Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	78,003	A→C	E128A (GAG→GCG)	yabM →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	78,003	0	A	C	100.0%	803.0 / NA	227	E128A (GAG→GCG)	yabM	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (125/102); total (125/102)

Only 100 of 238 total aligned reads displayed.

CATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGAGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTC  >  NC_000913/77913‑78092

cATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGgcgc                                                                                         <  1:2629489/93‑1 (MQ=255)

cATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGgcgc                                                                                         >  1:1886834/1‑93 (MQ=255)

 aTTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGcgcg                                                                                        >  2:4430850/1‑93 (MQ=255)

 aTTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGcgcg                                                                                        >  1:5503781/1‑93 (MQ=255)

  tttAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCgg                                                                                       >  1:2408499/1‑93 (MQ=255)

      aTCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAat                                                                                   <  1:1425752/93‑1 (MQ=255)

       tCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAata                                                                                  <  2:728412/93‑1 (MQ=255)

       tCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAata                                                                                  <  1:3358292/93‑1 (MQ=255)

        cGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAatat                                                                                 >  1:5102491/1‑93 (MQ=255)

        cGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAatat                                                                                 <  1:3233273/93‑1 (MQ=255)

         gTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTTGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATg                                                                                >  1:2236514/1‑93 (MQ=255)

          tCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGc                                                                               <  1:2992294/93‑1 (MQ=255)

            aTTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCgg                                                                             >  2:3795916/1‑93 (MQ=255)

            aTTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCgg                                                                             >  1:1122546/1‑93 (MQ=255)

             ttATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGa                                                                            >  1:3435838/1‑93 (MQ=255)

             ttATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGa                                                                            >  1:5316275/1‑93 (MQ=255)

              tATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGAt                                                                           >  1:1034575/1‑93 (MQ=255)

               aTCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGAtc                                                                          >  1:6204832/1‑92 (MQ=255)

               aTCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATa                                                                          >  2:3738110/1‑93 (MQ=255)

                  tGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACt                                                                       <  2:1471583/93‑1 (MQ=255)

                  tGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACt                                                                       >  1:1338056/1‑93 (MQ=255)

                   gACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTc                                                                      >  2:2597541/1‑93 (MQ=255)

                   gACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTc                                                                      >  2:3055701/1‑93 (MQ=255)

                     cGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCgg                                                                    <  2:4684748/93‑1 (MQ=255)

                     cGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCgg                                                                    <  2:5887497/93‑1 (MQ=255)

                     cGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCgg                                                                    <  1:4356732/93‑1 (MQ=255)

                      gCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGgc                                                                   <  2:1820270/93‑1 (MQ=255)

                      gCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGgc                                                                   >  2:533747/1‑93 (MQ=255)

                      gCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGgc                                                                   >  1:5123578/1‑93 (MQ=255)

                       cTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGgcg                                                                  >  1:5769041/1‑93 (MQ=255)

                        ttATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGgcgc                                                                 >  1:2349555/1‑93 (MQ=255)

                          aTCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCga                                                               <  1:1257272/93‑1 (MQ=255)

                          aTCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCga                                                               >  2:2037437/1‑93 (MQ=255)

                          aTCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCga                                                               <  2:3896728/93‑1 (MQ=255)

                           tCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCgag                                                              >  1:1787635/1‑93 (MQ=255)

                            cACCTGTGGTGTGCTTCTGGTATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCgaga                                                             <  1:3825922/93‑1 (MQ=255)

                            cACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCgaga                                                             <  1:6248045/93‑1 (MQ=255)

                             aCCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCgagga                                                            >  2:1345085/1‑91 (MQ=255)

                             aCCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGaa                                                            >  2:5752941/1‑93 (MQ=255)

                              ccTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAg                                                           <  1:2842328/93‑1 (MQ=255)

