Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,448,541 |
+C |
intergenic (+46/‑92) |
ytfQ → / → ytfR |
putative LACI‑type transcriptional regulator/YtfR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,448,541 | 1 | . | C | 99.7%
| 1049.9
/ ‑4.4
| 358 | intergenic (+46/‑92) | ytfQ/ytfR | putative LACI‑type transcriptional regulator/YtfR |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (224/133); total (224/134) |
| Fisher's exact test for biased strand distribution p-value = 3.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.79e-01 |
Only 100 of 414 total aligned reads displayed.
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCG‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG > NC_000913/4448448‑4448624
|
gATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCg < 2:7761129/94‑1 (MQ=255)
gATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCg < 1:2123878/94‑1 (MQ=255)
aTACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgc < 2:3356658/94‑2 (MQ=255)
aTACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgc > 2:10097592/1‑93 (MQ=255)
aTACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgc < 2:5142248/94‑2 (MQ=255)
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgcg < 1:292492/94‑3 (MQ=255)
aCCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgcgc > 1:694468/1‑91 (MQ=255)
aCCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgcgc > 2:5839580/1‑91 (MQ=255)
ccGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGTCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgcgcc > 1:5087115/1‑90 (MQ=255)
ccGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCgcgcc > 2:7646303/1‑90 (MQ=255)
gaagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCgg < 1:7817387/94‑1 (MQ=37)
gaagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCgg > 2:88732/1‑94 (MQ=37)
aagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGc > 2:9212147/1‑94 (MQ=37)
agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCg > 2:2331268/1‑94 (MQ=37)
agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCg > 1:3930813/1‑94 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGAt > 2:4240398/1‑94 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATg < 2:3451586/94‑1 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCAGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATg > 2:10508206/1‑94 (MQ=37)
tAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGt > 1:9231664/1‑94 (MQ=37)
agagAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTg > 1:108244/1‑94 (MQ=37)
agagAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTg > 1:7001882/1‑94 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCa > 1:7998760/1‑94 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCa > 1:9526158/1‑94 (MQ=37)
aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCAGCCGGCGATGGTGCACt < 1:1030818/94‑1 (MQ=37)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTg > 2:6629573/1‑94 (MQ=37)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTg > 2:6758288/1‑94 (MQ=37)
aagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGaa < 1:3319332/94‑1 (MQ=37)
aaaaaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGaa < 1:2187407/91‑1 (MQ=25)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGc < 2:5038535/94‑1 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGGGCACTGAAGc > 2:407645/1‑94 (MQ=25)
aaaaaaGGGGGTATTGAGGTTTCCTAGGCCTGATGCCGATTCGTAGGCCGGAAAAGGCGTGCGCG‑C‑CGCATCCGGCGATGGTGCACTGAAGCCt < 1:2538393/94‑1 (MQ=18)
aaaTATGGGGTTTTGAGGGTTGCTATGCCTGCTGCCGATTCGTAGGCCGGATAAGGC‑‑CCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTg < 2:2244461/94‑1 (MQ=25)
atatGGGGTATTGGGGTTTGCTATGCCTGATGCCGTTTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt < 1:1966229/94‑1 (MQ=21)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCGTCCAGCGATGGTGCACTGAAGCCTGAt > 1:5803772/1‑94 (MQ=37)
atatGGGGTATTGAGGGTGGCTATGCCTGATGCCGATTCGTAGGCCGGGTAAGGC‑‑GCTCGCGCCGCATCCGGCGGTGGTGGAGGGAAGCGTggg > 2:5958157/1‑92 (MQ=18)
atatGGGGCATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTgcg > 1:6161037/1‑92 (MQ=25)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATg > 1:6366141/1‑94 (MQ=25)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATg > 1:564387/1‑94 (MQ=25)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCtgctgc > 2:3826756/1‑94 (MQ=25)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGc > 1:5440202/1‑94 (MQ=25)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGc < 2:1372879/94‑1 (MQ=25)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGc < 1:4780639/94‑1 (MQ=25)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg > 2:9550355/1‑94 (MQ=25)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg > 1:7529623/1‑94 (MQ=25)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg > 1:8272201/1‑94 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc < 2:1004034/94‑1 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc < 2:2365331/94‑1 (MQ=25)
ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCAGTGAAGGCTGAAGCGCCg < 1:6473618/94‑1 (MQ=21)
ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg > 2:294603/1‑94 (MQ=25)
ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg > 2:9001335/1‑94 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 2:533867/1‑94 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 2:8548195/1‑94 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt < 1:1659488/94‑1 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt > 2:3267406/1‑94 (MQ=25)
tATTGAAGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt > 1:10524138/1‑94 (MQ=25)
ttGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 1:6774412/94‑1 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc < 2:5607794/94‑1 (MQ=25)
aGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg > 2:7321109/1‑94 (MQ=25)
ggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg > 2:5421520/1‑94 (MQ=25)
gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGt > 2:6193557/1‑94 (MQ=25)
attGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGGCTGATGCGACGCATACCGCGt > 1:186516/2‑94 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 2:2718898/94‑1 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 2:3659030/94‑1 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 2:9486093/94‑1 (MQ=25)
ttATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa < 1:6601921/93‑1 (MQ=21)
cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa < 2:3954081/94‑1 (MQ=25)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt > 1:8506615/1‑94 (MQ=25)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc > 2:127044/1‑94 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa < 2:1661682/94‑1 (MQ=25)
ccTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg > 2:10218505/1‑94 (MQ=21)
ccTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCACATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg > 2:10348549/1‑94 (MQ=21)
cTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:1827688/1‑94 (MQ=21)
cTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 1:9814161/1‑94 (MQ=21)
cTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:6501496/1‑94 (MQ=21)
gATGCGGATTCGTAGGCCCGATAAGCC‑‑CCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCt < 1:1206942/94‑1 (MQ=18)
gtGCCGATTCGTAGGGCTGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa < 2:8319895/93‑1 (MQ=18)
aTGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa < 2:9763785/94‑1 (MQ=21)
aTGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa > 2:873435/1‑94 (MQ=21)
aTGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa < 2:6389324/94‑1 (MQ=21)
gCCGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACt > 1:8646572/1‑94 (MQ=21)
cGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg > 2:4516209/1‑94 (MQ=21)
cGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg > 1:4851514/1‑94 (MQ=18)
cGATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg > 1:7427345/1‑94 (MQ=18)
gATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg < 1:4493567/94‑1 (MQ=21)
gATTCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg > 2:7963667/1‑94 (MQ=21)
tCGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc > 2:6974604/1‑94 (MQ=21)
cGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa > 2:4845806/1‑94 (MQ=21)
cGTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa > 2:1972707/1‑94 (MQ=18)
gTAGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTCAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAc > 1:9324693/1‑94 (MQ=18)
aGGCCGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGc > 1:8943997/1‑94 (MQ=21)
ccGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt < 1:3572656/94‑1 (MQ=21)
cGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa > 2:3060161/1‑94 (MQ=21)
cGGATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa > 1:10086838/1‑94 (MQ=21)
ggATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac < 1:5274418/94‑1 (MQ=21)
ggATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac < 1:8109456/94‑1 (MQ=25)
gATAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTaca < 1:8780699/94‑1 (MQ=25)
aTAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac > 2:8462561/1‑94 (MQ=25)
aTAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac > 2:4570739/1‑94 (MQ=25)
aTAAGGC‑‑GCTCGCGCCGCATCCGGCGATGGCGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac > 2:7112263/1‑94 (MQ=21)
aaGGC‑‑GCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg > 1:3166833/1‑94 (MQ=25)
|
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGC‑‑GCTCG‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG > NC_000913/4448448‑4448624
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
