Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	200,335	A→G	Q803R (CAG→CGG)	yaeT →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	200,335	0	A	G	100.0%	876.5 / NA	252	Q803R (CAG→CGG)	yaeT	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (140/112); total (140/112)

Only 100 of 259 total aligned reads displayed.

CATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG  >  NC_000913/200245‑200424

cATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGt                                                                                         >  2:1937156/1‑93 (MQ=255)

cATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGt                                                                                         >  2:2084118/1‑93 (MQ=255)

cATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGt                                                                                         >  2:2896465/1‑93 (MQ=255)

 aTTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGtt                                                                                        >  1:1035534/1‑93 (MQ=255)

 aTTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGtt                                                                                        <  1:3955687/93‑1 (MQ=255)

 aTTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGtt                                                                                        >  2:572947/1‑93 (MQ=255)

 aTTACAATGGAGGACCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGtt                                                                                        <  1:3923946/93‑1 (MQ=255)

  ttACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGttt                                                                                       >  1:4716207/1‑93 (MQ=255)

  ttACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGttt                                                                                       >  2:1712839/1‑93 (MQ=255)

  ttACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGttt                                                                                       >  2:2716328/1‑93 (MQ=255)

     cAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAAc                                                                                    >  2:5120107/1‑93 (MQ=255)

      aaTGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACa                                                                                   >  1:906343/1‑93 (MQ=255)

        tGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATc                                                                                 >  2:6163756/1‑93 (MQ=255)

          gATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCgg                                                                               <  1:5503046/93‑1 (MQ=255)

             gTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTaa                                                                            >  1:5162982/1‑93 (MQ=255)

              tCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTaaa                                                                           >  1:2252351/1‑93 (MQ=255)

                cccATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAAc                                                                         <  2:459052/93‑1 (MQ=255)

                cccATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAAc                                                                         >  2:3564944/1‑93 (MQ=255)

                 ccATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAAcc                                                                        >  2:3761250/1‑93 (MQ=255)

                  cATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCt                                                                       <  1:4430679/93‑1 (MQ=255)

                   aTTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTg                                                                      <  2:4679457/93‑1 (MQ=255)

                   aTTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTg                                                                      >  1:500460/1‑93 (MQ=255)

                    ttGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTgg                                                                     >  1:6406548/1‑93 (MQ=255)

                    ttGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTgg                                                                     >  1:6118685/1‑93 (MQ=255)

                       gggCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTaa                                                                  >  2:5634073/1‑93 (MQ=255)

                       gggCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTaa                                                                  <  2:6028658/93‑1 (MQ=255)

                       gggCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTaa                                                                  <  2:752749/93‑1 (MQ=255)

                           cGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAgtgt                                                              >  2:5512064/1‑93 (MQ=255)

                           cGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAgtgt                                                              <  1:4270231/93‑1 (MQ=255)

                            gTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGtt                                                             >  1:107308/1‑93 (MQ=255)

                            gTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGtt                                                             >  1:696580/1‑93 (MQ=255)

                             ttGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTtc                                                            <  1:627235/93‑1 (MQ=255)

                             ttGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTtc                                                            <  2:2536871/93‑1 (MQ=255)

                                 tgtTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCca                                                        >  2:4476082/1‑93 (MQ=255)

                                 tgtTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCca                                                        <  1:3755101/93‑1 (MQ=255)

                                  gtTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCcac                                                       <  2:326032/93‑1 (MQ=255)

                                     ctcCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACaaa                                                    <  1:2107698/93‑1 (MQ=255)

                                      tcCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAg                                                   <  1:411891/93‑1 (MQ=255)

                                      tcCTACGCCCAGCCGGTCAAAAAGTACGATGGAGACAAGTCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAg                                                   >  1:98465/1‑93 (MQ=255)

                                        cTACGCCCAGCGGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGa                                                 <  1:4201485/93‑1 (MQ=255)

                                         tACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGaa                                                <  1:2724296/93‑1 (MQ=255)

                                         tACGCCCAGCCGTGCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGaa                                                <  1:5442493/93‑1 (MQ=255)

                                         caCGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGaa                                                <  1:446268/92‑1 (MQ=255)

                                          aCGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAAt                                               >  2:4242972/1‑93 (MQ=255)

                                          aCGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAAt                                               <  2:2037196/93‑1 (MQ=255)

                                           cGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATg                                              >  1:5642258/1‑93 (MQ=255)

                                             cccAGCTGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgta                                            <  2:5949412/93‑1 (MQ=255)

                                               cAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagt                                          >  1:3848942/1‑93 (MQ=255)

                                               cAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagt                                          >  2:1355931/1‑93 (MQ=255)

                                                aGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagtg                                         <  2:5134564/93‑1 (MQ=255)

                                                aGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagtg                                         >  2:4741077/1‑93 (MQ=255)

                                                 gCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagtgg                                        <  2:6051880/93‑1 (MQ=255)

                                                    gTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagtggtag                                     <  2:3944233/93‑1 (MQ=255)

                                                    gTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagtggtag                                     <  2:1196729/93‑1 (MQ=255)

                                                    gTTCAAAAAGCACGATGGAGACAAGGAAGAACAGTTCAGGTTTAACATCGGTAAAACCTGGCAAGAGTTCTCCACAAAGGAATgtagtggtag                                     >  2:6434895/1‑93 (MQ=255)

                                                     ttCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagtggtagt                                    >  1:1737278/1‑93 (MQ=255)

                                                     ttCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATgtagtggtagt                                    >  2:5790444/1‑93 (MQ=255)

                                                       cAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAgtgt                                  <  2:4171736/93‑1 (MQ=255)

                                                       aaaaaaGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAgtgt                                  <  2:4405317/92‑1 (MQ=255)

                                                        aaaaaGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTa                                 >  1:6433790/1‑93 (MQ=255)

                                                        aaaaaGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTa                                 >  1:1316269/1‑93 (MQ=255)

                                                        aaaaaGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTa                                 >  2:90800/1‑93 (MQ=255)

                                                          aaaGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGc                               >  1:1197090/1‑93 (MQ=255)

                                                          aaaGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGc                               <  2:2665294/93‑1 (MQ=255)

                                                            aGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGa                             >  1:93100/1‑93 (MQ=255)

                                                             gTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGAt                            >  1:5357421/1‑93 (MQ=255)

                                                              tACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATg                           <  1:253109/93‑1 (MQ=255)

                                                               aCGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGa                          >  1:5869988/1‑93 (MQ=255)

                                                               aCGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGa                          <  1:2879899/93‑1 (MQ=255)

                                                                cGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGAc                         >  2:3349915/1‑93 (MQ=255)

                                                                  aTGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACtt                       >  2:2309146/1‑93 (MQ=255)

                                                                  aTGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACtt                       >  2:763487/1‑93 (MQ=255)

                                                                   tGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACttt                      >  1:1383721/1‑93 (MQ=255)

                                                                    ggAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTa                     >  2:1136057/1‑93 (MQ=255)

                                                                     gagaCAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAg                    <  1:3004832/93‑1 (MQ=255)

                                                                      agaCAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAgg                   <  1:3503054/93‑1 (MQ=255)

                                                                       gaCAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGc                  <  2:5398571/93‑1 (MQ=255)

                                                                        aCAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCg                 >  1:1507511/1‑93 (MQ=255)

                                                                         cAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGa                <  2:1552798/93‑1 (MQ=255)

                                                                           aGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATc              >  1:369595/1‑93 (MQ=255)

                                                                             gCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCaa            <  1:6167775/93‑1 (MQ=255)

                                                                             gCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCaa            <  1:341227/93‑1 (MQ=255)

                                                                                gAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAatat         >  1:4763814/1‑93 (MQ=255)

                                                                                gAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAatat         >  1:4858772/1‑93 (MQ=255)

                                                                                gAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAatat         >  1:4945468/1‑93 (MQ=255)