                              ccTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAg                                                           >  2:5379598/1‑93 (MQ=255)

                              ccTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAg                                                           >  1:300430/1‑93 (MQ=255)

                              ccTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAg                                                           <  2:2365510/93‑1 (MQ=255)

                              ccTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAg                                                           <  2:3585267/93‑1 (MQ=255)

                              ccTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAg                                                           <  2:4961851/93‑1 (MQ=255)

                                tgtgGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAgtg                                                         >  1:2522085/1‑93 (MQ=255)

                                  ttgtgtGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAgtggt                                                       <  2:2304188/91‑1 (MQ=255)

                                  tggtgTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAgtggt                                                       >  1:981216/1‑93 (MQ=255)

                                  tggtgTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAgtggt                                                       <  1:5913475/93‑1 (MQ=255)

                                  tggtgTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAgtggt                                                       >  2:2227553/1‑93 (MQ=255)

                                  tggtgTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAgtggt                                                       <  2:5163072/93‑1 (MQ=255)

                                   ggtgTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAgtggtg                                                      >  1:3874132/1‑93 (MQ=255)

                                     tgtgCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGAt                                                    >  1:2645530/1‑93 (MQ=255)

                                     tgtgCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGGGAt                                                    >  1:1539499/1‑93 (MQ=255)

                                      gtgCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATg                                                   <  1:2035958/93‑1 (MQ=255)

                                      gtgCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATg                                                   >  1:4992766/1‑93 (MQ=255)

                                        gCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGTGGATAACTCGGCGCGAGAAGTGGTGATGtt                                                 <  2:1477238/93‑1 (MQ=255)

                                         cTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGttt                                                >  2:6425750/1‑93 (MQ=255)

                                          ttCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTa                                               >  1:2957552/1‑93 (MQ=255)

                                          ttCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTa                                               >  1:5440412/1‑93 (MQ=255)

                                               gCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCg                                          >  1:3545519/1‑93 (MQ=255)

                                               gCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCg                                          >  2:2672323/1‑93 (MQ=255)

                                               gCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCg                                          >  2:2875507/1‑93 (MQ=255)

                                                cATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCgg                                         >  1:2353756/1‑93 (MQ=255)

                                                 ctgtctGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGt                                        <  2:5417036/90‑1 (MQ=255)

                                                 aTCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGt                                        >  2:3504661/1‑93 (MQ=255)

                                                  tctcTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGTTGATGTTTAGCTCGGTg                                       >  1:1666658/1‑93 (MQ=255)

                                                  tctcTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTg                                       >  2:4301479/1‑93 (MQ=255)

                                                   ctctGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGa                                      <  1:2750336/93‑1 (MQ=255)

                                                   ctctGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGa                                      <  2:2508721/93‑1 (MQ=255)

                                                   ctctGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGCGATGTTTAGCTCGGTGa                                      >  1:4553212/1‑93 (MQ=255)

                                                    tctGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAt                                     >  2:1292335/1‑93 (MQ=255)

                                                     ctGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAtg                                    >  2:1032070/1‑93 (MQ=255)

                                                      tGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAtgc                                   >  2:2073971/1‑93 (MQ=255)

                                                      tGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAtgc                                   <  1:4452343/93‑1 (MQ=255)

                                                      tGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAtgc                                   >  2:1940512/1‑93 (MQ=255)

                                                        gCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAtgcgt                                 <  1:1936858/93‑1 (MQ=255)

                                                          cAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAtgcgtgc                               <  1:212576/93‑1 (MQ=255)

                                                            aTACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTgcgc                             >  1:4173294/1‑93 (MQ=255)

                                                            aTACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTgcgc                             >  1:3308659/1‑93 (MQ=255)

                                                             tACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCa                            >  2:5203496/1‑93 (MQ=255)

                                                               cGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGc                          <  1:1024796/93‑1 (MQ=255)

                                                               cGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGc                          <  2:4185853/93‑1 (MQ=255)

