Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 170,527 T→C G250G (GGT→GGC)  fhuC → ATP‑binding component of hydroxymate‑dependent iron transport

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913170,5270TC100.0% 743.7 / NA 213G250G (GGT→GGC) fhuCATP‑binding component of hydroxymate‑dependent iron transport
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (122/91);  total (122/91)

Only 100 of 216 total aligned reads displayed.

CCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGTATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACG  >  NC_000913/170437‑170616
                                                                                          |                                                                                         
ccTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAt                                                                                         <  2:6216510/93‑1 (MQ=255)
 cTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAtt                                                                                        >  1:3733617/1‑93 (MQ=255)
 cTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAtt                                                                                        >  1:3653544/1‑93 (MQ=255)
 cTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAtt                                                                                        >  1:2436077/1‑93 (MQ=255)
  tGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAttt                                                                                       >  2:614164/1‑93 (MQ=255)
   gcgcGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAtttt                                                                                      <  2:5100636/93‑1 (MQ=255)
   gcgcGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAtttt                                                                                      <  2:3064122/93‑1 (MQ=255)
      cggcggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGcc                                                                                   <  2:4199470/93‑1 (MQ=255)
      cggcggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGcc                                                                                   >  1:4979734/1‑93 (MQ=255)
        gcggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGc                                                                                 <  2:842807/93‑1 (MQ=255)
         cggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCa                                                                                <  1:1023588/93‑1 (MQ=255)
         cggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCa                                                                                <  2:4009618/93‑1 (MQ=255)
         cggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCa                                                                                <  2:519167/93‑1 (MQ=255)
         cggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCa                                                                                <  1:4489039/93‑1 (MQ=255)
          ggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCAt                                                                               >  1:833662/1‑93 (MQ=255)
          ggTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCAt                                                                               >  1:5338460/1‑93 (MQ=255)
           gTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATc                                                                              >  1:5630257/1‑93 (MQ=255)
           gTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATc                                                                              >  1:4239309/1‑93 (MQ=255)
             gAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCcg                                                                            >  2:3496490/1‑93 (MQ=255)
             gAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCcg                                                                            <  2:6459759/93‑1 (MQ=255)
              aaaTGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCcgg                                                                           >  1:655261/1‑93 (MQ=255)
                aTGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCcggcg                                                                         <  2:1289059/93‑1 (MQ=255)
                aTGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCcggcg                                                                         >  2:2011328/1‑93 (MQ=255)
                  gATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCggg                                                                       <  2:4330727/93‑1 (MQ=255)
                  gATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCggg                                                                       >  1:4301124/1‑93 (MQ=255)
                  gATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCggg                                                                       >  2:2094524/1‑93 (MQ=255)
                   aTTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGt                                                                      <  2:7533/93‑1 (MQ=255)
                    ttGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGtg                                                                     >  1:410125/1‑93 (MQ=255)
                     tGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGtgc                                                                    <  2:2870087/93‑1 (MQ=255)
                     tGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGtgc                                                                    >  2:5547039/1‑93 (MQ=255)
                     tGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGtgc                                                                    <  1:3148540/93‑1 (MQ=255)
                       cTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGtgctg                                                                  >  2:1630946/1‑93 (MQ=255)
                          aGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCAc                                                               >  2:4046202/1‑93 (MQ=255)
                          aGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCAc                                                               >  1:2322589/1‑93 (MQ=255)
                              gaCGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATACGGCGGGTGCGGCACCtgt                                                           <  2:6319079/92‑1 (MQ=255)
                              aaCGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCtgt                                                           >  1:6407848/1‑93 (MQ=255)
                               aCGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCtgtg                                                          <  2:439532/93‑1 (MQ=255)
                                cGCCTGCTGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGAGGGGCATTATGCCGCATCCGGCGGGTGGTGCACCTGTGa                                                         <  2:121019/93‑1 (MQ=255)
                                cGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGa                                                         >  2:6430097/1‑93 (MQ=255)
                                 gCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAg                                                        <  2:5888186/93‑1 (MQ=255)
                                     gCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGtttt                                                    <  1:3776885/93‑1 (MQ=255)
                                      cGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTg                                                   >  1:2507787/1‑93 (MQ=255)
                                       ggAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGt                                                  >  1:2283097/1‑93 (MQ=255)