                                                                                 aaCAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAAtata        <  2:195309/93‑1 (MQ=255)

                                                                                  aCAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATaa       <  1:2307136/93‑1 (MQ=255)

                                                                                  aCAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATaa       >  1:4017759/1‑93 (MQ=255)

                                                                                  aCAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATaa       <  2:4883554/93‑1 (MQ=255)

                                                                                  aCAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATaa       >  2:1818137/1‑93 (MQ=255)

                                                                                    aGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGa     >  2:4046680/1‑93 (MQ=255)

                                                                                    aGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGa     <  1:5912219/93‑1 (MQ=255)

                                                                                    aGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGa     <  1:1911288/93‑1 (MQ=255)

                                                                                     gTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAt    >  1:1599044/1‑93 (MQ=255)

                                                                                     gTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAt    <  1:837834/93‑1 (MQ=255)

                                                                                     gTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAt    >  1:5427547/1‑93 (MQ=255)

                                                                                      ttCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATc   <  1:5570562/93‑1 (MQ=255)

                                                                                      ttCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATc   <  1:3294213/93‑1 (MQ=255)

                                                                                      ttCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATc   <  1:113766/93‑1 (MQ=255)

                                                                                       tCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCAACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATCTAAGATCg  >  2:2492680/1‑93 (MQ=255)

CATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG  >  NC_000913/200245‑200424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCCGG  >  NC_000913/200244‑200428

GCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGT                                                                                             >  SRR4302537.4735827/1‑94 (MQ=60)

 CATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTT                                                                                            >  SRR4302537.1042665/1‑94 (MQ=60)

 CATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGCACGAACAGTTCCGGTT                                                                                            >  SRR4302537.445163/1‑94 (MQ=60)

  ATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTT                                                                                           >  SRR4302537.4748822/1‑94 (MQ=60)

  ATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTT                                                                                           <  SRR4302537.3983363/94‑1 (MQ=60)

  ATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTT                                                                                           <  SRR4302537.3951365/94‑1 (MQ=60)

  ATTACAATGGAGGACCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTT                                                                                           <  SRR4302537.3951364/94‑1 (MQ=60)

   TTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTA                                                                                          >  SRR4302537.5478580/1‑94 (MQ=60)

   TTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTA                                                                                          <  SRR4302537.5785186/94‑1 (MQ=60)

     ACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAAC                                                                                        >  SRR4302537.3596544/1‑94 (MQ=60)

     ACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAAC                                                                                        <  SRR4302537.3723131/94‑1 (MQ=60)

      CAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACA                                                                                       >  SRR4302537.4163722/1‑94 (MQ=60)

      CAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACA                                                                                       >  SRR4302537.4236270/1‑94 (MQ=60)

      CAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACA                                                                                       <  SRR4302537.861369/94‑1 (MQ=60)

      CAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACA                                                                                       >  SRR4302537.912604/1‑94 (MQ=60)

       ATTGGATGTCCCTCTTGGGGCCGTTGGTGTTCTCCTACCCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACCGTTCCGGTTTAACAT                                                                                      <  SRR4302537.2594411/94‑1 (MQ=60)

       AATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACAT                                                                                      <  SRR4302537.6344004/94‑1 (MQ=60)

       AATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACAT                                                                                      >  SRR4302537.834587/1‑94 (MQ=60)

         TGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCG                                                                                    <  SRR4302537.6491185/94‑1 (MQ=60)

          GGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGG                                                                                   >  SRR4302537.4268860/1‑94 (MQ=60)

           GATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGT                                                                                  <  SRR4302537.5540623/94‑1 (MQ=60)

           GATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGT                                                                                  <  SRR4302537.701445/94‑1 (MQ=60)

            ATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTA                                                                                 >  SRR4302537.1158167/1‑94 (MQ=60)

             TGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAA                                                                                >  SRR4302537.5198566/1‑94 (MQ=60)

              GTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAA                                                                               >  SRR4302537.2268251/1‑94 (MQ=60)

                CCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAAC                                                                             >  SRR4302537.3780667/1‑94 (MQ=60)

                CCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAAC                                                                             <  SRR4302537.6185955/94‑1 (MQ=60)

                 CCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACC                                                                            >  SRR4302537.5945847/1‑94 (MQ=60)

                  CCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCT                                                                           >  SRR4302537.5096987/1‑94 (MQ=60)

                   CATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTG                                                                          <  SRR4302537.4461277/94‑1 (MQ=60)

                   CATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTG                                                                          >  SRR4302537.503901/1‑94 (MQ=60)

                   CATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTG                                                                          >  SRR4302537.3469479/1‑94 (MQ=60)

                    ATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGG                                                                         >  SRR4302537.6160739/1‑94 (MQ=60)

                    ATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGG                                                                         >  SRR4302537.6341619/1‑94 (MQ=60)

                    ATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGG                                                                         >  SRR4302537.6450151/1‑94 (MQ=60)

                    ATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGG                                                                         >  SRR4302537.6450152/1‑94 (MQ=60)

                    ATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGAAGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGG                                                                         <  SRR4302537.3143042/94‑1 (MQ=60)

                       GGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAA                                                                      >  SRR4302537.3849930/1‑94 (MQ=60)

                          GCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTG                                                                   <  SRR4302537.1046662/94‑1 (MQ=60)

                          GCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTG                                                                   <  SRR4302537.5446269/94‑1 (MQ=60)

                           CCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGT                                                                  <  SRR4302537.2983873/94‑1 (MQ=60)

                            CGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTT                                                                 >  SRR4302537.108088/1‑94 (MQ=60)

                            CGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTT                                                                 >  SRR4302537.701354/1‑94 (MQ=60)

                            CGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTT                                                                 <  SRR4302537.4299898/94‑1 (MQ=60)

                             GTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTC                                                                <  SRR4302537.4832321/94‑1 (MQ=60)

                              TTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCT                                                               <  SRR4302537.631508/94‑1 (MQ=60)

                                  TGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCAC                                                           <  SRR4302537.3781469/94‑1 (MQ=60)

                                    TTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAA                                                         <  SRR4302537.5548265/94‑1 (MQ=60)

                                    TTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAA                                                         >  SRR4302537.2586206/1‑94 (MQ=60)

                                      CTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAG                                                       >  SRR4302537.6293793/1‑94 (MQ=60)

                                      CTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAG                                                       <  SRR4302537.2122555/94‑1 (MQ=60)

                                      CTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAG                                                       >  SRR4302537.3983117/1‑94 (MQ=60)

                                      CTCCTACGCCCAGCCGGTCAAAAAGTACGATGGAGACAAGTCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAG                                                       >  SRR4302537.99177/1‑94 (MQ=60)

                                       TCCTACTCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGG                                                      <  SRR4302537.1570229/94‑1 (MQ=60)

                                       TCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGG                                                      <  SRR4302537.414742/94‑1 (MQ=60)

                                        CCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGA                                                     >  SRR4302537.1826541/1‑94 (MQ=60)

                                         CTACGCCCAGCGGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAA                                                    <  SRR4302537.4230816/94‑1 (MQ=60)

                                         CTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAA                                                    >  SRR4302537.970511/1‑94 (MQ=60)

                                          TACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAAT                                                   <  SRR4302537.2743323/94‑1 (MQ=60)

                                          TACGCCCAGCCGTGCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAAT                                                   <  SRR4302537.5479620/94‑1 (MQ=60)

                                          CACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAAT                                                   <  SRR4302537.449364/94‑1 (MQ=60)

                                           ACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATG                                                  >  SRR4302537.2322533/1‑94 (MQ=60)

                                           ACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATG                                                  >  SRR4302537.5680869/1‑94 (MQ=60)

                                             GCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGTAATGTT                                                >  SRR4302537.2760739/1‑94 (MQ=60)

                                             GCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTA                                                >  SRR4302537.922480/1‑94 (MQ=60)

