Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	9,790	T→C	V162A (GTA→GCA)	mog →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	9,790	0	T	C	97.5%	669.7 / 2.8	204	V162A (GTA→GCA)	mog	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (4/1); new base C (93/106); total (97/107)
Fisher's exact test for biased strand distribution p-value = 1.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.15e-01

Only 100 of 221 total aligned reads displayed.

TACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCG  >  NC_000913/9700‑9879

tACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGcgtac                                                                                         >  1:4281986/1‑93 (MQ=255)

 aCCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGcgcacc                                                                                        <  1:4062864/93‑1 (MQ=255)

   ccGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGcgcaccgt                                                                                      <  2:4147162/93‑1 (MQ=255)

    cGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGcgcaccgta                                                                                     <  2:734103/93‑1 (MQ=255)

    cGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGcgcaccgta                                                                                     >  1:3397927/1‑93 (MQ=255)

      gTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGCATTTTTGCCAGCGCACGGTACt                                                                                   >  1:537813/1‑93 (MQ=255)

        cAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGc                                                                                 <  2:395782/93‑1 (MQ=255)

         aGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCa                                                                                <  1:1186449/93‑1 (MQ=255)

           ccGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCAtt                                                                              >  1:602458/1‑93 (MQ=255)

            cGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTc                                                                             <  1:6126580/93‑1 (MQ=255)

             gAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCa                                                                            >  1:987871/1‑93 (MQ=255)

             gAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCa                                                                            >  1:3168432/1‑93 (MQ=255)

              aaGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAg                                                                           <  2:5854621/93‑1 (MQ=255)

              aaGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAg                                                                           <  2:5560804/93‑1 (MQ=255)

              aaGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAg                                                                           >  2:4809723/1‑93 (MQ=255)

              aaGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAg                                                                           >  2:4415250/1‑93 (MQ=255)

               aGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGt                                                                          <  1:4880544/93‑1 (MQ=255)

                gTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGtt                                                                         <  2:1848103/93‑1 (MQ=255)

                 tCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTg                                                                        >  1:793770/1‑93 (MQ=255)

                 tCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTg                                                                        >  1:3075397/1‑93 (MQ=255)

                   tATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCt                                                                      >  1:163086/1‑93 (MQ=255)

                    aTTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCGCCGTACTGCATTCAGTTGCTg                                                                     <  1:430850/93‑1 (MQ=255)

                       aaaGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGaa                                                                  <  2:3369181/93‑1 (MQ=255)

                        aaGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAg                                                                 <  1:2124948/93‑1 (MQ=255)

                         agagACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAgg                                                                >  2:5478821/1‑93 (MQ=255)

                          gagaCGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAggg                                                               >  1:4407490/1‑93 (MQ=255)

                          gagaCGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAggg                                                               <  1:5354118/93‑1 (MQ=255)

                          gagaCGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGGACACGGGATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAgag                                                               >  1:4538722/1‑91 (MQ=255)

                           agaCGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGc                                                              <  2:4462169/93‑1 (MQ=255)

                            gaCGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGcc                                                             <  2:3113527/93‑1 (MQ=255)

                             aCGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCa                                                            <  2:6362020/93‑1 (MQ=255)

                             aCGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCa                                                            >  2:3767469/1‑93 (MQ=255)

                              cGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCAt                                                           <  2:6039381/93‑1 (MQ=255)

                                  ggAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGt                                                       >  2:4647155/1‑93 (MQ=255)

                                   gAAGGGGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGtt                                                      >  1:757415/1‑93 (MQ=255)

                                     aGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGa                                                    >  1:5211927/1‑93 (MQ=255)

                                      ggTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGaa                                                   >  2:1816585/1‑93 (MQ=255)

                                        tgtgAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAAc                                                 >  2:1138308/1‑93 (MQ=255)

                                        tgtgAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAAc                                                 <  1:1437193/93‑1 (MQ=255)

                                           gAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGc                                              >  1:1951552/1‑93 (MQ=255)

                                            aaGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCa                                             >  1:4575350/1‑93 (MQ=255)

                                            aaGGACGCTGAGGGTAACGTTGTGGTACACGGGATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCa                                             >  1:5917558/1‑93 (MQ=255)

                                              ggACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCAcc                                           <  1:1842429/93‑1 (MQ=255)

                                               gACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCg                                          <  2:1922125/93‑1 (MQ=255)

                                                aCGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCgg                                         <  2:1503640/93‑1 (MQ=255)

                                                  gCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGaa                                       <  1:6247708/93‑1 (MQ=255)

                                                   cTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAg                                      <  2:1654593/93‑1 (MQ=255)

                                                    tGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGt                                     <  2:4550214/93‑1 (MQ=255)

                                                     gAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTg                                    <  2:128925/93‑1 (MQ=255)

                                                       gggTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGt                                  <  1:4494803/93‑1 (MQ=255)

                                                       gggTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGt                                  <  1:3332058/93‑1 (MQ=255)

                                                       gggTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGt                                  >  1:2609590/1‑93 (MQ=255)

                                                         gTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCAATACGTTGAAACGGCACCGGAAGTGGTTg                                <  1:192724/93‑1 (MQ=255)

                                                           aaCGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgca                              <  1:5125457/93‑1 (MQ=255)

                                                            aCGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgcag                             >  2:2935662/1‑93 (MQ=255)

                                                            aCGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgcag                             <  1:1662674/93‑1 (MQ=255)

                                                             cGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgcagc                            >  1:3778593/1‑93 (MQ=255)

                                                             cGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgcagc                            <  2:5928098/93‑1 (MQ=255)

                                                              gTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgcagca                           <  1:2293317/93‑1 (MQ=255)

                                                              gTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgcagca                           <  1:4221207/93‑1 (MQ=255)

                                                              gTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTgcagca                           >  1:6472916/1‑93 (MQ=255)

                                                               ttGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAt                          >  2:1483005/1‑93 (MQ=255)

                                                               ttGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAt                          <  2:5302883/93‑1 (MQ=255)

                                                               ttGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAt                          >  1:433967/1‑93 (MQ=255)

                                                                  tgGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCa                       <  1:3098408/93‑1 (MQ=255)

                                                                   ggTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAg                      >  1:2424682/1‑93 (MQ=255)

                                                                   ggTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAg                      >  1:3552395/1‑93 (MQ=255)

                                                                     tACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGAc                    >  1:1041026/1‑93 (MQ=255)

                                                                      acacGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGAcc                   >  2:5987897/1‑93 (MQ=255)

                                                                      acacGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGAcc                   <  1:3175098/93‑1 (MQ=255)

                                                                       cacGGTATTTTTGCCAGCGCAACGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCg                  >  1:2965472/1‑93 (MQ=255)

                                                                        acGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAACGGGCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGa                 >  1:1359489/1‑93 (MQ=255)

                                                                        acGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGa                 >  2:223910/1‑93 (MQ=255)

                                                                        acGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGa                 <  1:401494/93‑1 (MQ=255)

                                                                         cGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGaa                >  2:5352231/1‑93 (MQ=255)

                                                                         cGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGaa                <  2:375005/93‑1 (MQ=255)

                                                                         cGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGaa                <  1:5759183/93‑1 (MQ=255)

                                                                         cGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGaa                <  2:4137151/93‑1 (MQ=255)

                                                                          ggTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAag               <  1:856079/93‑1 (MQ=255)

                                                                          ggTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAag               <  1:5665130/93‑1 (MQ=255)

                                                                           gTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAaga              >  1:4658339/1‑93 (MQ=255)

                                                                           gTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAaga              <  2:3825834/93‑1 (MQ=255)

                                                                           gTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAaga              >  2:243029/1‑93 (MQ=255)

                                                                           gTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAaga              <  1:3870704/93‑1 (MQ=255)

                                                                            tATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAagag             <  1:218956/93‑1 (MQ=255)

                                                                             aTTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAagagg            >  2:3522132/1‑92 (MQ=255)

                                                                             aTTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAagagg            >  1:5906274/1‑92 (MQ=255)

                                                                             aTTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGt            >  2:705638/1‑93 (MQ=255)

                                                                              tttttGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAAACCGAAGAGTg           <  1:412190/93‑1 (MQ=255)

                                                                              tttttGCCAGCGCACCGTAATGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTg           >  2:6320226/1‑93 (MQ=255)

                                                                               ttttGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGc          <  1:1679394/93‑1 (MQ=255)

                                                                                 ttGCCGGCGCGCCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCaa        <  1:5140177/93‑1 (MQ=255)

                                                                                  tGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAg       <  1:3443246/93‑1 (MQ=255)

                                                                                   gCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGa      >  2:5527911/1‑93 (MQ=255)

                                                                                   gCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGa      <  2:3839726/93‑1 (MQ=255)

                                                                                    ccAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGAc     <  2:5097735/93‑1 (MQ=255)

                                                                                    ccAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGAc     <  2:3223664/93‑1 (MQ=255)

                                                                                     cAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGAcg    <  2:5744984/93‑1 (MQ=255)

                                                                                      aGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGAcgc   >  1:5466598/1‑93 (MQ=255)

                                                                                       gcgcACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGAcgcg  >  1:510095/1‑93 (MQ=255)

TACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCG  >  NC_000913/9700‑9879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACTTACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACG  >  NC_000913/9697‑9882

ACTTACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGC                                                                                              <  SRR4302537.4780641/94‑1 (MQ=60)

ACTTACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGC                                                                                              <  SRR4302537.447143/94‑1 (MQ=60)

ACTTACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGC                                                                                              >  SRR4302537.3351336/1‑94 (MQ=60)

  TTACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGTAC                                                                                            >  SRR4302537.4311753/1‑94 (MQ=60)

    ACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCG                                                                                          <  SRR4302537.4091255/94‑1 (MQ=60)

      CCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTA                                                                                        >  SRR4302537.3421996/1‑94 (MQ=60)

      CCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTA                                                                                        <  SRR4302537.4368601/94‑1 (MQ=60)

      CCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTA                                                                                        <  SRR4302537.5366891/94‑1 (MQ=60)

      CCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTA                                                                                        >  SRR4302537.3040613/1‑94 (MQ=60)

       CGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTAC                                                                                       <  SRR4302537.892109/94‑1 (MQ=60)

        GGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGCATTTTTGCCAGCGCACGGTACT                                                                                      >  SRR4302537.541502/1‑94 (MQ=60)

           CAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCA                                                                                   >  SRR4302537.3785470/1‑94 (MQ=60)

           CAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCA                                                                                   >  SRR4302537.5522797/1‑94 (MQ=60)

           CAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCA                                                                                   <  SRR4302537.446831/94‑1 (MQ=60)

            AGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCAT                                                                                  <  SRR4302537.1194692/94‑1 (MQ=60)

             GCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATT                                                                                 >  SRR4302537.606579/1‑94 (MQ=60)

              CCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTC                                                                                >  SRR4302537.3803712/1‑94 (MQ=60)

               CGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCG                                                                               >  SRR4302537.5162464/1‑94 (MQ=60)

               CGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCA                                                                               <  SRR4302537.3913323/94‑1 (MQ=60)

               CGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCA                                                                               >  SRR4302537.3190688/1‑94 (MQ=60)

               CGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCA                                                                               >  SRR4302537.994693/1‑94 (MQ=60)

               CGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCA                                                                               >  SRR4302537.1556694/1‑94 (MQ=60)

               CGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCA                                                                               <  SRR4302537.6168690/94‑1 (MQ=60)

                GAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAG                                                                              <  SRR4302537.1832131/94‑1 (MQ=60)

                GAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAG                                                                              <  SRR4302537.856319/94‑1 (MQ=60)

                 GAGTCTATTAAAGAAGCGCTCGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGT                                                                             <  SRR4302537.4330929/94‑1 (MQ=60)

                 AAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGT                                                                             <  SRR4302537.1673068/94‑1 (MQ=60)

                 AAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGT                                                                             >  SRR4302537.3568663/1‑94 (MQ=60)

                  AGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTT                                                                            <  SRR4302537.4914260/94‑1 (MQ=60)

                   GTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTG                                                                           <  SRR4302537.1952884/94‑1 (MQ=60)

                   GTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTG                                                                           >  SRR4302537.3196960/1‑94 (MQ=60)

                   GTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTG                                                                           >  SRR4302537.3096822/1‑94 (MQ=60)

                   GTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTG                                                                           >  SRR4302537.799218/1‑94 (MQ=60)

                     CTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCT                                                                         >  SRR4302537.164248/1‑94 (MQ=60)

                     CTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCT                                                                         >  SRR4302537.3323722/1‑94 (MQ=60)

                      TATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCNCCGTACTGCATTCAGTTGCTG                                                                        >  SRR4302537.3276317/1‑94 (MQ=60)

                      TATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTG                                                                        <  SRR4302537.4987541/94‑1 (MQ=60)

                       ATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCGCCGTACTGCATTCAGTTGCTGG                                                                       <  SRR4302537.433851/94‑1 (MQ=60)

                       ATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGG                                                                       >  SRR4302537.6000559/1‑94 (MQ=60)

                       ATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGG                                                                       <  SRR4302537.4232695/94‑1 (MQ=60)

                        TTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGA                                                                      <  SRR4302537.3442172/94‑1 (MQ=60)

                           AAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGG                                                                   >  SRR4302537.6236939/1‑94 (MQ=60)