                                        gAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGtt                                                 <  2:2495113/93‑1 (MQ=255)
                                        gAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCAGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGtt                                                 >  2:2540240/1‑93 (MQ=255)
                                            ttATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTAtt                                             >  1:3631341/1‑93 (MQ=255)
                                            ttATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGGTTAtt                                             >  1:1143816/1‑93 (MQ=255)
                                               tGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATtgat                                          <  2:3423962/93‑1 (MQ=255)
                                               tGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATtgat                                          >  2:5655560/1‑93 (MQ=255)
                                               tGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATtgat                                          >  2:1418011/1‑93 (MQ=255)
                                               tGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATtgat                                          >  1:1219899/1‑93 (MQ=255)
                                                 cgcgGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATtgatga                                        <  1:5173528/93‑1 (MQ=255)
                                                 cgcgGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATtgatga                                        <  1:2215073/93‑1 (MQ=255)
                                                  gcggcgAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAg                                       <  1:4888064/93‑1 (MQ=255)
                                                   cggcgAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGc                                      <  2:4849417/93‑1 (MQ=255)
                                                      cgAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGc                                   <  1:4741734/93‑1 (MQ=255)
                                                       gAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCt                                  <  2:2789962/93‑1 (MQ=255)
                                                        aaaCCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCtt                                 >  2:6056764/1‑93 (MQ=255)
                                                         aaCCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTa                                >  1:5174309/1‑93 (MQ=255)
                                                         aaCCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGCTTTGTTTATTGATGAGCGGCTTa                                >  1:1403731/1‑93 (MQ=255)
                                                          aCCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTAc                               >  1:887035/1‑93 (MQ=255)
                                                           cccTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTAcc                              <  1:1067656/93‑1 (MQ=255)
                                                           cccTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTAcc                              >  1:2265163/1‑93 (MQ=255)
                                                            ccTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACct                             >  1:1159648/1‑93 (MQ=255)
                                                             cTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACctc                            >  2:2325788/1‑93 (MQ=255)
                                                             cTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACctc                            >  1:4940867/1‑93 (MQ=255)
                                                             cTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACctc                            >  1:6092036/1‑93 (MQ=255)
                                                               cGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCtt                          <  1:2025386/93‑1 (MQ=255)
                                                               cGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCtt                          <  1:2829970/93‑1 (MQ=255)
                                                               cGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCtt                          <  2:3251739/93‑1 (MQ=255)
                                                                gAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTa                         >  2:2135441/1‑93 (MQ=255)
                                                                gAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTa                         <  1:6181409/93‑1 (MQ=255)
                                                                 aaaTGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTAt                        >  2:3761807/1‑93 (MQ=255)
                                                                 aaaTGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTAt                        >  2:3555932/1‑93 (MQ=255)
                                                                  aaTGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTAtt                       <  2:4547814/93‑1 (MQ=255)
                                                                    tGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGGTTTGTTTATTGATGAGCGGCTTACCTCTTATTTc                     >  2:5552520/1‑93 (MQ=255)
                                                                       tttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTcgcg                  >  2:3919242/1‑93 (MQ=255)
                                                                       tttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTcgcg                  >  1:3606297/1‑93 (MQ=255)
                                                                       tttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTcgcg                  >  2:543309/1‑93 (MQ=255)
                                                                       tttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTcgcg                  >  2:5288581/1‑93 (MQ=255)
                                                                        ttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCgcgc                 <  2:5417282/93‑1 (MQ=255)
                                                                        ttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCgcgc                 >  1:5389825/1‑93 (MQ=255)
                                                                        ttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCgcgc                 >  2:4362320/1‑93 (MQ=255)
                                                                        ttATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGCTTATTGATGAGCGGCTTACCTCTTATTTCgcgc                 >  1:2014516/1‑93 (MQ=255)
                                                                          aTGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCg               >  1:5824768/1‑93 (MQ=255)
                                                                          aTGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCg               >  1:1794345/1‑93 (MQ=255)
                                                                           tGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGt              <  2:1800647/93‑1 (MQ=255)
                                                                               aTCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGAc          <  2:2723023/93‑1 (MQ=255)
                                                                               aTCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGAc          >  1:727332/1‑93 (MQ=255)
