Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	647	270.1	21258240	98.4%	20918108	94.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG  >  NC_000913/2460816‑2461002

AGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC                                                                                                <  SRR4302545.8571065/94‑1 (MQ=60)

  ACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCCct                                                                                              <  SRR4302545.1033125/94‑3 (MQ=60)

  ACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TG                                                                                             <  SRR4302545.3524494/94‑1 (MQ=60)

   CAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCCctg                                                                                             <  SRR4302545.9725080/94‑4 (MQ=60)

   CAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCCctg                                                                                             <  SRR4302545.9725079/94‑4 (MQ=60)

   CAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGG                                                                                            <  SRR4302545.779566/94‑1 (MQ=60)

      ACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCT                                                                                          >  SRR4302545.1389791/1‑94 (MQ=60)

      ACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCCctggcc                                                                                          >  SRR4302545.881490/1‑88 (MQ=60)

       CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTA                                                                                         <  SRR4302545.2538907/94‑1 (MQ=60)

         TGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTG                                                                                      <  SRR4302545.2115368/94‑1 (MQ=60)

         CGAAGTGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TG‑‑C‑TC‑CCCCCCCCC‑TGGCTATT                                                                                       <  SRR4302545.1595450/94‑1 (MQ=60)

         CGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATT                                                                                       <  SRR4302545.1302120/94‑1 (MQ=60)

          TAAGGGAAAGTCATATTTTCAGGCCTTCTTCTCGTCCCTCTCAAAAAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑C‑‑CCCCCCCCC‑TGGCTATTGT                                                                                     <  SRR4302545.4436095/94‑1 (MQ=60)

          GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TACCC‑C‑‑CCCCCCCCC‑TGGCTATT                                                                                       <  SRR4302545.4110506/94‑1 (MQ=60)

             GGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGC                                                                                   >  SRR4302545.3274105/1‑94 (MQ=60)

             GGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGC                                                                                   <  SRR4302545.9790576/94‑1 (MQ=60)

             GGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGC                                                                                   <  SRR4302545.134769/94‑1 (MQ=60)

             GGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGC                                                                                   <  SRR4302545.3743915/94‑1 (MQ=60)

             GGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGC                                                                                   <  SRR4302545.5360696/94‑1 (MQ=60)

             GGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGC                                                                                   >  SRR4302545.7126135/1‑94 (MQ=60)

              GGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCG                                                                                  <  SRR4302545.5291986/94‑1 (MQ=60)

                AAAGGCATATTTTCAGGCGCTCTGCTCGTCCTTCTCTAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCCTTGGCTATTGTGCGCT                                                                                >  SRR4302545.5783346/1‑94 (MQ=60)

                 AAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTTTTGTGCCCTC                                                                               >  SRR4302545.8528963/1‑94 (MQ=60)

                 AAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTC                                                                               <  SRR4302545.1439607/94‑1 (MQ=60)

                 AAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTC                                                                               >  SRR4302545.549596/1‑94 (MQ=60)

                 AAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTC                                                                               <  SRR4302545.3205059/94‑1 (MQ=60)

                  AGGCATTTTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCA‑GA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCAT                                                                             <  SRR4302545.2105295/94‑1 (MQ=60)

                   GGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCAT                                                                             <  SRR4302545.72829/94‑1 (MQ=60)

                   GGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCAT                                                                             >  SRR4302545.6464100/1‑94 (MQ=60)

                   GGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCAT                                                                             <  SRR4302545.734825/94‑1 (MQ=60)

                   GGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATA                                                                            <  SRR4302545.8674105/94‑1 (MQ=60)

                     CATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTTTTTTGCGCTCATAC                                                                           >  SRR4302545.6204241/1‑94 (MQ=60)

                     CATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTTTGCGCTCATAC                                                                           >  SRR4302545.6204240/1‑94 (MQ=60)

                     CATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACA                                                                          <  SRR4302545.156105/94‑1 (MQ=60)

                      ATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TC‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACA                                                                          <  SRR4302545.4301941/94‑1 (MQ=60)

                      ATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACA                                                                          <  SRR4302545.1098544/94‑1 (MQ=60)

                       TATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCCctggcttttgtgggcccataccc                                                                         >  SRR4302545.578416/1‑71 (MQ=60)

                       TATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACT                                                                        >  SRR4302545.5210916/1‑94 (MQ=60)

                        ATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTCCTTTTCTGCATTTCCAGGA‑TC‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACT                                                                        <  SRR4302545.4452299/94‑1 (MQ=60)

                         TTTTCGGGCGTTCTGCTCCTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATTC‑‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTC                                                                       <  SRR4302545.901447/94‑1 (MQ=60)

                         TTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTCTTGTGCGCTCCTACACCC                                                                       >  SRR4302545.7708181/1‑94 (MQ=60)

                         TTTTCAGGCGTTCTGCTCCTCCTTCTCAAAGAGTTTTCTTTTCTGCATTTCCAGGA‑TC‑‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCA                                                                      <  SRR4302545.3565071/94‑1 (MQ=60)

                           TTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑GCCCCCCCCcctgggtttttggggctcccaccccca                                                                     >  SRR4302545.9520513/1‑67 (MQ=60)

                            tctgtttgcggttttctggatggccctcaaaaattattttattttttgtattttcaggccaccCCCCCCCCC‑TGGCTATTGTGCGCTCATACAC                                                                         <  SRR4302545.5234873/31‑1 (MQ=60)

                            TCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAA                                                                    <  SRR4302545.2908870/94‑1 (MQ=60)

                            TCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAA                                                                    <  SRR4302545.711904/94‑1 (MQ=60)

                            TCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAAT                                                                   >  SRR4302545.3683564/1‑94 (MQ=60)

                             CAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAAT                                                                   <  SRR4302545.10164723/94‑1 (MQ=60)

                              AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TG‑‑C‑A‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTA                                                                 <  SRR4302545.8853812/94‑1 (MQ=60)

                              AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TAC‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATT                                                                  <  SRR4302545.5807806/94‑1 (MQ=60)

                              AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTGTTGTGGGTTCTTACACTCAAATT                                                                  >  SRR4302545.9074947/1‑94 (MQ=60)

                              AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATT                                                                  <  SRR4302545.3328039/94‑1 (MQ=60)

                                GCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TCCCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTA                                                                 <  SRR4302545.1637993/94‑1 (MQ=60)

                                GCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAA                                                                <  SRR4302545.1311478/94‑1 (MQ=60)

                                  GTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTTTGCGCTCATACCCTCAAATTAAAA                                                              >  SRR4302545.430539/1‑94 (MQ=60)

                                  GTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAA                                                              >  SRR4302545.10182573/1‑94 (MQ=60)

                                    tcgtCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TT‑‑CGC‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGAT                                                            <  SRR4302545.9253390/90‑1 (MQ=60)

                                    TCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGAT                                                            >  SRR4302545.5483671/1‑94 (MQ=60)

                                    TCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATA                                                           <  SRR4302545.5587926/94‑1 (MQ=60)

                                       TCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TAC‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGG                                                         <  SRR4302545.8882426/94‑1 (MQ=60)

                                        CTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTCTTTTGCGCTCATACACTCCAATTAAAAATAAGTT                                                       >  SRR4302545.7924040/1‑94 (MQ=60)

                                          CCTCCTTCTCAAAGGGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTC                                                      <  SRR4302545.9841753/94‑1 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTTTGCGCTCATACACcccaattaaaaaaaaggttt                                                     >  SRR4302545.9717746/1‑74 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCTCTCATACACTCAAATTAAAGATAGGTTCT                                                     >  SRR4302545.9125375/1‑94 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCT                                                     <  SRR4302545.6982550/94‑1 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCT                                                     <  SRR4302545.4778199/94‑1 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCT                                                     <  SRR4302545.4914295/94‑1 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCT                                                     >  SRR4302545.9125736/1‑94 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCA                                                     >  SRR4302545.3437900/1‑94 (MQ=60)

                                           GTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTA                                                    >  SRR4302545.5686435/1‑94 (MQ=60)

