Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,108,630 |
G→A |
R172W (CGG→TGG) |
yghD ← |
putative secretion pathway protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,108,630 | 0 | G | A | 99.6%
| 829.5
/ ‑6.0
| 234 | R172W (CGG→TGG) | yghD | putative secretion pathway protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (142/91); minor base T (1/0); total (143/91) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 235 total aligned reads displayed.
AAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC > NC_000913/3108540‑3108719
|
aGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTg < 1:1158077/93‑1 (MQ=255)
aGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTg < 1:943851/93‑1 (MQ=255)
tCTGTGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGca < 2:1548243/93‑1 (MQ=255)
gggggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAt > 1:3782252/1‑93 (MQ=255)
gggggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAt > 2:5814281/1‑93 (MQ=255)
ggggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAtt < 1:4380049/93‑1 (MQ=255)
gggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTc > 1:1701379/1‑93 (MQ=255)
ggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCa > 1:1975864/1‑93 (MQ=255)
gAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCAc < 1:2745605/93‑1 (MQ=255)
aaTTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCAcc > 2:218844/1‑93 (MQ=255)
ttACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTTATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCAt > 2:3554519/1‑93 (MQ=255)
ttACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCAt > 1:1857698/1‑93 (MQ=255)
tACTCTCGCCACGTTATCGAGAGTAATTTTATTGATATTAATCTCCTGATTCTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATc < 2:5971058/93‑1 (MQ=255)
aCTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATcc > 1:1078811/1‑93 (MQ=255)
ctctCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATccc < 2:2361583/93‑1 (MQ=255)
ctcGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTCCCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAg < 2:420981/93‑1 (MQ=255)
ctcGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAg < 2:1890079/93‑1 (MQ=255)
cACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTtc > 1:4258231/1‑93 (MQ=255)
cACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTtc > 1:652836/1‑93 (MQ=255)
cGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTtctc > 1:3521340/1‑93 (MQ=255)
gTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTca < 1:698380/93‑1 (MQ=255)
ttAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTcag > 2:6031402/1‑93 (MQ=255)
aaCGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTcagca < 2:5002572/93‑1 (MQ=255)
aaCGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTcagca > 2:4730374/1‑93 (MQ=255)
aaCGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTcagca > 2:1149394/1‑93 (MQ=255)
aCGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTcagcag < 1:3131261/93‑1 (MQ=255)
aCGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTcagcag < 1:4765345/93‑1 (MQ=255)
gagaGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAgcagca > 2:3863445/1‑93 (MQ=255)
gagaGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAgcagca > 1:4187319/1‑93 (MQ=255)
agagTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCAc < 2:6132239/93‑1 (MQ=255)
gagTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACt > 2:3085502/1‑93 (MQ=255)
gagTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACt > 2:1424292/1‑93 (MQ=255)
gagTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACt < 2:1802138/93‑1 (MQ=255)
gagTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACt > 2:2047738/1‑93 (MQ=255)
gTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGa < 1:91461/93‑1 (MQ=255)
gTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGa > 1:6203127/1‑93 (MQ=255)
tAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGAc > 2:5271506/1‑93 (MQ=255)
aaTTTTATTGATATTAATCTCCTGATACTTTCCCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACa < 1:1893208/93‑1 (MQ=255)
ttttATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATc > 1:5904739/1‑93 (MQ=255)
tttATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCa > 1:515041/1‑93 (MQ=255)
tttATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCa > 1:2186016/1‑93 (MQ=255)
ttATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCaa > 2:4305361/1‑93 (MQ=255)
ttATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCaa > 2:3124630/1‑93 (MQ=255)
tATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAt > 2:3191340/1‑93 (MQ=255)
ttGATATTTATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAttt > 2:2328966/1‑93 (MQ=255)
tGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtg < 2:566895/93‑1 (MQ=255)
tatatTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgt < 2:634190/92‑1 (MQ=255)
gATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgt < 2:2877390/93‑1 (MQ=255)
atatTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgtg > 2:4667583/1‑93 (MQ=255)
atatTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgtg > 1:4701908/1‑93 (MQ=255)
tatTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTgtgt > 2:347381/1‑93 (MQ=255)
aaTCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTTTCAcc < 2:4090885/93‑1 (MQ=255)
aTCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCAccc < 1:276231/93‑1 (MQ=255)
aTCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCAccc > 1:2547441/1‑93 (MQ=255)
tctcCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCg > 2:3971361/1‑93 (MQ=255)
ccTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAg > 1:1777918/1‑93 (MQ=255)
cTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAgc > 2:3359331/1‑93 (MQ=255)
cTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAgc > 2:4822820/1‑93 (MQ=255)
cTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGCGTCACCCGCAgc > 2:2675393/1‑93 (MQ=255)
aTACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCa > 2:4592024/1‑93 (MQ=255)
aTACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCa < 2:2302744/93‑1 (MQ=255)
tACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCat > 1:5609131/1‑93 (MQ=255)
aCTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 2:671001/93‑1 (MQ=255)
aCTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCata < 1:3717080/93‑1 (MQ=255)
cTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCatat > 2:5351777/1‑93 (MQ=255)
cTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCatat > 1:4014759/1‑93 (MQ=255)
cTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCatat > 1:4407776/1‑93 (MQ=255)
tttACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAtt > 2:2956362/1‑93 (MQ=255)
tttACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAtt < 2:2517614/93‑1 (MQ=255)
tttACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAtt > 1:143628/1‑93 (MQ=255)
ttACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAttt < 1:358777/93‑1 (MQ=255)
tACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAtttt < 2:4460912/93‑1 (MQ=255)
tACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGATTCTCAGCAGCACTGACATCAATTTGTGTCACCAGCAGCGCATAtttt > 1:2036452/1‑93 (MQ=255)
aCCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAttttt > 1:3272534/1‑93 (MQ=255)
cccccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTc > 2:2552582/1‑93 (MQ=255)
cccccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTc < 1:4075067/93‑1 (MQ=255)
cccccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTc > 1:5169735/1‑93 (MQ=255)
ccccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCa > 2:6267475/1‑93 (MQ=255)
ccccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCa > 1:5546151/1‑93 (MQ=255)
ccccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCa < 1:3704879/93‑1 (MQ=255)
cccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCAt > 2:4901769/1‑93 (MQ=255)
ccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATc < 1:5423617/93‑1 (MQ=255)
ccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATc > 2:5348224/1‑93 (MQ=255)
ccGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATc > 1:3237305/1‑93 (MQ=255)
cGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATcc > 1:5741798/1‑93 (MQ=255)
cGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATcc > 1:2249809/1‑93 (MQ=255)
gTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCa > 1:2913166/1‑93 (MQ=255)
gTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCa < 2:1315019/93‑1 (MQ=255)
tCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAg > 1:1127140/1‑93 (MQ=255)
tCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAg < 2:5328902/93‑1 (MQ=255)
tCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAg < 2:216907/93‑1 (MQ=255)
ccAACCTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGt < 2:5132666/93‑1 (MQ=255)
ccAACCTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGt < 1:2056035/93‑1 (MQ=255)
aCTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGt > 2:5604991/1‑93 (MQ=255)
cTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGtt < 1:6442211/93‑1 (MQ=255)
cTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGtt < 1:2124151/93‑1 (MQ=255)
cTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGtt > 2:831285/1‑93 (MQ=255)
tCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGttt < 2:6092010/93‑1 (MQ=255)
ccAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTa > 2:1868039/1‑93 (MQ=255)
gCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAAcc > 1:4981613/1‑93 (MQ=255)
|
AAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC > NC_000913/3108540‑3108719
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATT > NC_000913/3108537‑3108722
|
ATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCA > SRR4302537.1461679/1‑94 (MQ=60)
TAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCAC > SRR4302537.6174393/1‑94 (MQ=60)
AAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACT > SRR4302537.2733104/1‑94 (MQ=60)
AAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGGAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACT > SRR4302537.6350560/1‑94 (MQ=60)
AGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGC < SRR4302537.950372/94‑1 (MQ=60)
AGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGC > SRR4302537.3705250/1‑94 (MQ=60)
AGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGC < SRR4302537.1166135/94‑1 (MQ=60)
GTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCA > SRR4302537.329200/1‑94 (MQ=60)
GTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCA < SRR4302537.1971416/94‑1 (MQ=60)
TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT > SRR4302537.3808810/1‑94 (MQ=60)
TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT > SRR4302537.5566730/1‑94 (MQ=60)
TGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACAT < SRR4302537.691247/94‑1 (MQ=60)
GGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTC < SRR4302537.4410280/94‑1 (MQ=60)
GGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTC > SRR4302537.1713272/1‑94 (MQ=60)
GGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTC > SRR4302537.924679/1‑94 (MQ=60)
GGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCA > SRR4302537.1989597/1‑94 (MQ=60)
GAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACC < SRR4302537.2764755/94‑1 (MQ=60)
ATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCAT > SRR4302537.1870637/1‑94 (MQ=60)
ATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCAT > SRR4302537.328470/1‑94 (MQ=60)
TTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATC > SRR4302537.3793996/1‑94 (MQ=60)
TACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCC < SRR4302537.5848896/94‑1 (MQ=60)
TACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCC > SRR4302537.1086253/1‑94 (MQ=60)
ACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCC > SRR4302537.2796754/1‑94 (MQ=60)
CTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCA < SRR4302537.3903162/94‑1 (MQ=60)
CTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCA > SRR4302537.5706555/1‑94 (MQ=60)
CTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCA > SRR4302537.366768/1‑94 (MQ=60)
TCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAG > SRR4302537.1845875/1‑94 (MQ=60)
CTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGG < SRR4302537.5625148/94‑1 (MQ=60)
GCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTT < SRR4302537.4412569/94‑1 (MQ=60)
GCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTT > SRR4302537.5093019/1‑94 (MQ=60)
CCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTC > SRR4302537.657288/1‑94 (MQ=60)
CCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTC > SRR4302537.4287822/1‑94 (MQ=60)
CCACGTTAACGAGAGGAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTT > SRR4302537.2101778/1‑94 (MQ=60)
ACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTC > SRR4302537.1341194/1‑94 (MQ=60)
ACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTC > SRR4302537.3546250/1‑94 (MQ=60)
CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCA > SRR4302537.5254275/1‑94 (MQ=60)
GTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAG < SRR4302537.1878808/94‑1 (MQ=60)
GTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAG < SRR4302537.703163/94‑1 (MQ=60)
TTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGC < SRR4302537.2060799/94‑1 (MQ=60)
TAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCA < SRR4302537.1830665/94‑1 (MQ=60)
AACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAG < SRR4302537.603040/94‑1 (MQ=60)
ACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGC < SRR4302537.4798254/94‑1 (MQ=60)
ACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGC > SRR4302537.2694414/1‑94 (MQ=60)
ACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGC < SRR4302537.3153221/94‑1 (MQ=60)
ACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGC > SRR4302537.4099088/1‑94 (MQ=60)
CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCA > SRR4302537.4742407/1‑94 (MQ=60)
CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCA > SRR4302537.4216557/1‑94 (MQ=60)
CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCA < SRR4302537.894609/94‑1 (MQ=60)
AGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACT > SRR4302537.2185652/1‑94 (MQ=60)
AGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGA > SRR4302537.1402205/1‑94 (MQ=60)
AGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGA > SRR4302537.6245881/1‑94 (MQ=60)
GTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGAC < SRR4302537.92128/94‑1 (MQ=60)
GTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGAC > SRR4302537.2029636/1‑94 (MQ=60)
AATTTTATTGATATTAATCTCCTGATACTTTCCCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACAT < SRR4302537.1906364/94‑1 (MQ=60)
ATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATC > SRR4302537.5945257/1‑94 (MQ=60)
ATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATC > SRR4302537.3737505/1‑94 (MQ=60)
TTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCA > SRR4302537.518584/1‑94 (MQ=60)
TTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCA > SRR4302537.2201415/1‑94 (MQ=60)
TTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAA < SRR4302537.1152310/94‑1 (MQ=60)
TTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAT > SRR4302537.4471868/1‑94 (MQ=60)
TATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATT > SRR4302537.6487614/1‑94 (MQ=60)
TATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATT > SRR4302537.1622691/1‑94 (MQ=60)
ATTGATATTAATCTCCTGATACTTTCCCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTT < SRR4302537.2772194/94‑1 (MQ=60)
ATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTGACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTT > SRR4302537.6348182/1‑94 (MQ=60)
ATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTT < SRR4302537.4254111/94‑1 (MQ=60)
TGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGT < SRR4302537.344539/94‑1 (MQ=60)
GATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTG > SRR4302537.4734435/1‑94 (MQ=60)
GATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTG > SRR4302537.3016099/1‑94 (MQ=60)
ATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGT > SRR4302537.4159133/1‑94 (MQ=60)
TATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTC > SRR4302537.2239090/1‑94 (MQ=60)
AATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCC > SRR4302537.2565286/1‑94 (MQ=60)
AATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCC > SRR4302537.4262338/1‑94 (MQ=60)
ATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCG < SRR4302537.278165/94‑1 (MQ=60)
TCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAG > SRR4302537.1110970/1‑94 (MQ=60)
TCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAG > SRR4302537.1790306/1‑94 (MQ=60)
TCCTGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAG > SRR4302537.2014102/1‑94 (MQ=60)
TGATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGC > SRR4302537.5654556/1‑94 (MQ=60)
ATACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCAT > SRR4302537.5647482/1‑94 (MQ=60)
ACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAT > SRR4302537.4438197/1‑94 (MQ=60)
ACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAT > SRR4302537.4042872/1‑94 (MQ=60)
ACTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAT < SRR4302537.3743208/94‑1 (MQ=60)
CTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATT > SRR4302537.144649/1‑94 (MQ=60)
CTTTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATT > SRR4302537.4554024/1‑94 (MQ=60)
TTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTT < SRR4302537.361269/94‑1 (MQ=60)
TTACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGATTCTCAGCAGCACTGACATCAATTTGTGTCACCAGCAGCGCATATTTT > SRR4302537.2050649/1‑94 (MQ=60)
TACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTT > SRR4302537.3295631/1‑94 (MQ=60)
ACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTC > SRR4302537.2364597/1‑94 (MQ=60)
ACCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTC > SRR4302537.5205337/1‑94 (MQ=60)
CCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCA < SRR4302537.4103521/94‑1 (MQ=60)
CCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCA > SRR4302537.5584022/1‑94 (MQ=60)
CCCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCA > SRR4302537.502858/1‑94 (MQ=60)
CCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCAT > SRR4302537.4290525/1‑94 (MQ=60)
CCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCAT > SRR4302537.5571679/1‑94 (MQ=60)
CCCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCAT < SRR4302537.3730937/94‑1 (MQ=60)
CCCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATC > SRR4302537.3260123/1‑94 (MQ=60)
CCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCC < SRR4302537.5460586/94‑1 (MQ=60)
CCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCC > SRR4302537.5781112/1‑94 (MQ=60)
CCGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCC > SRR4302537.2265688/1‑94 (MQ=60)
CGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCA < SRR4302537.823805/94‑1 (MQ=60)
CGTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCA > SRR4302537.2933629/1‑94 (MQ=60)
GTCCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAG > SRR4302537.1134958/1‑94 (MQ=60)
CCAACCTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG < SRR4302537.2070466/94‑1 (MQ=60)
CCAAACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTG < SRR4302537.3916669/94‑1 (MQ=60)
ACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTT < SRR4302537.491875/94‑1 (MQ=60)
ACTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTT < SRR4302537.5188781/94‑1 (MQ=60)
CTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTT < SRR4302537.2139094/94‑1 (MQ=60)
CTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTT < SRR4302537.6485927/94‑1 (MQ=60)
CTCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTT < SRR4302537.3579443/94‑1 (MQ=60)
TCCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTA > SRR4302537.3253875/1‑94 (MQ=60)
CCAGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAA < SRR4302537.2982666/94‑1 (MQ=60)
AGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC > SRR4302537.5015948/1‑94 (MQ=60)
AGCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACC < SRR4302537.1783122/94‑1 (MQ=60)
GCCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCA < SRR4302537.218997/94‑1 (MQ=60)
CCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCAT < SRR4302537.1568164/94‑1 (MQ=60)
CCACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCAT < SRR4302537.1136831/94‑1 (MQ=60)
CACTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATT < SRR4302537.331089/94‑1 (MQ=60)
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ATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATT > NC_000913/3108537‑3108722
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