                                                                               aTCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGAc          <  1:6023828/93‑1 (MQ=255)
                                                                                tCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGATTACCTCTTATTTCGCGCCGTCGAcg         >  2:1192209/1‑92 (MQ=255)
                                                                                  ccGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGt       <  2:1667147/93‑1 (MQ=255)
                                                                                   cGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGtt      <  1:3317498/93‑1 (MQ=255)
                                                                                    gATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTa     >  1:5703017/1‑93 (MQ=255)
                                                                                     aTGGGCATTTTGCCGCCTCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGCCTTCCCTCTTATTTCGCGCCGTCGACTGTTaa    <  2:1589460/93‑1 (MQ=255)
                                                                                      tGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAAc   >  2:107695/1‑93 (MQ=255)
                                                                                      tGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAAc   >  1:4612331/1‑93 (MQ=255)
                                                                                      tGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAAc   >  1:2623287/1‑93 (MQ=255)
                                                                                       gggCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACg  <  1:3209379/93‑1 (MQ=255)
                                                                                       gggCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACg  <  2:3643039/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGTATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACG  >  NC_000913/170437‑170616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGTATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGGCG  >  NC_000913/170434‑170619
                                                                                             |                                                                                            
CGCCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGC                                                                                              <  SRR4302537.5899268/94‑1 (MQ=60)
CGCCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGC                                                                                              <  SRR4302537.2660136/94‑1 (MQ=60)
 GCCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCA                                                                                             <  SRR4302537.5157113/94‑1 (MQ=60)
 GCCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCA                                                                                             >  SRR4302537.6280446/1‑94 (MQ=60)
  CCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAT                                                                                            >  SRR4302537.938568/1‑94 (MQ=60)
  CCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAT                                                                                            <  SRR4302537.2744096/94‑1 (MQ=60)
  CCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAT                                                                                            >  SRR4302537.4131200/1‑94 (MQ=60)
  CCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAT                                                                                            <  SRR4302537.2606640/94‑1 (MQ=60)
   CCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATT                                                                                           >  SRR4302537.3759840/1‑94 (MQ=60)
   CCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATT                                                                                           >  SRR4302537.3679255/1‑94 (MQ=60)
   CCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATT                                                                                           >  SRR4302537.2453238/1‑94 (MQ=60)
     TGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTT                                                                                         <  SRR4302537.3642695/94‑1 (MQ=60)
     TGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTT                                                                                         <  SRR4302537.1155272/94‑1 (MQ=60)
      GCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTG                                                                                        <  SRR4302537.2129370/94‑1 (MQ=60)
        GCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCC                                                                                      >  SRR4302537.5014054/1‑94 (MQ=60)
           GCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCA                                                                                   <  SRR4302537.1753860/94‑1 (MQ=60)
            CGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCAT                                                                                  >  SRR4302537.839368/1‑94 (MQ=60)
            CGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCAT                                                                                  <  SRR4302537.1030634/94‑1 (MQ=60)
            CGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCAT                                                                                  >  SRR4302537.5375056/1‑94 (MQ=60)
            CGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCAT                                                                                  <  SRR4302537.4520092/94‑1 (MQ=60)
             GGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATC                                                                                 >  SRR4302537.1999183/1‑94 (MQ=60)
             GGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATC                                                                                 >  SRR4302537.4268788/1‑94 (MQ=60)
             GGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATC                                                                                 >  SRR4302537.5668775/1‑94 (MQ=60)
                GAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGG                                                                              >  SRR4302537.5437497/1‑94 (MQ=60)
                GAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGG                                                                              >  SRR4302537.859656/1‑94 (MQ=60)
                GAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGG                                                                              >  SRR4302537.659728/1‑94 (MQ=60)
                GAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGG                                                                              <  SRR4302537.2347138/94‑1 (MQ=60)
                 AAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGC                                                                             <  SRR4302537.6074388/94‑1 (MQ=60)
                 AAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGC                                                                             >  SRR4302537.4969878/1‑94 (MQ=60)
                    TGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGG                                                                          >  SRR4302537.4331015/1‑94 (MQ=60)
                      ATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTG                                                                        >  SRR4302537.412964/1‑94 (MQ=60)
                       TTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGC                                                                       >  SRR4302537.2616877/1‑94 (MQ=60)