                                               CCAGCCGTTCAAAAAGTACGATGGAGACAAGGCTCAACAGTTCCGGTTTAACATCGGTAAAGCCTGGTAAGTGTTCTCCACAAAGGAATGTAGT                                              <  SRR4302537.5483262/94‑1 (MQ=60)

                                               CCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGT                                              >  SRR4302537.3875896/1‑94 (MQ=60)

                                               CCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGT                                              >  SRR4302537.5621251/1‑94 (MQ=60)

                                                CAGCCGTTCAAAAAGTGCGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTG                                             <  SRR4302537.931624/94‑1 (MQ=60)

                                                 AGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGG                                            >  SRR4302537.4899688/1‑94 (MQ=60)

                                                 AGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGG                                            >  SRR4302537.4782570/1‑94 (MQ=60)

                                                 AGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGG                                            >  SRR4302537.2117133/1‑94 (MQ=60)

                                                 AGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGG                                            <  SRR4302537.4054999/94‑1 (MQ=60)

                                                   CCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTA                                          <  SRR4302537.1319118/94‑1 (MQ=60)

                                                   CCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTA                                          <  SRR4302537.2367499/94‑1 (MQ=60)

                                                    CGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAG                                         >  SRR4302537.557964/1‑94 (MQ=60)

                                                     GTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGT                                        >  SRR4302537.1749396/1‑94 (MQ=60)

                                                        CAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTA                                     >  SRR4302537.1325441/1‑94 (MQ=60)

                                                        CAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTA                                     >  SRR4302537.6477482/1‑94 (MQ=60)

                                                        CAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAAAATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTA                                     >  SRR4302537.4666389/1‑94 (MQ=60)

                                                          AAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGC                                   <  SRR4302537.3913949/94‑1 (MQ=60)

                                                          AAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGC                                   <  SRR4302537.4969771/94‑1 (MQ=60)

                                                          AAAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGC                                   >  SRR4302537.1205405/1‑94 (MQ=60)

                                                           AAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCG                                  <  SRR4302537.1582631/94‑1 (MQ=60)

                                                           AAAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCA                                  >  SRR4302537.1757189/1‑94 (MQ=60)

                                                            AAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGCATGTAGTGGTAGTGTAGCGA                                 >  SRR4302537.590247/1‑94 (MQ=60)

                                                            AAGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGA                                 >  SRR4302537.93776/1‑94 (MQ=60)

                                                             AGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGAT                                <  SRR4302537.5261384/94‑1 (MQ=60)

                                                             AGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGAT                                >  SRR4302537.5394112/1‑94 (MQ=60)

                                                             AGTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGAT                                <  SRR4302537.4034407/94‑1 (MQ=60)

                                                              GTACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATG                               <  SRR4302537.3939707/94‑1 (MQ=60)

                                                               TACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGA                              <  SRR4302537.254906/94‑1 (MQ=60)

                                                               TACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGA                              >  SRR4302537.5910254/1‑94 (MQ=60)

                                                               TACGATGGAGACAAGGCAGAACAGTTCCGGGTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAGGGGATGGAGTGGGAGTGTAGCGATGG                              >  SRR4302537.1669204/1‑94 (MQ=60)

                                                                ACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGAC                             >  SRR4302537.6157382/1‑94 (MQ=60)

                                                                ACGATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGAC                             <  SRR4302537.2900108/94‑1 (MQ=60)

                                                                  GATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTT                           >  SRR4302537.4829448/1‑94 (MQ=60)

                                                                   ATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTT                          >  SRR4302537.6156478/1‑94 (MQ=60)

                                                                   ATGGAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTT                          >  SRR4302537.1393375/1‑94 (MQ=60)

                                                                      GAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGG                       <  SRR4302537.3025760/94‑1 (MQ=60)

                                                                      GAGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGG                       <  SRR4302537.2900112/94‑1 (MQ=60)

                                                                       AGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGC                      <  SRR4302537.4062659/94‑1 (MQ=60)

                                                                       AGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGC                      <  SRR4302537.2145553/94‑1 (MQ=60)

                                                                       AGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGC                      >  SRR4302537.4470051/1‑94 (MQ=60)

