Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTG  >  NC_000913/2070182‑2070368
                                                                                             |                                                                                             
CGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCG                                                                                               <  SRR4302545.5797352/94‑1 (MQ=60)
 GCGGGGATGCCGTACGCACAACCAGCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGG                                                                                              <  SRR4302545.2562086/94‑1 (MQ=60)
   GGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCG                                                                                            >  SRR4302545.305078/1‑94 (MQ=60)
   GGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCG                                                                                            <  SRR4302545.2452627/94‑1 (MQ=60)
   GGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCG                                                                                            <  SRR4302545.5901392/94‑1 (MQ=60)
     GGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGTGAC                                                                                          <  SRR4302545.8904928/94‑1 (MQ=60)
      GATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACC                                                                                         >  SRR4302545.813142/1‑94 (MQ=60)
      GATGCCGTACGCACAACCAACAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACC                                                                                         <  SRR4302545.10138584/94‑1 (MQ=60)
       ATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCA                                                                                        >  SRR4302545.6330821/1‑94 (MQ=60)
        TGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAG                                                                                       >  SRR4302545.10010291/1‑94 (MQ=60)
          CCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGAC                                                                                     >  SRR4302545.1822044/1‑94 (MQ=60)
           CGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACT                                                                                    <  SRR4302545.4381144/94‑1 (MQ=60)
              ACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTA                                                                                 >  SRR4302545.8719203/1‑94 (MQ=60)
              ACGCACAACCATCAATAAAAACGATCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTA                                                                                 <  SRR4302545.5339407/94‑1 (MQ=60)
               CGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTAC                                                                                >  SRR4302545.364529/1‑94 (MQ=60)
                 CACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACAT                                                                              >  SRR4302545.4528295/1‑94 (MQ=60)
                  ACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATG                                                                             <  SRR4302545.4909887/94‑1 (MQ=60)
                  ACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATG                                                                             <  SRR4302545.9042408/94‑1 (MQ=60)
                   CAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGG                                                                            >  SRR4302545.6859012/1‑94 (MQ=60)
                   CAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGG                                                                            >  SRR4302545.8408784/1‑94 (MQ=60)
                   CAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGG                                                                            >  SRR4302545.8408785/1‑94 (MQ=60)
                    AACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGCACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGG                                                                           >  SRR4302545.9791964/1‑94 (MQ=60)
                      CCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCA                                                                         <  SRR4302545.9814946/94‑1 (MQ=60)
                      CCACCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCA                                                                         <  SRR4302545.4881003/94‑1 (MQ=60)
                        ATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACG                                                                       <  SRR4302545.6095580/94‑1 (MQ=60)
                        ATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACG                                                                       >  SRR4302545.2144080/1‑94 (MQ=60)
                        ATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACG                                                                       <  SRR4302545.3392497/94‑1 (MQ=60)
                         TCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGC                                                                      >  SRR4302545.7001472/1‑94 (MQ=60)
                         TCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGC                                                                      <  SRR4302545.1053709/94‑1 (MQ=60)
                           AATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCAC                                                                    <  SRR4302545.9884200/94‑1 (MQ=60)
                             TAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTG                                                                  <  SRR4302545.5796987/94‑1 (MQ=60)
                               AAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGA                                                                >  SRR4302545.90460/1‑94 (MQ=60)
                               AAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGACACGCACTGGA                                                                >  SRR4302545.8485447/1‑94 (MQ=60)
                                AAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGAT                                                               <  SRR4302545.4950049/94‑1 (MQ=60)
                                AAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGAT                                                               <  SRR4302545.6924610/94‑1 (MQ=60)
                                AAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGAT                                                               <  SRR4302545.5646755/94‑1 (MQ=60)
                                AAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGAT                                                               <  SRR4302545.484076/94‑1 (MQ=60)
                                AAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGAT                                                               <  SRR4302545.484077/94‑1 (MQ=60)