                        TGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCT                                                                      <  SRR4302537.4569522/94‑1 (MQ=60)
                        TGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCT                                                                      <  SRR4302537.3170623/94‑1 (MQ=60)
                            CAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCAC                                                                  >  SRR4302537.2338988/1‑94 (MQ=60)
                                GAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGT                                                              >  SRR4302537.6451455/1‑94 (MQ=60)
                                    GCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGT                                                          <  SRR4302537.318615/94‑1 (MQ=60)
                                    GCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGT                                                          >  SRR4302537.1813212/1‑94 (MQ=60)
                                     CCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTT                                                         >  SRR4302537.796369/1‑94 (MQ=60)
                                        GCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTG                                                      <  SRR4302537.3803403/94‑1 (MQ=60)
                                        GCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTG                                                      >  SRR4302537.2525431/1‑94 (MQ=60)
                                         CGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGT                                                     >  SRR4302537.2299205/1‑94 (MQ=60)
                                         CGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGT                                                     >  SRR4302537.4290282/1‑94 (MQ=60)
                                         CGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGT                                                     >  SRR4302537.3660821/1‑94 (MQ=60)
                                            AAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTA                                                  <  SRR4302537.4013787/94‑1 (MQ=60)
                                            AAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCAGTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTA                                                  <  SRR4302537.5313617/94‑1 (MQ=60)
                                             AATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTAT                                                 <  SRR4302537.1275197/94‑1 (MQ=60)
                                             AATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTAT                                                 <  SRR4302537.5633965/94‑1 (MQ=60)
                                              ATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATT                                                >  SRR4302537.674251/1‑94 (MQ=60)
                                              ATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATT                                                >  SRR4302537.3656926/1‑94 (MQ=60)
                                              ATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGGTTATT                                                >  SRR4302537.1151770/1‑94 (MQ=60)
                                               TTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTG                                               <  SRR4302537.5004602/94‑1 (MQ=60)
                                                TATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGA                                              <  SRR4302537.646953/94‑1 (MQ=60)
                                                TATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGA                                              <  SRR4302537.6252889/94‑1 (MQ=60)
                                                 ATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGAT                                             >  SRR4302537.2809637/1‑94 (MQ=60)
                                                 ATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGAT                                             >  SRR4302537.1228385/1‑94 (MQ=60)
                                                  TGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATG                                            <  SRR4302537.2297470/94‑1 (MQ=60)
                                                   GCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGA                                           <  SRR4302537.3996541/94‑1 (MQ=60)
                                                    CGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAG                                          <  SRR4302537.5209141/94‑1 (MQ=60)
                                                    CGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAG                                          >  SRR4302537.4779680/1‑94 (MQ=60)
                                                    CGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAG                                          <  SRR4302537.2230694/94‑1 (MQ=60)
                                                     GCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGC                                         <  SRR4302537.4921816/94‑1 (MQ=60)
                                                      CGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCG                                        <  SRR4302537.2468896/94‑1 (MQ=60)
                                                      CGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCG                                        >  SRR4302537.2247242/1‑94 (MQ=60)
                                                       GGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGG                                       >  SRR4302537.5906757/1‑94 (MQ=60)
                                                         CGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCT                                     <  SRR4302537.4774504/94‑1 (MQ=60)
                                                         CGAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGGTTTGTTTATTGATGAGAGGCT                                     >  SRR4302537.121310/1‑94 (MQ=60)
                                                          GAAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTT                                    <  SRR4302537.3275103/94‑1 (MQ=60)
                                                           AAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTA                                   >  SRR4302537.5209925/1‑94 (MQ=60)
                                                           AAACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGCTTTGTTTATTGATGAGCGGCTTA                                   >  SRR4302537.1413506/1‑94 (MQ=60)
                                                            AACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTAC                                  >  SRR4302537.893138/1‑94 (MQ=60)
                                                            AACCCTCGAAATGATTTATGGCATCCCAATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTAC                                  >  SRR4302537.6252940/1‑94 (MQ=60)
                                                             ACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACC                                 <  SRR4302537.1063291/94‑1 (MQ=60)
                                                             ACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACC                                 <  SRR4302537.476810/94‑1 (MQ=60)
                                                             ACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACC                                 >  SRR4302537.2281157/1‑94 (MQ=60)