                                                                       AGACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGC                      <  SRR4302537.3527837/94‑1 (MQ=60)

                                                                        GACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCG                     >  SRR4302537.1518029/1‑94 (MQ=60)

                                                                         ACAAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGA                    >  SRR4302537.1346880/1‑94 (MQ=60)

                                                                           AAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATC                  <  SRR4302537.700475/94‑1 (MQ=60)

                                                                           AAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATC                  >  SRR4302537.372157/1‑94 (MQ=60)

                                                                           AAGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATC                  >  SRR4302537.2232209/1‑94 (MQ=60)

                                                                            AGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCA                 <  SRR4302537.6188178/94‑1 (MQ=60)

                                                                            AGGCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCA                 >  SRR4302537.1506591/1‑94 (MQ=60)

                                                                              GCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAAT               <  SRR4302537.343591/94‑1 (MQ=60)

                                                                              GCAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAAT               <  SRR4302537.6210245/94‑1 (MQ=60)

                                                                               GAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATA              <  SRR4302537.1321014/94‑1 (MQ=60)

                                                                               CAGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATA              >  SRR4302537.4455885/1‑94 (MQ=60)

                                                                                AGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTGGTGGAAGTGTAGCGATGACTTTAGGGGATCACTAT             >  SRR4302537.5239729/1‑94 (MQ=60)

                                                                                AGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATAT             <  SRR4302537.343483/94‑1 (MQ=60)

                                                                                AGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATAT             >  SRR4302537.1129191/1‑94 (MQ=60)

                                                                                AGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATAT             >  SRR4302537.4892296/1‑94 (MQ=60)

                                                                                AGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATAT             >  SRR4302537.4979570/1‑94 (MQ=60)

                                                                                AGAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATAT             >  SRR4302537.4796714/1‑94 (MQ=60)

                                                                                 GAACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATA            >  SRR4302537.5197118/1‑94 (MQ=60)

                                                                                  AACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAA           >  SRR4302537.4045887/1‑94 (MQ=60)

                                                                                  AACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAA           >  SRR4302537.1100468/1‑94 (MQ=60)

                                                                                   ACAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAG          <  SRR4302537.2323424/94‑1 (MQ=60)

                                                                                    CAGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGA         >  SRR4302537.3183815/1‑94 (MQ=60)

                                                                                     AGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAT        <  SRR4302537.1924557/94‑1 (MQ=60)

                                                                                     AGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAT        >  SRR4302537.1610218/1‑94 (MQ=60)

                                                                                     AGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAT        >  SRR4302537.5464553/1‑94 (MQ=60)

                                                                                     AGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAT        <  SRR4302537.4995162/94‑1 (MQ=60)

                                                                                     AGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAT        <  SRR4302537.1504607/94‑1 (MQ=60)

                                                                                     AGTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGAT        <  SRR4302537.5952785/94‑1 (MQ=60)

                                                                                      GTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATC       <  SRR4302537.3522751/94‑1 (MQ=60)

                                                                                      GTTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATC       <  SRR4302537.843574/94‑1 (MQ=60)

                                                                                       TTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG      <  SRR4302537.2285864/94‑1 (MQ=60)

                                                                                       TTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG      <  SRR4302537.114594/94‑1 (MQ=60)

                                                                                       TTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG      <  SRR4302537.5395291/94‑1 (MQ=60)

                                                                                       TTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG      <  SRR4302537.5469747/94‑1 (MQ=60)

                                                                                       TTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG      <  SRR4302537.3317498/94‑1 (MQ=60)

                                                                                       TTCCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCG      <  SRR4302537.5608637/94‑1 (MQ=60)

                                                                                         CCGGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCC    >  SRR4302537.3149362/1‑94 (MQ=60)

                                                                                           GGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCCGG  >  SRR4302537.4399962/1‑94 (MQ=60)

                                                                                           GGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCCGG  >  SRR4302537.4238406/1‑94 (MQ=60)

                                                                                           GGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCCGG  <  SRR4302537.2976999/94‑1 (MQ=60)

GCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCCGG  >  NC_000913/200244‑200428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`