Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,008,393 C→G A159G (GCT→GGT)  b4555 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,008,3930CG100.0% 729.5 / NA 211A159G (GCT→GGT) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (97/114);  total (97/114)

Only 100 of 217 total aligned reads displayed.

GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAA‑GGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT  >  NC_000913/4008308‑4008459
                                                                                        |                                                                               
 gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa                                                                      >  2:8144401/1‑94 (MQ=255)
 gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa                                                                      <  1:5480840/94‑1 (MQ=255)
 gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa                                                                      <  1:576873/94‑1 (MQ=255)
  cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag                                                                     >  2:3114285/1‑93 (MQ=255)
  cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag                                                                     <  2:8658974/94‑2 (MQ=255)
    aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                                   <  2:921162/94‑4 (MQ=255)
    aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                                   <  2:7118894/94‑4 (MQ=255)
     tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaaa                                                                  >  2:5465637/1‑90 (MQ=255)
     tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaaa                                                                  <  2:3642056/94‑5 (MQ=255)
                                     gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  >  2:3936957/1‑94 (MQ=255)
                                     gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  <  1:4516742/94‑1 (MQ=255)
                                     gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AAGAATCTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                  <  1:502475/94‑1 (MQ=255)
                                      tCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                 <  1:7816325/94‑2 (MQ=255)
                                       cTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                <  2:3159666/94‑3 (MQ=255)
                                       cTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                <  2:7792987/94‑3 (MQ=255)
                                       cTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                >  2:9026576/1‑92 (MQ=255)
                                       cTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                >  2:6194405/1‑92 (MQ=255)
                                        tGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                               >  1:8323723/1‑91 (MQ=255)
                                        tGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                               >  1:4852832/1‑91 (MQ=255)
                                        tGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                               <  1:9467560/94‑4 (MQ=255)
                                        tGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                               <  2:6631985/94‑4 (MQ=255)
                                         ggAAGTGATGGCGGTCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                              <  2:3969802/94‑5 (MQ=255)
                                         ggAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                              <  2:8511693/94‑5 (MQ=255)
                                               gATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        <  2:8893080/94‑1 (MQ=255)
                                               gATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        <  1:1219882/94‑1 (MQ=255)
                                               gATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        <  1:10280941/94‑1 (MQ=255)
                                               gATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        <  2:1403660/94‑1 (MQ=255)
                                               gATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        >  1:10380994/1‑94 (MQ=255)
                                               gATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg                        >  1:7931245/1‑94 (MQ=255)
                                               gATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGACTGAAGGATTGTATTGCGTTTGGTGACggg                        >  2:4202765/1‑94 (MQ=255)
                                                aTGGCGGGCGGCGTTTCAAAA‑AGCCATGCGCTGGGAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACgggg                       >  2:4647869/1‑93 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGag                      >  2:716483/1‑93 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGag                      >  2:1347562/1‑93 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  1:10271385/94‑1 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  1:9780329/94‑1 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      >  2:2004704/1‑94 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      >  2:2360484/1‑94 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      >  1:7783819/1‑94 (MQ=255)
                                                 tGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                      <  1:3868845/94‑1 (MQ=255)
                                                  ggcgggcgGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                     >  2:7409542/1‑94 (MQ=255)
                                                   gcgggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa                    >  1:7225388/1‑94 (MQ=255)
                                                   gcgggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa                    <  2:4537753/94‑1 (MQ=255)
                                                    cgggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   <  2:9856631/94‑1 (MQ=255)
                                                    cgggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   >  1:3470749/1‑94 (MQ=255)
                                                    cgggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   >  2:2262793/1‑94 (MQ=255)
                                                    cgggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                   <  2:2803961/94‑1 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaag                  >  2:1684731/1‑93 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  >  1:8969353/1‑94 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  1:1928675/94‑1 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  2:6723938/94‑1 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  2:6050420/94‑1 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  2:5461396/94‑1 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  2:4506449/94‑1 (MQ=255)
                                                     gggcggCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                  <  2:10164761/94‑1 (MQ=255)
