Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
245 |
579.6 |
28867798 |
97.7% |
28203838 |
96.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
66,528 |
T→C |
Q8R (CAG→CGG) |
araD ← |
L‑ribulose‑5‑phosphate 4‑epimerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 66,528 | 0 | T | C | 99.5%
| 1648.2
/ NA
| 428 | Q8R (CAG→CGG) | araD | L‑ribulose‑5‑phosphate 4‑epimerase |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (195/231); total (195/233) |
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 459 total aligned reads displayed.
AAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATA > NC_000913/66435‑66618
|
aGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGc > 1:11229062/1‑96 (MQ=255)
aCGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGc < 2:912518‑M1/96‑2 (MQ=255)
aCGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGc > 2:5826709‑M1/1‑95 (MQ=255)
aCGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGc < 2:1928079‑M1/96‑2 (MQ=255)
cgccgcGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcc < 1:8342187‑M1/96‑3 (MQ=255)
gccgcGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGccc < 1:10789038‑M1/96‑4 (MQ=255)
gcgcTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgag > 1:1582558‑M1/1‑90 (MQ=255)
cgcTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgaga < 1:4586466‑M1/96‑8 (MQ=255)
gcTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagac > 2:9708203‑M1/1‑88 (MQ=255)
gcTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagac < 2:2586223‑M1/96‑9 (MQ=255)
cTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacc < 1:2211517‑M1/96‑10 (MQ=255)
cTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGATGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGgccgagacc > 1:4847264‑M1/1‑87 (MQ=255)
tggcgatCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagaccc > 1:11658254‑M1/3‑86 (MQ=255)
tCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagaccc > 1:1044828‑M1/1‑86 (MQ=255)
gcgATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCCGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgc > 1:1421733‑M1/1‑84 (MQ=255)
gcgATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgc < 2:7225324‑M1/96‑13 (MQ=255)
gcgATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgc < 2:6122164‑M1/96‑13 (MQ=255)
cgATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgca > 2:11785343‑M1/1‑83 (MQ=255)
gATCAACGGCGCTGACGTTGCCCCATGTGCGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcac < 1:368414‑M1/96‑15 (MQ=255)
gATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcac < 2:1419581‑M1/96‑15 (MQ=255)
gATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcac < 1:750239‑M1/96‑15 (MQ=255)
gATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcac > 1:12968791‑M1/1‑82 (MQ=255)
aTCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTGTGGCAGCGCCAGGGTGGCTTCTAATACCCGGCGcccgagacccgcacg > 2:3047772‑M1/1‑81 (MQ=255)
tCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgc > 1:1704555‑M1/1‑80 (MQ=255)
cAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcg > 1:8738012‑M1/1‑79 (MQ=255)
cAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcg < 1:6909781‑M1/96‑18 (MQ=255)
aCGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtc < 1:5335223‑M1/96‑20 (MQ=255)
ggCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcga < 2:1235636‑M1/96‑22 (MQ=255)
cgcTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacc > 1:4449973‑M1/1‑73 (MQ=255)
gcTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacct > 1:1905346‑M1/1‑72 (MQ=255)
gcTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacct > 2:7914081‑M1/1‑72 (MQ=255)
gcTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacct < 2:6929651‑M1/96‑25 (MQ=255)
gcTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacct < 1:4965783‑M1/96‑25 (MQ=255)
gcTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacct < 1:3098535‑M1/96‑25 (MQ=255)
cTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctg < 2:12024448‑M1/96‑26 (MQ=255)
tGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgc < 2:3866233‑M1/96‑27 (MQ=255)
cGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcagg > 1:12081211‑M1/1‑67 (MQ=255)
ttGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggta < 2:4162523‑M1/96‑32 (MQ=255)
tGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtat < 2:3185312‑M1/96‑33 (MQ=255)
tGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtat < 1:9833635‑M1/96‑33 (MQ=255)
gCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatg < 1:12749643‑M1/96‑34 (MQ=255)