                                                               cGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGc                          >  1:6459762/1‑93 (MQ=255)

                                                                  gaaTGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCttt                       <  1:1297756/92‑1 (MQ=255)

                                                                   aaTGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTtc                      >  1:2415124/1‑93 (MQ=255)

                                                                       ccACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTg                  <  2:1608929/93‑1 (MQ=255)

                                                                       ccACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTg                  >  1:5554997/1‑93 (MQ=255)

                                                                          caGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCa               <  2:1745874/93‑1 (MQ=255)

                                                                          caGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCa               >  1:305754/1‑93 (MQ=255)

                                                                          caGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCa               >  2:5700895/1‑93 (MQ=255)

                                                                            gTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATg             <  1:1834720/93‑1 (MQ=255)

                                                                                 ttGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTa        >  2:6054455/1‑93 (MQ=255)

                                                                                   gCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATc      <  1:4059874/93‑1 (MQ=255)

                                                                                   gCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATc      >  2:5934261/1‑93 (MQ=255)

                                                                                     tctGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCgg    <  2:3446090/93‑1 (MQ=255)

                                                                                     tctGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTAGCATGGGTTATCgg    >  2:4114253/1‑93 (MQ=255)

                                                                                      ctGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGt   >  1:2366792/1‑93 (MQ=255)

                                                                                       tGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTc  <  2:5456905/93‑1 (MQ=255)

                                                                                       tGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTc  <  2:426811/93‑1 (MQ=255)

CATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGAGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTC  >  NC_000913/77913‑78092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGCATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGAGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTCCAC  >  NC_000913/77910‑78095

TTGCATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGC                                                                                              <  SRR4302537.217328/94‑1 (MQ=60)

TTGCATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGC                                                                                              <  SRR4302537.1371259/94‑1 (MQ=60)

TTGCATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGC                                                                                              >  SRR4302537.1311122/1‑94 (MQ=60)

  GCATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGC                                                                                            >  SRR4302537.1899955/1‑94 (MQ=60)

  GCATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGC                                                                                            <  SRR4302537.2495435/94‑1 (MQ=60)

   CATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCG                                                                                           <  SRR4302537.2647901/94‑1 (MQ=60)

   CATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCG                                                                                           >  SRR4302537.1330989/1‑94 (MQ=60)

   CATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCG                                                                                           >  SRR4302537.2373085/1‑94 (MQ=60)

   CATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCG                                                                                           >  SRR4302537.5541363/1‑94 (MQ=60)

    ATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGG                                                                                          >  SRR4302537.2425455/1‑94 (MQ=60)

    ATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGG                                                                                          >  SRR4302537.4054363/1‑94 (MQ=60)

    ATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGG                                                                                          >  SRR4302537.3637878/1‑94 (MQ=60)

     TTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGG                                                                                         <  SRR4302537.1408664/94‑1 (MQ=60)

     TTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGG                                                                                         >  SRR4302537.6390132/1‑94 (MQ=60)

       TAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAA                                                                                       >  SRR4302537.1572450/1‑94 (MQ=60)

         ATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATA                                                                                     >  SRR4302537.3864574/1‑94 (MQ=60)

         ATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATA                                                                                     <  SRR4302537.1435675/94‑1 (MQ=60)

          TCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATAT                                                                                    <  SRR4302537.3382080/94‑1 (MQ=60)

          TCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATAT                                                                                    >  SRR4302537.5137656/1‑94 (MQ=60)

           CGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTTGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATG                                                                                   >  SRR4302537.2252286/1‑94 (MQ=60)

           CGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATG                                                                                   <  SRR4302537.3256059/94‑1 (MQ=60)

            GTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGC                                                                                  >  SRR4302537.2293155/1‑94 (MQ=60)

             TCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCT                                                                                 <  SRR4302537.3013175/94‑1 (MQ=60)

             TCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCG                                                                                 <  SRR4302537.566549/94‑1 (MQ=60)

              CATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGG                                                                                <  SRR4302537.2431690/94‑1 (MQ=60)

              CATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGG                                                                                >  SRR4302537.1130330/1‑94 (MQ=60)

               ATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGA                                                                               >  SRR4302537.3460157/1‑94 (MQ=60)

               ATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGA                                                                               >  SRR4302537.5352780/1‑94 (MQ=60)

               ATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGA                                                                               >  SRR4302537.1856387/1‑94 (MQ=60)

                TTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGAT                                                                              >  SRR4302537.2726135/1‑94 (MQ=60)

                TTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGAT                                                                              <  SRR4302537.2369607/94‑1 (MQ=60)

                TTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGAT                                                                              <  SRR4302537.444449/94‑1 (MQ=60)

                TTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGAT                                                                              >  SRR4302537.1041702/1‑94 (MQ=60)

                 TATCTGACGCTTATCCCCTGTGGTGTGCTTCTGGCATCTCTGGCCAATCCGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATA                                                                             <  SRR4302537.2653890/94‑1 (MQ=60)

                 TATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATC                                                                             >  SRR4302537.6247593/1‑94 (MQ=60)

                 TATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATA                                                                             <  SRR4302537.3831878/94‑1 (MQ=60)

                 TATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATA                                                                             <  SRR4302537.2860003/94‑1 (MQ=60)

                  ATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAA                                                                            >  SRR4302537.616388/1‑94 (MQ=60)

                  ATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAA                                                                            >  SRR4302537.4507882/1‑94 (MQ=60)

                  ATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAA                                                                            <  SRR4302537.4347967/94‑1 (MQ=60)

                    CTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACT                                                                          <  SRR4302537.5060792/94‑1 (MQ=60)

                    CTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACT                                                                          >  SRR4302537.1347376/1‑94 (MQ=60)

                       ACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGG                                                                       <  SRR4302537.2448622/94‑1 (MQ=60)

                        CGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGC                                                                      <  SRR4302537.4386891/94‑1 (MQ=60)

                        CGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGC                                                                      >  SRR4302537.5158889/1‑94 (MQ=60)

                        CGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGC                                                                      <  SRR4302537.6262094/94‑1 (MQ=60)

                         GCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCG                                                                     >  SRR4302537.5808582/1‑94 (MQ=60)

                          CTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGC                                                                    >  SRR4302537.2366101/1‑94 (MQ=60)

                           TTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCG                                                                   <  SRR4302537.1230077/94‑1 (MQ=60)

                             ATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAG                                                                 >  SRR4302537.1800127/1‑94 (MQ=60)

                             ATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAG                                                                 <  SRR4302537.1266023/94‑1 (MQ=60)

                              TCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGA                                                                <  SRR4302537.5875543/94‑1 (MQ=60)

                               CACCTGTGGTGTGCTTCTGGTATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAA                                                               <  SRR4302537.3852749/94‑1 (MQ=60)

                               CACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAA                                                               <  SRR4302537.6290972/94‑1 (MQ=60)

                                ACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAG                                                              >  SRR4302537.302525/1‑94 (MQ=60)

                                 CCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGT                                                             <  SRR4302537.447818/94‑1 (MQ=60)

                                 CCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGT                                                             <  SRR4302537.2862222/94‑1 (MQ=60)

                                  CTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTG                                                            >  SRR4302537.2539789/1‑94 (MQ=60)

                                  CTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTG                                                            >  SRR4302537.5215560/1‑94 (MQ=60)

                                  CTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGCG                                                            >  SRR4302537.5548383/1‑94 (MQ=60)

                                   TGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGG                                                           >  SRR4302537.3023947/1‑94 (MQ=60)

                                    GTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGT                                                          >  SRR4302537.987992/1‑94 (MQ=60)

                                     TGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTG                                                         <  SRR4302537.5954063/94‑1 (MQ=60)