                                                      ggcggcGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                 <  2:5256298/94‑1 (MQ=255)
                                                      ggcggcGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                 >  2:3712704/1‑94 (MQ=255)
                                                      ggcggcGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                 <  2:799367/94‑1 (MQ=255)
                                                       gcggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                >  2:6573983/1‑94 (MQ=255)
                                                       gcggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                <  1:9298965/94‑1 (MQ=255)
                                                       gcggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                >  1:2160045/1‑94 (MQ=255)
                                                        cggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGCAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               >  2:492205/1‑94 (MQ=255)
                                                        cggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACATCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               <  2:5669141/94‑1 (MQ=255)
                                                        cggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               <  1:614204/94‑1 (MQ=255)
                                                        cggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               <  1:5141157/94‑1 (MQ=255)
                                                        cggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               <  2:4749689/94‑1 (MQ=255)
                                                        cggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac               >  1:4446341/1‑94 (MQ=255)
                                                        cggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTCCGTTTGGTGACGGGATGAaagac               >  2:8629716/1‑94 (MQ=255)
                                                         ggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg              >  2:2641461/1‑94 (MQ=255)
                                                         ggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg              >  1:4606483/1‑94 (MQ=255)
                                                         ggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg              >  1:4820196/1‑94 (MQ=255)
                                                         ggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg              >  1:5381098/1‑94 (MQ=255)
                                                         ggcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacc              >  2:10361702/1‑93 (MQ=255)
                                                          gcgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc             >  1:1848845/1‑94 (MQ=255)
                                                           cgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGGTGAACGACGcc            >  1:8688707/1‑94 (MQ=255)
                                                           cgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc            <  2:4805074/94‑1 (MQ=255)
                                                           cgTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc            >  2:1882027/1‑94 (MQ=255)
                                                            gTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg           >  1:7662318/1‑94 (MQ=255)
                                                            gTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg           >  2:5958902/1‑94 (MQ=255)
                                                            gTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg           >  2:4874566/1‑94 (MQ=255)
                                                              ttcaaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGCACGACGCCCaa         >  1:2731701/5‑94 (MQ=255)
                                                              ttcaaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa         <  2:3465770/90‑1 (MQ=255)
                                                               tcaaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa        >  2:4588664/4‑94 (MQ=255)
                                                               tcaaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa        <  2:9085979/91‑1 (MQ=255)
                                                                caaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       <  2:58098/92‑1 (MQ=255)
                                                                caaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       <  1:8198576/92‑1 (MQ=255)
                                                                caaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       >  1:2298838/3‑94 (MQ=255)
                                                                caaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt       <  2:415905/92‑1 (MQ=255)
                                                                 aaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg      >  1:3506593/2‑94 (MQ=255)
                                                                 aaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg      <  2:705039/93‑1 (MQ=255)
                                                                 aaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg      >  1:855279/2‑94 (MQ=255)
                                                                 aaaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg      >  1:4787698/2‑94 (MQ=255)
                                                                  aaa‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc     <  1:1012806/94‑1 (MQ=255)
                                                                    a‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   >  2:295532/1‑94 (MQ=255)
                                                                    a‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   <  1:10413929/94‑1 (MQ=255)
                                                                    a‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   >  1:281583/1‑94 (MQ=255)
                                                                    a‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   <  2:4992613/94‑1 (MQ=255)
                                                                    a‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg   <  2:2778904/94‑1 (MQ=255)
                                                                      ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt  <  2:398554/94‑1 (MQ=255)
                                                                      ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt  <  1:6686780/94‑1 (MQ=255)
                                                                      ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt  >  1:3013830/1‑94 (MQ=255)
                                                                                        |                                                                               
GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAA‑GGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT  >  NC_000913/4008308‑4008459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A