ccccATGTGAGCGTGACCAGGTTAGGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatgg < 1:12573706‑M1/96‑35 (MQ=255)
gccaTGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggaatgga > 1:13900909‑M1/2‑61 (MQ=255)
cccATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatgga > 1:25051‑M1/1‑61 (MQ=255)
cccATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatgga > 2:12996935‑M1/1‑61 (MQ=255)
ccATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGTCTTCTAATACCCGGCGcccgagccccgcacgcgtcgacctgcaggtatggag < 2:3743428‑M1/96‑37 (MQ=255)
gtgAGCGTGACCAGGGTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagtaac > 2:8891605‑M1/1‑56 (MQ=255)
gCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagta < 1:6142445‑M1/96‑45 (MQ=255)
gCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagta < 1:12350153‑M1/96‑45 (MQ=255)
cGTGCCCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtag < 1:11923568‑M1/96‑46 (MQ=255)
cGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgccctgcaggtatggagaaacagtag < 1:90302‑M1/96‑46 (MQ=255)
tGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagag < 2:7528645‑M1/96‑48 (MQ=255)
tGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagag > 2:3597671‑M1/1‑49 (MQ=255)
tGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagag < 2:8678888‑M1/96‑48 (MQ=255)
tGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagag > 2:10481232‑M1/1‑49 (MQ=255)
aCCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTTTAATACCCGGCGcccgagacccgcacgcgtcgacctgcagggatggagaaacagaagagag > 1:585673‑M1/1‑47 (MQ=255)
ccAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagaccctcacgcgtcgacctgcaggtatggagaaacagtagagact < 1:10152571‑M1/96‑51 (MQ=255)
cAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagtt < 1:14097030‑M1/96‑52 (MQ=255)
cAGGTTGTGTCTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagaggt > 2:13729577‑M1/1‑45 (MQ=255)
aGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttg > 1:2929361‑M1/1‑44 (MQ=255)
aGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttg > 2:10921780‑M1/1‑44 (MQ=255)
aGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagag < 1:5825557‑M1/91‑48 (MQ=255)
ggTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgc < 2:5241494‑M1/96‑54 (MQ=255)
ggTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcggcgacctgcaggtatggagaaacagtagagagctgc > 2:2146444‑M1/1‑43 (MQ=255)
gTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcg > 2:4728182‑M1/1‑42 (MQ=255)
gTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcg < 2:10047972‑M1/96‑55 (MQ=255)
ttGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcga < 1:14341692‑M1/96‑56 (MQ=255)
gtgtTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgata < 2:4594773‑M1/96‑58 (MQ=255)
tgtTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataa < 1:11007426‑M1/96‑59 (MQ=255)
gtTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaa < 1:13620224‑M1/96‑60 (MQ=255)
ttttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaa > 2:3968062‑M1/1‑36 (MQ=255)
tttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaag < 2:14365154‑M1/96‑62 (MQ=255)
tttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaa < 1:8438549‑M1/96‑62 (MQ=255)
tttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaa < 1:8631439‑M1/96‑62 (MQ=255)
tttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcggcgacctgcaggtatggagaaacagtagagagttgcgataaaaa > 2:9271783‑M1/1‑35 (MQ=255)
ttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcccgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaag < 1:6409087‑M1/96‑63 (MQ=255)
ttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcgggtatggagaaacagtagagagttgcgataaaaag > 2:11548159‑M1/1‑34 (MQ=255)
aGCGCCCGGTTGGCTTCTAATCCCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtca < 2:12706545‑M1/96‑68 (MQ=255)
aGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtca > 2:5996642‑M1/1‑29 (MQ=255)
aGCGCCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtca < 2:1344159‑M1/96‑68 (MQ=255)
gagccaGGTTGGCTTTTAATACCCGGCGcgcgagacccgcaagcgtcgacctgcaggtatggagaaacagtagatagttgcgataaaaagcgtcat < 1:4217197‑M1/94‑69 (MQ=255)
ccccagGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcagg < 1:2990290‑M1/94‑70 (MQ=255)
gcCAGGTTGGCTTCTAATGCCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggt < 2:10782572‑M1/96‑71 (MQ=255)
gcCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgggtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggt > 2:572474‑M1/1‑26 (MQ=255)
gcCAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggt > 1:7604247‑M1/1‑26 (MQ=255)
cAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtag > 1:5576136‑M1/1‑24 (MQ=255)
cAGGTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtag > 2:2752628‑M1/1‑24 (MQ=255)
ggTTGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtagga > 2:10224698‑M1/1‑22 (MQ=255)
tGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggctcc < 2:12574613‑M1/96‑78 (MQ=255)
tGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatcc > 1:347466‑M1/1‑19 (MQ=255)
tGGCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatcc < 2:8345920‑M1/96‑78 (MQ=255)
gCTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgc > 2:14064089‑M1/1‑17 (MQ=255)
cTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgct < 2:13103842‑M1/96‑81 (MQ=255)
cTTCTAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgct < 2:434238‑M1/96‑81 (MQ=255)
tAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatc > 1:5910425‑M1/1‑12 (MQ=255)
tAATACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatc > 1:7878903‑M1/1‑12 (MQ=255)
aaTACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatct < 1:9500851‑M1/96‑86 (MQ=255)
aaTACCCGGCGcccgagacccgcacgcgtcgacctgcaggaatggagaaacagtagagaggtgcgataaaaagcgtcagggaggatccgctaatct > 2:6596373‑M1/1‑11 (MQ=255)
aTACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatctt > 2:13520897‑M1/1‑10 (MQ=255)
aTACCCGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaagcgtcaggtaggatccgctaatctt < 1:270683‑M1/96‑87 (MQ=255)
|
AAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATA > NC_000913/66435‑66618
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTAC > NC_000913/66428‑66593
|
NNNCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCC < SRR4302518.8319892/101‑1 (MQ=60)
GATCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGTTTGGCTTCTAATACCC > SRR4302518.3400534/1‑101 (MQ=60)
NNNACAGAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGTCAGGTTGGCTTCTAATACCCG < SRR4302518.10893898/101‑1 (MQ=60)
NNNACAAAGACGCCGCTCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCG < SRR4302518.10700915/101‑1 (MQ=60)
ATCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACNNN > SRR4302518.12255120/1‑101 (MQ=60)
ATCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACNNN > SRR4302518.12802261/1‑101 (MQ=60)
ATCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCG < SRR4302518.6692776/101‑1 (MQ=60)
ATCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCG < SRR4302518.415322/101‑1 (MQ=60)
nnncccgcacgccggcctgcagataagcgtcgatggcgttcacccaggtgcGCGTGACCAGGTTGTGTTGTGCCAGCGCCAGGTTGGCTTCTAATACCCGG < SRR4302518.12532259/50‑1 (MQ=51)
TCTCAAAGACGCCCCGCTCGCGCTCAACGGCGTTGACGTTGCCCGATGTGAGCGTTACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATCCCCGG < SRR4302518.6268497/101‑1 (MQ=60)
TCACAAAGACGCCGCGCTCGCGCTCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCNNN > SRR4302518.15013154/1‑101 (MQ=60)
TCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGG < SRR4302518.2791230/101‑1 (MQ=60)
TCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGG > SRR4302518.2830877/1‑101 (MQ=60)
CCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGGGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGATGGCTTCTAATACCCGG > SRR4302518.2173793/1‑101 (MQ=60)
NNNAAAGGCGCCGCGCTCGCGATCACCGCCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGC < SRR4302518.10639795/101‑1 (MQ=60)
CACACAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGC < SRR4302518.5142278/101‑1 (MQ=60)
CACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGC < SRR4302518.6602868/101‑1 (MQ=60)
NNNAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGC < SRR4302518.7365547/101‑1 (MQ=60)
CAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGC > SRR4302518.3329828/1‑101 (MQ=60)
CAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGC > SRR4302518.1070586/1‑101 (MQ=60)
AAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGGTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGNNN > SRR4302518.9036786/1‑101 (MQ=60)
NNNGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaa < SRR4302518.13116358/101‑62 (MQ=60)
NNNGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGcccgagacccgcacgcgtcgacctgcaggtatggagaaacagtagagagttgcgataaaaa < SRR4302518.10753689/101‑62 (MQ=60)
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GATCACAAAGACGCCGCGCTCGCGATCAACGGCGCTGACGTTGCCCCATGTGAGCGTGACCAGGTTGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTAC > NC_000913/66428‑66593
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