                                             CCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAA                                                  <  SRR4302545.2628932/94‑1 (MQ=60)

                                             CCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAA                                                  >  SRR4302545.10720225/1‑94 (MQ=60)

                                             CCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAA                                                  >  SRR4302545.4256666/1‑94 (MQ=60)

                                              CTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTTTGCGCTCCTACACTCAAATTAAAGATAGGTTCTAAA                                                  >  SRR4302545.10323055/1‑94 (MQ=60)

                                               TTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCCctgcctattgtggcctcctaacccaaaattaaagataggttctaaaa                                                 >  SRR4302545.6131213/1‑47 (MQ=60)

                                               TTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATA                                                <  SRR4302545.4111052/94‑1 (MQ=60)

                                                TCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATA                                                <  SRR4302545.1398425/94‑1 (MQ=60)

                                                 TTCAAAGAGTTTCCTTTTCTGCATTTCCAGGA‑TAC‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAA                                               <  SRR4302545.5006749/94‑1 (MQ=60)

                                                 CTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAA                                               >  SRR4302545.1888210/1‑94 (MQ=60)

                                                 CTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAA                                               >  SRR4302545.10779673/1‑94 (MQ=60)

                                                   CTAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TCCCCCCCCCCC‑TGGCGATTGTGGGCTCATCCACCCAAATTAAAGATAGGTTCTAAATAAA                                              >  SRR4302545.6645178/1‑94 (MQ=60)

                                                   CAAAGAGTTTGCTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAAT                                             <  SRR4302545.10114001/94‑1 (MQ=60)

                                                   CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TC‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAAT                                             <  SRR4302545.7127943/94‑1 (MQ=60)

                                                   CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TC‑‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATG                                            <  SRR4302545.1179617/94‑1 (MQ=60)

                                                   CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTTTTGTGCGCTCTTCAACTCAAATTAAAGTTAGGTTCTAAATAAAT                                             >  SRR4302545.9464520/1‑94 (MQ=60)

                                                   CAAAGAGTTTACTTTTCTGCATTCCCAGGA‑TC‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAAT                                             <  SRR4302545.1223503/94‑1 (MQ=60)

                                                    AAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATG                                            <  SRR4302545.8754111/94‑1 (MQ=60)

                                                    AAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGA                                           >  SRR4302545.5607251/1‑94 (MQ=60)

                                                     AAGAGTTTTCTTTTCTTCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGA                                           <  SRR4302545.2923699/94‑1 (MQ=60)

                                                     AAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACCAAAATTAAAGATAGGTTCTAAAAAAATAA                                           >  SRR4302545.6556169/1‑94 (MQ=60)

                                                     AAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAG                                          <  SRR4302545.10697882/94‑1 (MQ=60)

                                                       GAATTTTCTTTTCTGCTTTTCCAGGA‑TG‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGC                                         <  SRR4302545.9336375/94‑1 (MQ=60)

                                                          aagtgttttcctttccgcctttgcaagcatacaCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTGCTAAATAAATGA                                           <  SRR4302545.5726481/61‑1 (MQ=60)

                                                           TTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTT                                     <  SRR4302545.4659135/94‑1 (MQ=60)

                                                            gatttttcttttcggcttttccacgatacccCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGC                                         <  SRR4302545.5969188/63‑1 (MQ=60)

                                                            agttttcttttcttcatttccagcgttccccCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGC                                         <  SRR4302545.5969189/63‑1 (MQ=60)

                                                            TACTTTTCTGCATTTCCAGGATTC‑‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTT                                    <  SRR4302545.3364040/94‑1 (MQ=60)

                                                            TACTTTTCTGCATTTCCAGGA‑TC‑‑G‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTT                                    <  SRR4302545.5989099/94‑1 (MQ=60)

                                                            TACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTT                                   <  SRR4302545.1025137/94‑1 (MQ=60)

                                                              CTTTTCTGCATTTCCAGGA‑TAC‑C‑C‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTT                                  <  SRR4302545.1473684/94‑1 (MQ=60)

                                                               TTTTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTG                                 <  SRR4302545.8036452/94‑1 (MQ=60)

