CGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCA                  <  SRR4302545.4608701/94‑1 (MQ=60)
                                                                             CGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCA                  <  SRR4302545.9357300/94‑1 (MQ=60)
                                                                             CGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCA                  <  SRR4302545.1046847/94‑1 (MQ=60)
                                                                             CGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCA                  >  SRR4302545.4445107/1‑94 (MQ=60)
                                                                             CGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATACA                  >  SRR4302545.4693126/1‑94 (MQ=60)
                                                                             CGTACAAACCCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCCCTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCA                  <  SRR4302545.6919484/94‑1 (MQ=60)
                                                                              GTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAG                 <  SRR4302545.6976704/94‑1 (MQ=60)
                                                                              GTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAG                 >  SRR4302545.1589897/1‑94 (MQ=60)
                                                                               TCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGT                <  SRR4302545.9713008/94‑1 (MQ=60)
                                                                               TCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGT                <  SRR4302545.3304363/94‑1 (MQ=60)
                                                                                CCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG               <  SRR4302545.4503967/94‑1 (MQ=60)
                                                                                CCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG               <  SRR4302545.9521292/94‑1 (MQ=60)
                                                                                CCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG               >  SRR4302545.10074544/1‑94 (MQ=60)
                                                                                CCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG               >  SRR4302545.8781035/1‑94 (MQ=60)
                                                                                CCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG               >  SRR4302545.10153845/1‑94 (MQ=60)
                                                                                CCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG               >  SRR4302545.10153846/1‑94 (MQ=60)
                                                                                 CAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGC              >  SRR4302545.3547221/1‑94 (MQ=60)
                                                                                 CAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGC              <  SRR4302545.3847557/94‑1 (MQ=60)
                                                                                 CAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGC              <  SRR4302545.3159890/94‑1 (MQ=60)
                                                                                  AAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCG             <  SRR4302545.6746419/94‑1 (MQ=60)
                                                                                  AAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGCGTCACCCGCAGCGCATATTTTTCATCCAGTGCG             <  SRR4302545.9053355/94‑1 (MQ=60)
                                                                                    ACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTT           >  SRR4302545.7959929/1‑94 (MQ=60)
                                                                                    ACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTT           <  SRR4302545.7162685/94‑1 (MQ=60)
                                                                                     CTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTT          <  SRR4302545.7737504/94‑1 (MQ=60)
                                                                                      TCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTA         >  SRR4302545.1814514/1‑94 (MQ=60)
                                                                                      TCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTA         <  SRR4302545.7518156/94‑1 (MQ=60)
                                                                                        CAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAAC       >  SRR4302545.3677607/1‑94 (MQ=60)
                                                                                         AGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC      >  SRR4302545.3613564/1‑94 (MQ=60)
                                                                                         AGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC      <  SRR4302545.10601690/94‑1 (MQ=60)
                                                                                         AGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC      <  SRR4302545.10601691/94‑1 (MQ=60)
                                                                                         AGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC      >  SRR4302545.2397273/1‑94 (MQ=60)
                                                                                          GCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCA     >  SRR4302545.8512064/1‑94 (MQ=60)
                                                                                           CCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCAT    <  SRR4302545.5895875/94‑1 (MQ=60)
                                                                                           CCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCAT    >  SRR4302545.1229771/1‑94 (MQ=60)
                                                                                            CACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATT   <  SRR4302545.4198440/94‑1 (MQ=60)
                                                                                            CACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATT   >  SRR4302545.4060775/1‑94 (MQ=60)
                                                                                            CACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATT   >  SRR4302545.9149478/1‑94 (MQ=60)
                                                                                            CACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATT   >  SRR4302545.7731486/1‑94 (MQ=60)
                                                                                             ACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTT  <  SRR4302545.10197193/94‑1 (MQ=60)
                                                                                             ACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGCTTAACCATTT  >  SRR4302545.4332476/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTT  >  NC_000913/3108537‑3108723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: