Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
187,433 |
A→G |
H406H (CAT→CAC) |
glnD ← |
protein PII |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 187,433 | 0 | A | G | 99.1%
| 777.8
/ ‑2.9
| 226 | H406H (CAT→CAC) | glnD | protein PII |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (122/102); total (124/102) |
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.81e-01 |
Only 100 of 229 total aligned reads displayed.
AATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACGCAA > NC_000913/187344‑187522
|
aaTAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTgg > 2:6397044/1‑93 (MQ=255)
aTAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGc < 2:3523530/93‑1 (MQ=255)
tAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCg > 1:1637459/1‑93 (MQ=255)
aGCCCGCTCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGa > 1:1030269/1‑93 (MQ=255)
cccGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACg < 1:3847839/93‑1 (MQ=255)
ccGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACgg < 2:1450733/93‑1 (MQ=255)
ccGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACgg < 2:4874305/93‑1 (MQ=255)
cgcgCCGCACCGCTCCGGGGTGACGCATAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACggg > 2:4791176/1‑93 (MQ=255)
cgcgCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACggg < 2:1727064/93‑1 (MQ=255)
gcgcCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGc > 1:1920395/1‑93 (MQ=255)
gcgcCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGc < 1:1024986/93‑1 (MQ=255)
ccgcACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATg > 1:5181496/1‑93 (MQ=255)
ccgcACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATg > 1:5605729/1‑93 (MQ=255)
ccgcACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATg < 1:4788743/93‑1 (MQ=255)
ccgcACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATg < 2:6223474/93‑1 (MQ=255)
cgcACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATgg < 2:6096313/93‑1 (MQ=255)
cgcACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATgg > 1:5757397/1‑93 (MQ=255)
gcACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGc > 1:1194135/1‑93 (MQ=255)
cACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCg < 2:5846401/93‑1 (MQ=255)
ccGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTa > 2:3364085/1‑93 (MQ=255)
ccGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTa < 2:5719243/93‑1 (MQ=255)
cGCTCCGGGGCGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTaa > 2:5322932/1‑93 (MQ=255)
gCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAAc > 1:4481803/1‑93 (MQ=255)
ccGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTgg < 1:4602049/93‑1 (MQ=255)
gggTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGgcgc > 2:1057927/1‑93 (MQ=255)
ggTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCa < 1:3965377/93‑1 (MQ=255)
gTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAg > 1:4755558/1‑93 (MQ=255)
gACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCg < 2:190251/93‑1 (MQ=255)
gACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCg > 2:3332642/1‑93 (MQ=255)
gCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCgtgg > 1:2871322/1‑93 (MQ=255)
gCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCgtgg < 2:420490/93‑1 (MQ=255)
gCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCgtgg > 2:6139072/1‑93 (MQ=255)
cAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCgtggt < 1:909517/93‑1 (MQ=255)
cAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCgtggg > 1:4367463/1‑92 (MQ=255)
aGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCgtggtg > 1:4896097/1‑93 (MQ=255)
gAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGtggtgg > 1:230759/1‑93 (MQ=255)
aTGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAg > 1:5079678/1‑93 (MQ=255)
tGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAga > 1:1145545/1‑92 (MQ=255)
tGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGt < 1:2163730/93‑1 (MQ=255)
tGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGt > 2:5399019/1‑93 (MQ=255)
gCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTa > 2:3142472/1‑93 (MQ=255)
cTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGCCATGGCGTAACTGGCGCAGCGTGGTGGAGTaa > 1:3297953/1‑93 (MQ=255)
tCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTaaa < 2:3002400/93‑1 (MQ=255)
cAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAAt > 2:5930006/1‑93 (MQ=255)
aaaaaCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATg > 2:2088126/1‑93 (MQ=255)
aaaaCATTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGc < 2:3198837/93‑1 (MQ=255)
aaaaCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGc < 1:1813418/93‑1 (MQ=255)
aaaaCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGc > 2:4152248/1‑93 (MQ=255)
aaaCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGcc < 1:315480/93‑1 (MQ=255)
aCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCgg < 1:1650649/93‑1 (MQ=255)
aCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCgg > 1:4291350/1‑93 (MQ=255)
aCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCgg < 1:3657077/93‑1 (MQ=255)
aCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCgg < 1:3574132/93‑1 (MQ=255)
aCAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCgg < 1:606869/93‑1 (MQ=255)
cAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCggg > 2:6344799/1‑92 (MQ=255)
cAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGt < 2:1695575/93‑1 (MQ=255)
aGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTg < 1:142602/93‑1 (MQ=255)
aGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTg > 1:4146808/1‑93 (MQ=255)
aGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTg < 2:4337650/93‑1 (MQ=255)
aGTTTTCGTGCTGCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGAGGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTg < 2:2059042/93‑1 (MQ=255)
tttttAGTGCTTCCGGAATACTACACAGCGGGTGTTGCATGTGTCGACGGGCATGGCGTAACTGGCGCAGCGTGTTGGAGTAAATGCCGGTGa < 2:2931343/92‑1 (MQ=255)
ttCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCg > 1:2336702/1‑93 (MQ=255)
ttCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCg > 1:6097488/1‑93 (MQ=255)
tCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGc < 1:4117440/93‑1 (MQ=255)
cGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCa < 2:2857516/93‑1 (MQ=255)
gTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCAc < 1:5998707/93‑1 (MQ=255)
gTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCAc > 2:4903242/1‑93 (MQ=255)
gTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCAc > 2:1290142/1‑93 (MQ=255)
cTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACtgt < 2:5693445/93‑1 (MQ=255)
ttCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACtgtt > 2:2795492/1‑93 (MQ=255)
ttCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACtgtt < 2:733206/93‑1 (MQ=255)
ttCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACtgtt < 1:348671/93‑1 (MQ=255)
ttCCGGAATATTACACAGCGGGTGTTGCAGGTGGAGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACtgtt > 2:4297822/1‑93 (MQ=255)
tCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACtgttg > 1:2769067/1‑93 (MQ=255)
ccGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACtgttgt < 2:1240841/93‑1 (MQ=255)
cGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTtgtg < 1:705150/93‑1 (MQ=255)
ggAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGc > 1:5225141/1‑93 (MQ=255)
ggAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGc > 1:1358900/1‑93 (MQ=255)
ggAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGc < 2:1953438/93‑1 (MQ=255)
gAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCa > 1:2496995/1‑93 (MQ=255)
gAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCa < 1:649046/93‑1 (MQ=255)
aaTATTACACAGCGGTTGTTGCAGGTGTCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCAc < 2:3650178/93‑1 (MQ=255)
atatTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCAcc > 2:84523/1‑93 (MQ=255)
tatTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCa > 1:6321639/1‑93 (MQ=255)
acaGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGgtgt > 1:3733353/1‑93 (MQ=255)
acaGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGgtgt > 2:5679145/1‑93 (MQ=255)
acaGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGgtgt < 2:3411754/93‑1 (MQ=255)
caGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTa < 2:3687887/93‑1 (MQ=255)
caGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTa > 1:3229685/1‑93 (MQ=255)
caGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTa < 1:5747305/93‑1 (MQ=255)
aGCGGTTGGTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAg > 2:6305087/1‑93 (MQ=255)
gCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGa > 2:457152/1‑93 (MQ=255)
ggTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAAc < 2:455319/93‑1 (MQ=255)
ggTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAAc > 2:2632465/1‑93 (MQ=255)
ggTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAAc < 1:1517528/93‑1 (MQ=255)
gttgttGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACa > 1:782664/1‑93 (MQ=255)
ttgttgCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACAt < 1:26790/93‑1 (MQ=255)
gttgCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATAc < 2:2387562/93‑1 (MQ=255)
ttgCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACg > 1:6160415/1‑93 (MQ=255)
ttgCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACg < 2:333624/93‑1 (MQ=255)
|
AATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACGCAA > NC_000913/187344‑187522
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCAATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACGCAAGATG > NC_000913/187341‑187526
|
GGCAATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGT < SRR4302537.2593499/94‑1 (MQ=60)
GGCAATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGT > SRR4302537.4560645/1‑94 (MQ=60)
GCAATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTG < SRR4302537.3282271/94‑1 (MQ=60)
GCAATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTG < SRR4302537.2661559/94‑1 (MQ=60)
ATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCG < SRR4302537.2653319/94‑1 (MQ=60)
ATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCG > SRR4302537.1648933/1‑94 (MQ=60)
TAGCCCGCTCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGA > SRR4302537.1037365/1‑94 (MQ=60)
AGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGAC < SRR4302537.3091154/94‑1 (MQ=60)
AGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGAC > SRR4302537.3611436/1‑94 (MQ=60)
CCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGG < SRR4302537.3874780/94‑1 (MQ=60)
CGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGC > SRR4302537.1933733/1‑94 (MQ=60)
GCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCA < SRR4302537.1032038/94‑1 (MQ=60)
GCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCA > SRR4302537.4161046/1‑94 (MQ=60)
CGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCAT > SRR4302537.762091/1‑94 (MQ=60)
GCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATG > SRR4302537.6183677/1‑94 (MQ=60)
GCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATG > SRR4302537.5644054/1‑94 (MQ=60)
GCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATG > SRR4302537.5217151/1‑94 (MQ=60)
CCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGG < SRR4302537.4821797/94‑1 (MQ=60)
CCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGG > SRR4302537.1165270/1‑94 (MQ=60)
CCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGG < SRR4302537.5789952/94‑1 (MQ=60)
CCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGG > SRR4302537.5796831/1‑94 (MQ=60)
CGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGC > SRR4302537.1202426/1‑94 (MQ=60)
CCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAA < SRR4302537.1290619/94‑1 (MQ=60)
CGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCTGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAAC < SRR4302537.1147777/94‑1 (MQ=60)
CGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAAC > SRR4302537.4512807/1‑94 (MQ=60)
GCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACT > SRR4302537.5951178/1‑94 (MQ=60)
CTCCGGGGTGACGTAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTG < SRR4302537.3712721/94‑1 (MQ=60)
CTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTG < SRR4302537.1033402/94‑1 (MQ=60)
CTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTG > SRR4302537.196676/1‑94 (MQ=60)
CTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTG > SRR4302537.2698450/1‑94 (MQ=60)
CCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGC < SRR4302537.4633902/94‑1 (MQ=60)
CGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGAGCATGGCGTAACTGGCG > SRR4302537.1344208/1‑94 (MQ=60)
GGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTATACAGCGGTTTTTGCAGGAGTGGAGGAGCATGGCGTAACTGGCGCAG > SRR4302537.1736946/1‑94 (MQ=60)
GGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAG < SRR4302537.3993116/94‑1 (MQ=60)
GGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAG > SRR4302537.4788411/1‑94 (MQ=60)
CGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGG > SRR4302537.1964673/1‑94 (MQ=60)
CGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGG > SRR4302537.2891473/1‑94 (MQ=60)
GCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGT > SRR4302537.6355702/1‑94 (MQ=60)
GCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGG > SRR4302537.4397650/1‑94 (MQ=60)
CAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTG < SRR4302537.4721984/94‑1 (MQ=60)
CAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTG < SRR4302537.915796/94‑1 (MQ=60)
CAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTG > SRR4302537.4893191/1‑94 (MQ=60)
CAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTG > SRR4302537.4929900/1‑94 (MQ=60)
AGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGG > SRR4302537.3215460/1‑94 (MQ=60)
AGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGG > SRR4302537.232388/1‑94 (MQ=60)
GAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGA > SRR4302537.3913002/1‑94 (MQ=60)
AATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAG > SRR4302537.5153372/1‑94 (MQ=60)
AATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAG > SRR4302537.5114645/1‑94 (MQ=60)
ATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGTGTGGTGGAGT > SRR4302537.3391309/1‑94 (MQ=60)
ATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGA > SRR4302537.1153510/1‑94 (MQ=60)
TGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTA < SRR4302537.2178974/94‑1 (MQ=60)
GCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAA > SRR4302537.4172059/1‑94 (MQ=60)
GCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAA < SRR4302537.2487343/94‑1 (MQ=60)
GCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAA > SRR4302537.704000/1‑94 (MQ=60)
GCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGCCATGGCGTAACTGGCGCAGCGTGGTGGAGTAA > SRR4302537.3321267/1‑94 (MQ=60)
CTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAA > SRR4302537.4181645/1‑94 (MQ=60)
TCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGGGCAGCGTGGTGGAGTAAAT < SRR4302537.1848369/94‑1 (MQ=60)
TCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAAT < SRR4302537.618550/94‑1 (MQ=60)
CAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATG > SRR4302537.1409369/1‑94 (MQ=60)
AAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGC > SRR4302537.3870327/1‑94 (MQ=60)
AAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGC > SRR4302537.5245505/1‑94 (MQ=60)
AAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCC < SRR4302537.1655835/94‑1 (MQ=60)
AAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCC < SRR4302537.1826060/94‑1 (MQ=60)
AAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCG < SRR4302537.317670/94‑1 (MQ=60)
AACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGG > SRR4302537.814600/1‑94 (MQ=60)
AACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGG > SRR4302537.4321172/1‑94 (MQ=60)
ACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGT < SRR4302537.1662228/94‑1 (MQ=60)
ACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGT < SRR4302537.611017/94‑1 (MQ=60)
ACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGT > SRR4302537.2324175/1‑94 (MQ=60)
ACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGT > SRR4302537.750132/1‑94 (MQ=60)
ACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGT < SRR4302537.3682815/94‑1 (MQ=60)
ACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGT < SRR4302537.3599342/94‑1 (MQ=60)
CAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTG > SRR4302537.4175744/1‑94 (MQ=60)
CAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTG > SRR4302537.594782/1‑94 (MQ=60)
AGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGA < SRR4302537.4496977/94‑1 (MQ=60)
AGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGA < SRR4302537.143615/94‑1 (MQ=60)
GTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGAT > SRR4302537.2323268/1‑94 (MQ=60)
TTTCGTGCTTCCGGAATATTACACATGGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCG < SRR4302537.3048364/94‑1 (MQ=60)
TTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCG > SRR4302537.2353179/1‑94 (MQ=60)
TTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCG < SRR4302537.4794890/94‑1 (MQ=60)
TTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCG > SRR4302537.6139388/1‑94 (MQ=60)
TTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGCGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGC < SRR4302537.2799444/94‑1 (MQ=60)
TCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCA < SRR4302537.4146195/94‑1 (MQ=60)
CGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCAC > SRR4302537.4615235/1‑94 (MQ=60)
GTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACT < SRR4302537.3315390/94‑1 (MQ=60)
GTGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACT < SRR4302537.6039914/94‑1 (MQ=60)
TGCTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTG > SRR4302537.4633037/1‑94 (MQ=60)
CTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATTCCGGTGATCGCACTGTT < SRR4302537.3438216/94‑1 (MQ=60)
CTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTT < SRR4302537.4395147/94‑1 (MQ=60)
CTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTT > SRR4302537.1574050/1‑94 (MQ=60)
CTTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTT < SRR4302537.2461233/94‑1 (MQ=60)
TTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTG > SRR4302537.5003493/1‑94 (MQ=60)
TTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTG < SRR4302537.351092/94‑1 (MQ=60)
TTCCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTG > SRR4302537.2788415/1‑94 (MQ=60)
CCGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTG < SRR4302537.6055209/94‑1 (MQ=60)
CGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGC > SRR4302537.5261073/1‑94 (MQ=60)
CGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGC > SRR4302537.1368361/1‑94 (MQ=60)
CGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGC < SRR4302537.709974/94‑1 (MQ=60)
CGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGC > SRR4302537.4111579/1‑94 (MQ=60)
CGGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGC > SRR4302537.6496489/1‑94 (MQ=60)
GGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCA > SRR4302537.3817905/1‑94 (MQ=60)
GGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCA > SRR4302537.2514569/1‑94 (MQ=60)
GGAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCA > SRR4302537.4896684/1‑94 (MQ=60)
GAATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCAC < SRR4302537.653471/94‑1 (MQ=60)
ATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCA > SRR4302537.6364892/1‑94 (MQ=60)
ATATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCA > SRR4302537.5226421/1‑94 (MQ=60)
ATTACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATG < SRR4302537.5652736/94‑1 (MQ=60)
TACACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGT > SRR4302537.6137213/1‑94 (MQ=60)
CACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGT > SRR4302537.3759574/1‑94 (MQ=60)
ACAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTA > SRR4302537.3252446/1‑94 (MQ=60)
CAGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAG < SRR4302537.5786661/94‑1 (MQ=60)
AGCGGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGA < SRR4302537.1613664/94‑1 (MQ=60)
GGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACA < SRR4302537.1528133/94‑1 (MQ=60)
GGTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACA > SRR4302537.788038/1‑94 (MQ=60)
GTTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACAT < SRR4302537.5540163/94‑1 (MQ=60)
TTGTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATA < SRR4302537.27002/94‑1 (MQ=60)
TTGTTGCAGGTGGCGACGGGCATGGCGCAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTTCACCATGGTGTAGCACATA > SRR4302537.3530138/1‑94 (MQ=60)
GTTGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACG > SRR4302537.6202811/1‑94 (MQ=60)
TGCAGGTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACGCA < SRR4302537.1476592/94‑1 (MQ=60)
GTGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACGCAAGATG > SRR4302537.3218060/1‑94 (MQ=60)
|
GGCAATAGCCCGCGCCGCACCGCTCCGGGGTGACGCAGAATGCTCAAAAACAGTTTTCGTGCTTCCGGAATATTACACAGCGGTTGTTGCAGATGGCGACGGGCATGGCGTAACTGGCGCAGCGTGGTGGAGTAAATGCCGGTGATCGCACTGTTGTGCACCATGGTGTAGAACATACGCAAGATG > NC_000913/187341‑187526
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
