Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,281,296 C→T A396T (GCG→ACG)  yjcG ← putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,281,2960CT98.9% 1636.7 / ‑0.4 444A396T (GCG→ACG) yjcGputative transport protein
Reads supporting (aligned to +/- strand):  ref base C (4/1);  new base T (240/199);  total (244/200)
Fisher's exact test for biased strand distribution p-value = 3.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01

Only 100 of 497 total aligned reads displayed.

TGATTCTCAAACAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGCGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGTGGCG  >  NC_000913/4281205‑4281387
                                                                                           |                                                                                           
tGATTCTCAAACAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTAAAGTTCGGTCgtgc                                                                                           >  1:5482578/1‑94 (MQ=255)
 gATTCTCAAACAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGcc                                                                                          <  2:3739236/94‑1 (MQ=255)
  aTTCTCAAACAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCt                                                                                         >  1:3825299/1‑94 (MQ=255)
   ttCTCAAACAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCtt                                                                                        <  2:5059959/94‑1 (MQ=255)
     ctcAAACAGCACGCCGAGGATAAGCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCtttt                                                                                      >  1:6719119/1‑94 (MQ=255)
       aaaaCAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCtttttt                                                                                    <  2:4363534/93‑1 (MQ=255)
        aaaCAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTg                                                                                   <  1:1253863/94‑1 (MQ=255)
        aaaCAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTg                                                                                   >  1:3917245/1‑94 (MQ=255)
         aaCAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGa                                                                                  >  2:7645388/1‑94 (MQ=255)
         aaCAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGa                                                                                  <  2:2892919/94‑1 (MQ=255)
            aGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGa                                                                               <  1:2847361/94‑1 (MQ=255)
            aGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGa                                                                               <  2:2593968/94‑1 (MQ=255)
             gCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGAc                                                                              <  1:9790135/94‑1 (MQ=255)
               accccGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATTCCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGt                                                                            <  1:3217759/91‑1 (MQ=255)
               aCGCCGAGGATAATCGCAATCACGCCGAGGATCAGTGCGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGt                                                                            >  2:5168252/1‑94 (MQ=255)
               aCGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGt                                                                            <  1:4704594/94‑1 (MQ=255)
                  ccGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAg                                                                         <  2:7815863/94‑1 (MQ=255)
                  ccGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAg                                                                         >  2:1011273/1‑94 (MQ=255)
                   cGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGc                                                                        <  1:7240323/94‑1 (MQ=255)
                   cGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGc                                                                        <  1:4811816/94‑1 (MQ=255)
                       gATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGACTTTTTTGAAGACGTTAGCGtcc                                                                    >  1:8732423/1‑92 (MQ=255)
                        aTAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACa                                                                   >  1:9019421/1‑94 (MQ=255)
                        aTAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACa                                                                   <  2:1977611/94‑1 (MQ=255)
                         tAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACaa                                                                  >  2:1137393/1‑94 (MQ=255)
                         tAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTAAAGACGTTAGCGTACaa                                                                  >  1:2469096/1‑94 (MQ=255)
                          aaTCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAg                                                                 <  2:3372588/94‑1 (MQ=255)
                          aaTCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAg                                                                 <  2:5859702/94‑1 (MQ=255)
                            tCGCAATCACGCGGAGGATCAGTACGGTGATTTTTGATCCCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTc                                                               <  2:9607684/94‑1 (MQ=255)
                            tCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTc                                                               >  2:7197380/1‑94 (MQ=255)
                            tCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTc                                                               >  2:6059850/1‑94 (MQ=255)
                             cGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCa                                                              <  2:822062/94‑1 (MQ=255)
                             cGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCa                                                              <  2:10432287/94‑1 (MQ=255)