                                                                 TTCTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGAT                               <  SRR4302545.10657247/94‑1 (MQ=60)

                                                                 TTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATA                              <  SRR4302545.9928080/94‑1 (MQ=60)

                                                                   CTGCATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTCTTGTGGCCTCATACACTCAAATTAAAAATAGGTTTTAAAAAAATGAGCGTTTTTTtatat                             >  SRR4302545.741475/1‑89 (MQ=60)

                                                                   CTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGT                            >  SRR4302545.10225028/1‑94 (MQ=60)

                                                                    TGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTC                           <  SRR4302545.3012352/94‑1 (MQ=60)

                                                                     tttctgcagtaccagtgtactcCCCCCCCCC‑TGGCTATTGTGCGCTCATACATTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGA                                <  SRR4302545.8096950/72‑1 (MQ=60)

                                                                       ATTTCCAGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTA                         >  SRR4302545.1235067/1‑94 (MQ=60)

                                                                       ATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAT                        >  SRR4302545.3741048/1‑94 (MQ=60)

                                                                        ttgccatttcaggattcccCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAG                             <  SRR4302545.10286547/75‑1 (MQ=60)

                                                                             AGGA‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAT                   <  SRR4302545.5676356/94‑1 (MQ=60)

                                                                               GA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAG                <  SRR4302545.3112863/94‑1 (MQ=60)

                                                                                A‑TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAG                <  SRR4302545.4114859/94‑1 (MQ=60)

                                                                                  ttgatgcccCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGTTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAT                   <  SRR4302545.5676355/85‑1 (MQ=60)

                                                                                  TA‑‑C‑TC‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGG               <  SRR4302545.2593629/94‑1 (MQ=60)

                                                                                     attctcCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAG                <  SRR4302545.6575262/88‑1 (MQ=60)

                                                                                     acccccCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAG                <  SRR4302545.599455/88‑1 (MQ=60)

                                                                                      tccccCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGACAGTCTATTTCATTAGG               <  SRR4302545.7249316/89‑1 (MQ=60)

                                                                                       tcccCCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGT              <  SRR4302545.2158783/90‑1 (MQ=60)

                                                                                           CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATA          <  SRR4302545.5528366/94‑1 (MQ=60)

                                                                                           CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATA          <  SRR4302545.5528365/94‑1 (MQ=60)

                                                                                            CCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT         <  SRR4302545.7351786/94‑1 (MQ=60)

                                                                                            CCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT         <  SRR4302545.6479656/94‑1 (MQ=60)

                                                                                            CCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT         <  SRR4302545.2510167/94‑1 (MQ=60)

                                                                                             CCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATA        <  SRR4302545.3048672/94‑1 (MQ=60)

                                                                                              CCCCCC‑TGGATATTGTGCGCTCATCCACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATAT       <  SRR4302545.9327835/94‑1 (MQ=60)

                                                                                               CCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATA      >  SRR4302545.3307022/1‑94 (MQ=60)

                                                                                               CCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATA      <  SRR4302545.2633675/94‑1 (MQ=60)

                                                                                               CCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATA      <  SRR4302545.8623998/94‑1 (MQ=60)

                                                                                               CACCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATA      >  SRR4302545.8120884/1‑94 (MQ=60)

                                                                                                CCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATAT     <  SRR4302545.5263226/94‑1 (MQ=60)

                                                                                                CCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATAT     <  SRR4302545.5263228/94‑1 (MQ=60)

                                                                                                 CCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATT    >  SRR4302545.4380381/1‑94 (MQ=60)

                                                                                                  CC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTT   >  SRR4302545.5730192/1‑94 (MQ=60)

                                                                                                  CC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTT   >  SRR4302545.518520/1‑94 (MQ=60)

                                                                                                  CC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTT   >  SRR4302545.5502412/1‑94 (MQ=60)

                                                                                                   C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG  <  SRR4302545.9716610/94‑1 (MQ=60)

AGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGA‑TA‑‑C‑T‑‑CCCCCCCCC‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG  >  NC_000913/2460816‑2461002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`