                                     TGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTG                                                         >  SRR4302537.3901233/1‑94 (MQ=60)

                                     TGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTG                                                         <  SRR4302537.150426/94‑1 (MQ=60)

                                       GTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGAT                                                       >  SRR4302537.2664033/1‑94 (MQ=60)

                                       GTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGGGAT                                                       >  SRR4302537.1550245/1‑94 (MQ=60)

                                        TGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGTTCTGGCGCGGGAATATGCGGAGAACTCGAGCCGAGAAGTGGAGATG                                                      >  SRR4302537.5027170/1‑94 (MQ=60)

                                        TGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATG                                                      >  SRR4302537.5116584/1‑94 (MQ=60)

                                        TGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATG                                                      >  SRR4302537.5027171/1‑94 (MQ=60)

                                        TGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATG                                                      >  SRR4302537.871157/1‑94 (MQ=60)

                                         GTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGT                                                     <  SRR4302537.2050148/94‑1 (MQ=60)

                                          TGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGGT                                                    >  SRR4302537.5432397/1‑94 (MQ=60)

                                            CTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTA                                                  >  SRR4302537.2978302/1‑94 (MQ=60)

                                            CTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTA                                                  >  SRR4302537.2978304/1‑94 (MQ=60)

                                            CTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTA                                                  >  SRR4302537.5477522/1‑94 (MQ=60)

                                              TCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGC                                                <  SRR4302537.1427324/94‑1 (MQ=60)

                                               CTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCT                                               <  SRR4302537.1890020/94‑1 (MQ=60)

                                               CTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCT                                               >  SRR4302537.556292/1‑94 (MQ=60)

                                                TGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTC                                              <  SRR4302537.1631785/94‑1 (MQ=60)

                                                 GGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCG                                             >  SRR4302537.3570561/1‑94 (MQ=60)

                                                  GCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGG                                            >  SRR4302537.2370352/1‑94 (MQ=60)

                                                   CATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGT                                           >  SRR4302537.3345571/1‑94 (MQ=60)

                                                   CATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGT                                           <  SRR4302537.2051874/94‑1 (MQ=60)

                                                    ATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGGAGTGGTGATGTTTAGCTCGGTG                                          >  SRR4302537.1285824/1‑94 (MQ=60)

                                                    ATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGTTGATGTTTAGCTCGGTG                                          >  SRR4302537.1678333/1‑94 (MQ=60)

                                                    ATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTG                                          >  SRR4302537.3378110/1‑94 (MQ=60)

                                                    ATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTG                                          <  SRR4302537.2402240/94‑1 (MQ=60)

                                                     TCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGA                                         <  SRR4302537.6367729/94‑1 (MQ=60)

                                                     TCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGCGATGTTTAGCTCGGTGA                                         >  SRR4302537.4584719/1‑94 (MQ=60)

                                                      CTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAT                                        <  SRR4302537.548719/94‑1 (MQ=60)

                                                      CTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGAT                                        <  SRR4302537.2769526/94‑1 (MQ=60)

                                                         TGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCG                                     <  SRR4302537.4483093/94‑1 (MQ=60)

                                                          GGCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGT                                    <  SRR4302537.2061/94‑1 (MQ=60)

                                                           GCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTG                                   <  SRR4302537.1950326/94‑1 (MQ=60)

                                                           GCCAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTG                                   >  SRR4302537.5311188/1‑94 (MQ=60)

                                                             CAATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCG                                 <  SRR4302537.214093/94‑1 (MQ=60)

                                                              AATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGGAGTGGTGATGTTTAGCTCGGTGATGCGTGCGC                                >  SRR4302537.2742941/1‑94 (MQ=60)

                                                              AATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGC                                >  SRR4302537.4202438/1‑94 (MQ=60)

                                                              AATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGC                                >  SRR4302537.3332063/1‑94 (MQ=60)

                                                              AATACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGC                                >  SRR4302537.30584/1‑94 (MQ=60)