                             cGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCa                                                              >  2:8433898/1‑94 (MQ=255)
                              gCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCAt                                                             <  1:8843675/94‑1 (MQ=255)
                              gCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCAt                                                             <  1:10489614/94‑1 (MQ=255)
                               cAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATg                                                            >  1:7146898/1‑94 (MQ=255)
                               cAAGCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATg                                                            <  2:9439742/94‑1 (MQ=255)
                                aaTCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGTCTTTTTTGAAGACGTTAGCGTACAAGTCAtcc                                                           >  1:9295470/1‑92 (MQ=255)
                                aaTCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGc                                                           <  1:10121064/94‑1 (MQ=255)
                                aaTCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTCTTGAAGACGTTAGCGTACAAGTCATGc                                                           >  1:35945/1‑94 (MQ=255)
                                 aTCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCg                                                          <  2:4914660/94‑1 (MQ=255)
                                     cGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAAc                                                      <  1:2047040/94‑1 (MQ=255)
                                     cGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAAc                                                      <  1:6321409/94‑1 (MQ=255)
                                      gCCGAGGAGCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAAcc                                                     <  2:6222840/94‑1 (MQ=255)
                                       ccGAAGATCAGTACGGAGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTACTGCGAAACcg                                                    <  1:9343253/94‑1 (MQ=255)
                                         gAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACcgcg                                                  <  1:444993/94‑1 (MQ=255)
                                         gAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACcgcg                                                  <  2:6939716/94‑1 (MQ=255)
                                         gAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACcgcg                                                  <  1:3503830/94‑1 (MQ=255)
                                          aGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCgg                                                 <  2:2471267/94‑1 (MQ=255)
                                           ggATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGa                                                >  2:1338054/1‑94 (MQ=255)
                                            gATCAGTACGGTGATTTTTGATCCCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGAt                                               <  1:8157809/94‑1 (MQ=255)
                                            gATCAGTACGGTGATTTTTGATCCCCGCAGCTCTTCACGTTCGGTCGCGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGAt                                               <  1:5664100/94‑1 (MQ=255)
                                             aTCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATg                                              <  1:6435364/94‑1 (MQ=255)
                                             aTCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATg                                              >  2:2101495/1‑94 (MQ=255)
                                             aTCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATg                                              >  2:10571018/1‑94 (MQ=255)
                                              tCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATgc                                             <  1:5902017/94‑1 (MQ=255)
                                               cAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATgcg                                            >  1:2347747/1‑94 (MQ=255)
                                                aGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATgcgc                                           >  1:7903437/1‑94 (MQ=255)
                                                 gTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGcgcc                                          <  1:37058/94‑1 (MQ=255)
                                                  tACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGcgccc                                         <  2:7318793/94‑1 (MQ=255)
                                                  tACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGcgccc                                         >  1:1705033/1‑94 (MQ=255)
                                                   aCGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGcgcccg                                        <  2:480740/94‑1 (MQ=255)
                                                    cGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGcgcccgc                                       >  1:7850305/1‑94 (MQ=255)
                                                     ggTGATTTTTGATCCCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGcgcccgcc                                      <  2:6750445/94‑1 (MQ=255)
                                                           ttttGATCCCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTc                                <  1:3145672/94‑1 (MQ=255)
                                                            tttGATACCCGCAGCTCTTCACGTTCGGTCGTGCTTTTTTTAAAGACGTTAGCGTACAAGTCATGCGAACCCGCGGATGCGCCCGCCAGCGTCa                               <  2:8048316/94‑1 (MQ=255)
                                                              tGATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGa                             >  1:7700282/1‑94 (MQ=255)
                                                               gATACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGAc                            >  1:1529317/1‑94 (MQ=255)