                                 AACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATA                                                              >  SRR4302545.845769/1‑94 (MQ=60)
                                   CGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGTGACCAGACTGTACATGGCCACGCACTGGATcac                                                            >  SRR4302545.7949795/1‑91 (MQ=60)
                                    GTTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCA                                                           <  SRR4302545.716656/94‑1 (MQ=60)
                                    GGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCA                                                           <  SRR4302545.7588674/94‑1 (MQ=60)
                                    GGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCA                                                           <  SRR4302545.6611559/94‑1 (MQ=60)
                                     GTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCAC                                                          <  SRR4302545.4151138/94‑1 (MQ=60)
                                     GTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCAC                                                          <  SRR4302545.9324338/94‑1 (MQ=60)
                                     GTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCAGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCAC                                                          >  SRR4302545.5750676/1‑94 (MQ=60)
                                      TCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACG                                                         <  SRR4302545.4028245/94‑1 (MQ=60)
                                        GCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCT                                                       >  SRR4302545.219363/1‑94 (MQ=60)
                                        GCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCT                                                       <  SRR4302545.4172225/94‑1 (MQ=60)
                                          CAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGA                                                     >  SRR4302545.180038/1‑94 (MQ=60)
                                          CAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGA                                                     >  SRR4302545.5330178/1‑94 (MQ=60)
                                           AGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTATATGGTCACGCACTGGATACCACACTGAA                                                    >  SRR4302545.6141096/1‑94 (MQ=60)
                                            GATTGTGAGAGCTGAAGGAACAGCAAATGCCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAAT                                                   <  SRR4302545.8973912/94‑1 (MQ=60)
                                             ATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATG                                                  <  SRR4302545.2724139/94‑1 (MQ=60)
                                             ATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATG                                                  <  SRR4302545.621194/94‑1 (MQ=60)
                                              TTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGG                                                 >  SRR4302545.9330376/1‑94 (MQ=60)
                                                GTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGG                                               <  SRR4302545.8444738/94‑1 (MQ=60)
                                                GTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGG                                               >  SRR4302545.153282/1‑94 (MQ=60)
                                                 TGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGG                                              <  SRR4302545.10633600/94‑1 (MQ=60)
                                                 TGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGG                                              >  SRR4302545.1417914/1‑94 (MQ=60)
                                                 TGAGAGCTGAAGGAACGGCAAATACCACTGTGGATTATGCCGGCGTTGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGCATGGGGG                                              >  SRR4302545.10705649/1‑94 (MQ=60)
                                                  GAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGA                                             <  SRR4302545.8215324/94‑1 (MQ=60)
                                                   AGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGAT                                            <  SRR4302545.2669805/94‑1 (MQ=60)
                                                      GCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACC                                         <  SRR4302545.6747330/94‑1 (MQ=60)
                                                        TGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAG                                       >  SRR4302545.5491706/1‑94 (MQ=60)
                                                        GGAAGGAACGGCAAATACCACAGAGGTTTATGCCAGCAGAGACCAGACTGTACATGGTCACGGACTGGATACCACGCTGAATGGGGGATACCAG                                       >  SRR4302545.7169011/1‑94 (MQ=60)
                                                         GAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGT                                      >  SRR4302545.1952878/1‑94 (MQ=60)
                                                          AAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTA                                     >  SRR4302545.9909147/1‑94 (MQ=60)
                                                           AGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTAT                                    <  SRR4302545.2118993/94‑1 (MQ=60)
                                                            GGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATG                                   <  SRR4302545.9357257/94‑1 (MQ=60)
                                                              AACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGGTACCAGTATGTG                                 >  SRR4302545.5598563/1‑94 (MQ=60)
                                                              AACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTG                                 >  SRR4302545.5529352/1‑94 (MQ=60)
                                                              AACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTG                                 <  SRR4302545.4452762/94‑1 (MQ=60)
                                                              AACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTAAATGGGGGATACCAGTATGTG                                 <  SRR4302545.2361436/94‑1 (MQ=60)
                                                               ACGGCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGC                                <  SRR4302545.7597562/94‑1 (MQ=60)
                                                                  GCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACA                             >  SRR4302545.6835666/1‑94 (MQ=60)
