Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,400 |
+GAAA |
coding (483/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,398 | 1 | . | A | 100.0%
| 206.9
/ NA
| 59 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (23/36); total (23/36) |
| * | NC_000913 | 4,008,398 | 2 | . | A | 100.0%
| 204.5
/ NA
| 59 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (23/36); total (23/36) |
| * | NC_000913 | 4,008,398 | 3 | . | G | 100.0%
| 204.7
/ NA
| 59 | E161? (GAA→NAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (23/36); total (23/36) |
| * | NC_000913 | 4,008,398 | 4 | . | A | 100.0%
| 207.6
/ NA
| 59 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (23/36); total (23/36) |
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008310‑4008457
||||
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 1:1280000/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:916174/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:602061/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:491565/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:3722069/93‑1 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCC‑AAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:3484754/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:5387331/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 2:4351240/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:4787452/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 2:6281707/93‑3 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa < 1:1513701/93‑4 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 2:6443111/1‑90 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaaa < 2:3015233/93‑5 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:4486244/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:5403718/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 2:3787930/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 2:2774904/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:869479/1‑93 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 2:464874/93‑3 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 2:6138832/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:6016825/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:6016849/1‑91 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg < 1:3506191/93‑4 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 2:3320361/1‑90 (MQ=255)
gAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:3483846/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:4040145/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:1252666/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggg > 2:2507347/1‑89 (MQ=255)
aTGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 1:4940357/93‑1 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:6405431/93‑1 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:1394688/93‑1 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa > 1:2083031/1‑93 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:5796766/93‑1 (MQ=255)
ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:3310173/93‑1 (MQ=255)
ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:303919/93‑1 (MQ=255)
cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGATGGGATGa > 1:4832777/1‑93 (MQ=255)
cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa < 2:5573378/93‑1 (MQ=255)
gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3446146/93‑1 (MQ=255)
gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3417995/93‑1 (MQ=255)
gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 1:4711400/93‑1 (MQ=255)
gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3173286/93‑1 (MQ=255)
ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:4031251/93‑1 (MQ=255)
ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:3439681/93‑1 (MQ=255)
ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac > 1:6362609/1‑93 (MQ=255)
cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:4625671/93‑1 (MQ=255)
cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:1316320/93‑1 (MQ=255)
ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:763229/93‑1 (MQ=255)
ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:1552969/93‑1 (MQ=255)
ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:1044481/1‑93 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:6033668/1‑93 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:5946770/1‑93 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:1426432/1‑93 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg < 2:4952602/93‑1 (MQ=255)
gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:4992638/1‑93 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 1:1552563/1‑93 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 1:426660/93‑1 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:4958176/93‑1 (MQ=255)
cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:5168728/93‑1 (MQ=255)
gTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:2256472/1‑93 (MQ=255)
ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa < 1:6062415/89‑1 (MQ=255)
tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa > 2:5083323/4‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaag < 2:2846134/92‑2 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 1:6035252/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:4617817/2‑93 (MQ=255)
aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg < 1:5923994/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 1:3789541/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc > 2:5226036/1‑93 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 2:1736980/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:6098058/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:82540/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:2452004/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:1120950/93‑1 (MQ=255)
||||
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008310‑4008457
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