                                                                 ACGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGC                             >  SRR4302537.6503539/1‑94 (MQ=60)

                                                                  CGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCT                            <  SRR4302537.258744/94‑1 (MQ=60)

                                                                  CGGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCT                            <  SRR4302537.1031846/94‑1 (MQ=60)

                                                                   GGCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTT                           >  SRR4302537.111267/1‑94 (MQ=60)

                                                                    GCAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTT                          <  SRR4302537.1039180/94‑1 (MQ=60)

                                                                     GAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTC                         <  SRR4302537.1306780/94‑1 (MQ=60)

                                                                     CAATGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTC                         >  SRR4302537.2432119/1‑94 (MQ=60)

                                                                        TGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCT                      <  SRR4302537.32667/94‑1 (MQ=60)

                                                                        TGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCT                      <  SRR4302537.5814335/94‑1 (MQ=60)

                                                                        TGCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCT                      <  SRR4302537.2633366/94‑1 (MQ=60)

                                                                         GCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTG                     >  SRR4302537.5592923/1‑94 (MQ=60)

                                                                         GCCACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGAGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTG                     >  SRR4302537.1807262/1‑94 (MQ=60)

                                                                          CCACAGGTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGG                    <  SRR4302537.1906965/94‑1 (MQ=60)

                                                                           CACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGC                   <  SRR4302537.170683/94‑1 (MQ=60)

                                                                           CACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGC                   >  SRR4302537.2015456/1‑94 (MQ=60)

                                                                           CACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGC                   <  SRR4302537.2278092/94‑1 (MQ=60)

                                                                           CACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGA                   >  SRR4302537.2192824/1‑94 (MQ=60)

                                                                            ACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCA                  >  SRR4302537.5146734/1‑94 (MQ=60)

                                                                            ACAGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCA                  >  SRR4302537.307873/1‑94 (MQ=60)

                                                                              AGTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATG                >  SRR4302537.1210181/1‑94 (MQ=60)

                                                                               GTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGG               <  SRR4302537.3012790/94‑1 (MQ=60)

                                                                               GTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGG               >  SRR4302537.3119846/1‑94 (MQ=60)

                                                                               GTTATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGG               <  SRR4302537.1847494/94‑1 (MQ=60)

                                                                                 TATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGT             <  SRR4302537.2904111/94‑1 (MQ=60)

                                                                                  ATTTGCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTT            <  SRR4302537.3540026/94‑1 (MQ=60)

                                                                                      GCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCG        <  SRR4302537.4088247/94‑1 (MQ=60)

                                                                                      GCTCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCG        >  SRR4302537.4099408/1‑94 (MQ=60)

                                                                                        TCTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGT      >  SRR4302537.2383475/1‑94 (MQ=60)

                                                                                         CTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTC     >  SRR4302537.3048251/1‑94 (MQ=60)

                                                                                         CTGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTC     <  SRR4302537.4072602/94‑1 (MQ=60)

                                                                                          TGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTCC    >  SRR4302537.5718090/1‑94 (MQ=60)

                                                                                          TGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTCC    <  SRR4302537.241389/94‑1 (MQ=60)

                                                                                          TGGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTCC    <  SRR4302537.3456861/94‑1 (MQ=60)

                                                                                           GGCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTCCA   >  SRR4302537.1674258/1‑94 (MQ=60)

                                                                                            GCGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTCCAC  >  SRR4302537.4895165/1‑94 (MQ=60)

TTGCATTTAATCGTCATTATCTGACGCTTATCACCTGTGGTGTGCTTCTGGCATCTCTGGCCAATACGGCAATGCCACAGTTATTTGCTCTGGAGCGGGAATATGCGGATAACTCGGCGCGAGAAGTGGTGATGTTTAGCTCGGTGATGCGTGCGCAGCTTTCTCTGGCATGGGTTATCGGTCCAC  >  NC_000913/77910‑78095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`