                                                             ACCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACC                                 <  SRR4302537.3792284/94‑1 (MQ=60)
                                                              CCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCT                                <  SRR4302537.1075012/94‑1 (MQ=60)
                                                              CCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCT                                >  SRR4302537.1167717/1‑94 (MQ=60)
                                                              CCCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCT                                >  SRR4302537.5837207/1‑94 (MQ=60)
                                                               CCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTC                               >  SRR4302537.4974940/1‑94 (MQ=60)
                                                               CCTCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTC                               >  SRR4302537.6133893/1‑94 (MQ=60)
                                                                 TCGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTT                             >  SRR4302537.2299769/1‑94 (MQ=60)
                                                                  CGGAATGATTTATGGCATCCCGAAGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTA                            <  SRR4302537.2039513/94‑1 (MQ=60)
                                                                  CGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTA                            <  SRR4302537.2849744/94‑1 (MQ=60)
                                                                  CGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTA                            >  SRR4302537.3741830/1‑94 (MQ=60)
                                                                  CGAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTA                            <  SRR4302537.2039514/94‑1 (MQ=60)
                                                                   GAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTAT                           <  SRR4302537.6223987/94‑1 (MQ=60)
                                                                   GAAATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTAT                           >  SRR4302537.5696970/1‑94 (MQ=60)
                                                                      ATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTC                        >  SRR4302537.1091173/1‑94 (MQ=60)
                                                                      ATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTC                        <  SRR4302537.3285314/94‑1 (MQ=60)
                                                                      ATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTC                        <  SRR4302537.5071856/94‑1 (MQ=60)
                                                                      ATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTC                        >  SRR4302537.239273/1‑94 (MQ=60)
                                                                      ATGATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTC                        >  SRR4302537.3524382/1‑94 (MQ=60)
                                                                         ATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCG                     >  SRR4302537.4333589/1‑94 (MQ=60)
                                                                         ATTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCG                     >  SRR4302537.3631712/1‑94 (MQ=60)
                                                                          TTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGC                    >  SRR4302537.5426650/1‑94 (MQ=60)
                                                                          TTTATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGCTTATTGATGAGCGGCTTACCTCTTATTTCGCGC                    >  SRR4302537.2028558/1‑94 (MQ=60)
                                                                            TATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCG                  >  SRR4302537.5864685/1‑94 (MQ=60)
                                                                            TATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCG                  >  SRR4302537.5380812/1‑94 (MQ=60)
                                                                            TATGGCATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCG                  >  SRR4302537.1806865/1‑94 (MQ=60)
                                                                                 CATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGAC             >  SRR4302537.732299/1‑94 (MQ=60)
                                                                                  ATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACT            <  SRR4302537.6065221/94‑1 (MQ=60)
                                                                                  ATCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACT            >  SRR4302537.6214916/1‑94 (MQ=60)
                                                                                   TCCCGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTG           >  SRR4302537.5209707/1‑94 (MQ=60)
                                                                                      CGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTA        >  SRR4302537.5742044/1‑94 (MQ=60)
                                                                                      CGATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTA        <  SRR4302537.3340972/94‑1 (MQ=60)
                                                                                        ATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAAC      >  SRR4302537.4644269/1‑94 (MQ=60)
                                                                                        ATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAAC      >  SRR4302537.2641671/1‑94 (MQ=60)
                                                                                        ATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAAC      >  SRR4302537.2870187/1‑94 (MQ=60)
                                                                                        ATGGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAAC      >  SRR4302537.4968795/1‑94 (MQ=60)
                                                                                          GGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGTCTGTTAACGC    >  SRR4302537.3288004/1‑94 (MQ=60)
                                                                                          GGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGG    <  SRR4302537.3231941/94‑1 (MQ=60)
                                                                                          GGGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGG    >  SRR4302537.987797/1‑94 (MQ=60)
                                                                                           GGCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGGC   >  SRR4302537.4128398/1‑94 (MQ=60)
                                                                                            GCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGGCG  <  SRR4302537.3317194/94‑1 (MQ=60)
                                                                                            GCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGGCG  >  SRR4302537.4256312/1‑94 (MQ=60)
                                                                                            GCATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGGCG  >  SRR4302537.4342588/1‑94 (MQ=60)
                                                                                             |                                                                                            
CGCCCTGCGCGGCGGTGAAATGATTGCTCAGGGAACGCCTGCGGAAATTATGCGCGGCGAAACCCTCGAAATGATTTATGGCATCCCGATGGGTATTTTGCCGCATCCGGCGGGTGCTGCACCTGTGAGTTTTGTTTATTGATGAGCGGCTTACCTCTTATTTCGCGCCGTCGACTGTTAACGGCG  >  NC_000913/170434‑170619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