                           AAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGG                                                                   <  SRR4302537.4543794/94‑1 (MQ=60)

                           AAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGG                                                                   <  SRR4302537.2139897/94‑1 (MQ=60)

                            AGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGG                                                                  >  SRR4302537.4437909/1‑94 (MQ=60)

                            AGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGGACACGGGATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGAG                                                                  >  SRR4302537.4570142/1‑94 (MQ=60)

                             GAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGC                                                                 <  SRR4302537.5390784/94‑1 (MQ=60)

                              AGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCC                                                                >  SRR4302537.1857947/1‑94 (MQ=60)

                               GACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCA                                                               <  SRR4302537.1657493/94‑1 (MQ=60)

                                 CGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATGCAGTTGCTGGAAGGGCCATA                                                             <  SRR4302537.4388559/94‑1 (MQ=60)

                                  GCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATAC                                                            >  SRR4302537.5150352/1‑94 (MQ=60)

                                  GCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATAC                                                            <  SRR4302537.5459721/94‑1 (MQ=60)

                                   CTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACG                                                           >  SRR4302537.1681208/1‑94 (MQ=60)

                                   CTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACG                                                           >  SRR4302537.5747028/1‑94 (MQ=60)

                                     GGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTT                                                         <  SRR4302537.2903147/94‑1 (MQ=60)

                                     GGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTT                                                         <  SRR4302537.4621410/94‑1 (MQ=60)

                                     GGAAGGGGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTT                                                         >  SRR4302537.762586/1‑94 (MQ=60)

                                       AAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGA                                                       >  SRR4302537.5247764/1‑94 (MQ=60)

                                          GTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAAC                                                    <  SRR4302537.4170330/94‑1 (MQ=60)

                                           TGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACG                                                   <  SRR4302537.1447187/94‑1 (MQ=60)

                                           TGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACG                                                   <  SRR4302537.3104925/94‑1 (MQ=60)

                                            GTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGG                                                  >  SRR4302537.663316/1‑94 (MQ=60)

                                             TGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGC                                                 >  SRR4302537.1965128/1‑94 (MQ=60)

                                              GAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCA                                                >  SRR4302537.4607015/1‑94 (MQ=60)

                                              GAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCA                                                >  SRR4302537.4983000/1‑94 (MQ=60)

                                              GAAGGACGCTGAGGGTAACGTTGTGGTACACGGGATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCA                                                >  SRR4302537.5958165/1‑94 (MQ=60)

                                                AGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACC                                              <  SRR4302537.4482605/94‑1 (MQ=60)

                                                 GGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCG                                             <  SRR4302537.1855253/94‑1 (MQ=60)

                                                  GACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGG                                            <  SRR4302537.4814331/94‑1 (MQ=60)

                                                  GACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGG                                            <  SRR4302537.5909751/94‑1 (MQ=60)

                                                    CGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAA                                          >  SRR4302537.1968862/1‑94 (MQ=60)

                                                    CGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAA                                          >  SRR4302537.4057736/1‑94 (MQ=60)

                                                     GCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAG                                         >  SRR4302537.1348726/1‑94 (MQ=60)

                                                     GCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAG                                         <  SRR4302537.6290635/94‑1 (MQ=60)

                                                       TGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTG                                       >  SRR4302537.783059/1‑94 (MQ=60)

                                                         AGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGT                                     >  SRR4302537.2627844/1‑94 (MQ=60)

                                                         AGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGT                                     >  SRR4302537.6426320/1‑94 (MQ=60)

                                                         AGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGT                                     <  SRR4302537.5414818/94‑1 (MQ=60)

                                                         AGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGT                                     >  SRR4302537.4147101/1‑94 (MQ=60)

                                                          GGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTT                                    <  SRR4302537.3355636/94‑1 (MQ=60)

                                                          GGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTT                                    >  SRR4302537.2047983/1‑94 (MQ=60)

                                                          GGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTT                                    <  SRR4302537.4525895/94‑1 (MQ=60)

                                                            GTAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCAATACGTTGAAACGGCACCGGAAGTGGTTGC                                  <  SRR4302537.194090/94‑1 (MQ=60)

                                                             TAACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCA                                 >  SRR4302537.6139204/1‑94 (MQ=60)

                                                              AACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAG                                <  SRR4302537.5160779/94‑1 (MQ=60)

                                                              AACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAG                                >  SRR4302537.5898710/1‑94 (MQ=60)

                                                               ACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGC                               <  SRR4302537.1674323/94‑1 (MQ=60)

                                                               ACGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGC                               >  SRR4302537.3805127/1‑94 (MQ=60)