                                                                aTACCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGAcc                           >  1:4128837/1‑94 (MQ=255)
                                                                  ccccGCAGCTCTCCAGTTTGGGGCATCCCTTTTTTGAAGACTTTAGCGTACAAGTCTGGCGAAACCGCGGAGGCGCCCGCCAGCGTCAGACCCg                         <  2:884839/93‑1 (MQ=255)
                                                                  aCCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCg                         >  2:6416983/1‑94 (MQ=255)
                                                                  aCCCGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCg                         >  1:10285193/1‑94 (MQ=255)
                                                                   cccGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGc                        >  2:3748344/1‑94 (MQ=255)
                                                                    ccGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCa                       >  1:747299/1‑94 (MQ=255)
                                                                     cGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCaa                      >  1:10615274/1‑94 (MQ=255)
                                                                     cGCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCaa                      >  2:4074294/1‑94 (MQ=255)
                                                                      gcggCTCTTCTCTTCCGGTCGTGCCTTTTTTGAAGACTTTAGCTAACAAGTCATGCGAACCCGCGGATGCGCCCGCCAGCGTCAGACCCGCAac                     <  2:9130736/91‑1 (MQ=255)
                                                                      gCAGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAac                     >  2:1748090/1‑94 (MQ=255)
                                                                       cAGCTCTTCCCGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAACCCGCGGATGCGCCCGCCAGCGTCAGACCCGCAacc                    <  2:5334377/94‑1 (MQ=255)
                                                                        aGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAacca                   >  1:10403498/1‑94 (MQ=255)
                                                                        aGCTCTTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGAGTCAGACCCGCAacca                   >  2:4171009/1‑94 (MQ=255)
                                                                          ctctTCACGTTCGGTGGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAaccacc                 <  2:10337739/94‑1 (MQ=255)
                                                                          ctctTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAaccacc                 >  1:3035499/1‑94 (MQ=255)
                                                                          ctctTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAaccacc                 >  2:3530661/1‑94 (MQ=255)
                                                                           tctTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGAACCGCAaccaccc                >  1:4990280/1‑93 (MQ=255)
                                                                            ctTCCCGTTCGGTCGTCCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAACCCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACcgc               <  2:4726260/94‑1 (MQ=255)
                                                                            ctTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACcgc               >  2:4471087/1‑94 (MQ=255)
                                                                            ctTCACGTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACcgc               >  2:3156209/1‑94 (MQ=255)
                                                                             ttCACGTTCGGTCGTGCTTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACcgcg              <  1:3357950/94‑1 (MQ=255)
                                                                                 ctttCGGTCGTGCCTTTTTTGAAGGCGTTAGCGTACAAGTCATGCGAACCCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGa          <  2:5720070/92‑1 (MQ=255)
                                                                                  gTTCGGTCGTGCTTTTTTTGAAGACGTGAGCGTACAAGTCATGCGAACCCGCGGAGGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGAt         <  2:76023/94‑1 (MQ=255)
                                                                                  gTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGAt         >  2:6256010/1‑94 (MQ=255)
                                                                                  gTTCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGAt         >  2:770328/1‑94 (MQ=255)
                                                                                   ttCGGTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATa        >  1:6527138/1‑94 (MQ=255)
                                                                                     gggTCGTGCCTTTTTTGAAGACGTTAGCGTAAAAGTCATGCAAACCCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGt      <  1:10018413/93‑1 (MQ=255)
                                                                                       gTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGTgg    >  2:3854991/1‑94 (MQ=255)
                                                                                       gTCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGTgg    >  2:1553609/1‑94 (MQ=255)
                                                                                        tCGTGCTTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAACCCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGTGGc   <  1:521244/94‑1 (MQ=255)
                                                                                        tCGTGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGTGGc   >  1:6969683/1‑94 (MQ=255)
                                                                                        tCGTGCCTTTTTTGAAGACGTTACCGTACAAGTCATGCGAAGCCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGTGGc   <  1:4559695/94‑1 (MQ=255)
                                                                                           |                                                                                           
TGATTCTCAAACAGCACGCCGAGGATAATCGCAATCACGCCGAGGATCAGTACGGTGATTTTTGATACCCGCAGCTCTTCACGTTCGGTCGCGCCTTTTTTGAAGACGTTAGCGTACAAGTCATGCGAAACCGCGGATGCGCCCGCCAGCGTCAGACCCGCAACCACCGCGAGGATAGTGGCG  >  NC_000913/4281205‑4281387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A