                                                                  GCAAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATGCCACGCTGAATGGGGGATACCAGTATGTGCACA                             <  SRR4302545.3113672/94‑1 (MQ=60)
                                                                   CAAATACCACTCTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCTCGCACTGGATACCACGCTGGATGGGGGATACCTGTATGTGCACAA                            >  SRR4302545.1200658/1‑94 (MQ=60)
                                                                    AAATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAAC                           <  SRR4302545.7745571/94‑1 (MQ=60)
                                                                     AATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACG                          >  SRR4302545.873141/1‑94 (MQ=60)
                                                                     AATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACG                          >  SRR4302545.7882509/1‑94 (MQ=60)
                                                                     AATACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACG                          <  SRR4302545.8882079/94‑1 (MQ=60)
                                                                      ATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGG                         >  SRR4302545.5252881/1‑94 (MQ=60)
                                                                      ATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGG                         >  SRR4302545.10307427/1‑94 (MQ=60)
                                                                        ACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCG                       >  SRR4302545.2476444/1‑94 (MQ=60)
                                                                        ACCACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCG                       <  SRR4302545.7885783/94‑1 (MQ=60)
                                                                          CACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGGATGGGGGATACCAGTATGTGCACAACGGCGGG                     >  SRR4302545.5664917/1‑94 (MQ=60)
                                                                          CACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGT                     >  SRR4302545.9559915/1‑94 (MQ=60)
                                                                          CACTGTGGGTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGT                     <  SRR4302545.3026175/94‑1 (MQ=60)
                                                                           ACTGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTA                    <  SRR4302545.10365694/94‑1 (MQ=60)
                                                                             TGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACA                  <  SRR4302545.2602761/94‑1 (MQ=60)
                                                                             TGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACA                  <  SRR4302545.1827924/94‑1 (MQ=60)
                                                                             TGTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACA                  <  SRR4302545.6100987/94‑1 (MQ=60)
                                                                              GTGGTTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAG                 <  SRR4302545.6373676/94‑1 (MQ=60)
                                                                                  TTTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTC             >  SRR4302545.3280239/1‑94 (MQ=60)
                                                                                   TTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCT            <  SRR4302545.6036917/94‑1 (MQ=60)
                                                                                   TTATGCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCT            >  SRR4302545.2182644/1‑94 (MQ=60)
                                                                                     ATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGA          >  SRR4302545.1772966/1‑94 (MQ=60)
                                                                                      TGCCGGCAGAGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCAAAACGGCGGGACAGCGcctacc         >  SRR4302545.9170248/1‑88 (MQ=60)
                                                                                       GCCGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACA        <  SRR4302545.4961297/94‑1 (MQ=60)
                                                                                         CGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACT      <  SRR4302545.1283482/94‑1 (MQ=60)
                                                                                         CGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACT      >  SRR4302545.9202570/1‑94 (MQ=60)
                                                                                         CGGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACT      >  SRR4302545.6997406/1‑94 (MQ=60)
                                                                                          GGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTG     >  SRR4302545.9298156/1‑94 (MQ=60)
                                                                                          GGCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTG     >  SRR4302545.9298157/1‑94 (MQ=60)
                                                                                           GCAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGT    >  SRR4302545.2681502/1‑94 (MQ=60)
                                                                                            CGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTT   <  SRR4302545.4406015/94‑1 (MQ=60)
                                                                                            CGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTT   <  SRR4302545.4406016/94‑1 (MQ=60)
                                                                                            CGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTT   >  SRR4302545.9957730/1‑94 (MQ=60)
                                                                                            CAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTT   >  SRR4302545.9745395/1‑94 (MQ=60)
                                                                                            CAGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTT   >  SRR4302545.9745396/1‑94 (MQ=60)
                                                                                             GGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTG  >  SRR4302545.10403397/1‑94 (MQ=60)
                                                                                             AGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTG  >  SRR4302545.8915956/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGCGGGGATGCCGTACGCACAACCATCAATAAAAACGGTCGCCAGATTGTGAGAGCTGAAGGAACGGCAAATACCACTGTGGTTTATGCCGGCGGCGACCAGACTGTACATGGTCACGCACTGGATACCACGCTGAATGGGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTG  >  NC_000913/2070182‑2070368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