                                                                CGTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCA                              >  SRR4302537.6516833/1‑94 (MQ=60)

                                                                 GTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAT                             >  SRR4302537.5956933/1‑94 (MQ=60)

                                                                 GTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAT                             >  SRR4302537.436993/1‑94 (MQ=60)

                                                                 GTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAT                             <  SRR4302537.2309505/94‑1 (MQ=60)

                                                                 GTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAT                             <  SRR4302537.4250614/94‑1 (MQ=60)

                                                                 GTTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCAT                             >  SRR4302537.2441442/1‑94 (MQ=60)

                                                                  TTGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATT                            <  SRR4302537.4267096/94‑1 (MQ=60)

                                                                   TGTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTCGCTGGAAGGTCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTC                           <  SRR4302537.3812329/94‑1 (MQ=60)

                                                                    GTGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCA                          >  SRR4302537.116717/1‑94 (MQ=60)

                                                                     TGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAG                         >  SRR4302537.2441769/1‑94 (MQ=60)

                                                                     TGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAG                         >  SRR4302537.3577478/1‑94 (MQ=60)

                                                                     TGGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAG                         <  SRR4302537.3120033/94‑1 (MQ=60)

                                                                      GGTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGA                        <  SRR4302537.4591561/94‑1 (MQ=60)

                                                                       GTACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGAC                       >  SRR4302537.1048217/1‑94 (MQ=60)

                                                                         ACACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCG                     <  SRR4302537.3197414/94‑1 (MQ=60)

                                                                         ACACGGTATTTTTGCCAGCGCAACGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCG                     >  SRR4302537.2986278/1‑94 (MQ=60)

                                                                          CACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAACGGGCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGA                    >  SRR4302537.1368956/1‑94 (MQ=60)

                                                                           ACGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAA                   <  SRR4302537.404275/94‑1 (MQ=60)

                                                                            CGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAG                  <  SRR4302537.5798631/94‑1 (MQ=60)

                                                                            CGGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAG                  <  SRR4302537.2469717/94‑1 (MQ=60)

                                                                             GGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGA                 <  SRR4302537.5703889/94‑1 (MQ=60)

                                                                             GGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGA                 <  SRR4302537.861955/94‑1 (MQ=60)

                                                                             GGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGA                 <  SRR4302537.2795697/94‑1 (MQ=60)

                                                                             GGTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGA                 >  SRR4302537.4690545/1‑94 (MQ=60)

                                                                              GTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAG                >  SRR4302537.1398024/1‑94 (MQ=60)

                                                                              GTATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAG                <  SRR4302537.3897789/94‑1 (MQ=60)

                                                                               TATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGT               <  SRR4302537.220518/94‑1 (MQ=60)

                                                                               TATTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGG               >  SRR4302537.5946803/1‑94 (MQ=60)

                                                                                 TTTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAAACCGAAGAGTGC             <  SRR4302537.415042/94‑1 (MQ=60)

                                                                                  TTTTGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCA            <  SRR4302537.1691145/94‑1 (MQ=60)

                                                                                    TTGCCGGCGCGCCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAG          <  SRR4302537.5175595/94‑1 (MQ=60)

                                                                                     TGCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGA         <  SRR4302537.3467608/94‑1 (MQ=60)

                                                                                      GCCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGTCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGAC        <  SRR4302537.3371142/94‑1 (MQ=60)

                                                                                       CCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACG       >  SRR4302537.3150582/1‑94 (MQ=60)

                                                                                       CCAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACG       <  SRR4302537.5353610/94‑1 (MQ=60)

                                                                                        CAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGC      >  SRR4302537.2285388/1‑94 (MQ=60)

                                                                                        CAGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGC      >  SRR4302537.5503885/1‑94 (MQ=60)

                                                                                         AGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCG     <  SRR4302537.6305894/94‑1 (MQ=60)

                                                                                         AGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCG     >  SRR4302537.2171037/1‑94 (MQ=60)

                                                                                         AGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCG     >  SRR4302537.513594/1‑94 (MQ=60)

                                                                                         AGCGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCG     <  SRR4302537.5209060/94‑1 (MQ=60)

                                                                                           CGCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGAC   >  SRR4302537.4099653/1‑94 (MQ=60)

                                                                                            GCACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACG  <  SRR4302537.4758551/94‑1 (MQ=60)

ACTTACCCGGTCAGCCGAAGTCTATTAAAGAGACGCTGGAAGGTGTGAAGGACGCTGAGGGTAACGTTGTGGTACACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACG  >  NC_000913/9697‑9882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`