Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 260,837 A→G A37A (GCA→GCG)  proA → gamma‑glutamylphosphate reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913260,8370AG100.0% 707.1 / NA 205A37A (GCA→GCG) proAgamma‑glutamylphosphate reductase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (108/97);  total (108/97)

Only 100 of 231 total aligned reads displayed.

CCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGC  >  NC_000913/260749‑260926
                                                                                        |                                                                                         
ccGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCaaa                                                                                       <  2:6305476/93‑1 (MQ=255)
 cgcgAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAg                                                                                      <  2:4160619/93‑1 (MQ=255)
  gcgAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGc                                                                                     <  1:4565538/93‑1 (MQ=255)
  gcgAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGc                                                                                     <  1:1905525/93‑1 (MQ=255)
   cgAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCg                                                                                    >  2:1751868/1‑93 (MQ=255)
   cgAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCg                                                                                    <  1:5233142/93‑1 (MQ=255)
    gAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGa                                                                                   <  1:2716087/93‑1 (MQ=255)
     aagcaagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGaa                                                                                  <  1:4185496/93‑1 (MQ=255)
     aagcaagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGaa                                                                                  <  1:242322/93‑1 (MQ=255)
      agcaagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGaaa                                                                                 >  2:5214045/1‑93 (MQ=255)
      agcaagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGaaa                                                                                 >  1:6347346/1‑93 (MQ=255)
      agcaagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGAGCAAAGCGcaa                                                                                 >  2:2556466/1‑93 (MQ=255)
       gcaagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAat                                                                                >  1:1527471/1‑93 (MQ=255)
        caagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAatc                                                                               <  2:450166/93‑1 (MQ=255)
         aagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAatca                                                                              <  2:4762033/93‑1 (MQ=255)
         aagcCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAatca                                                                              <  1:1325674/93‑1 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          >  1:5141155/1‑93 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          <  2:639868/93‑1 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          >  1:5713390/1‑93 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          >  2:1889897/1‑93 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          >  2:2127793/1‑93 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          >  2:2178939/1‑93 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          >  2:2189892/1‑93 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          <  2:2699916/93‑1 (MQ=255)
             cTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCt                                                                          >  2:3991028/1‑93 (MQ=255)
              tCGTATAGATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTc                                                                         >  2:6139547/1‑93 (MQ=255)
              tCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTc                                                                         >  2:1523488/1‑93 (MQ=255)
              tCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTc                                                                         <  2:5037282/93‑1 (MQ=255)
                gTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCaa                                                                       <  1:4454699/93‑1 (MQ=255)
                gTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCaa                                                                       >  2:2969210/1‑93 (MQ=255)
                gTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCaa                                                                       <  1:1920340/93‑1 (MQ=255)
                gTATAAATTAGCGAAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCaa                                                                       <  1:829358/93‑1 (MQ=255)
                 tataAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAAc                                                                      >  2:4408150/1‑93 (MQ=255)
                 tataAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAAc                                                                      <  1:1006030/93‑1 (MQ=255)
                  ataAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACg                                                                     <  1:5657430/93‑1 (MQ=255)
                   taAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGc                                                                    >  1:2894268/1‑93 (MQ=255)
                     aaTTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTa                                                                  >  1:3021116/1‑93 (MQ=255)
                      aTTAGCGCAACCCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTaa                                                                 <  1:351547/93‑1 (MQ=255)
                       ttAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAAc                                                                >  2:5686513/1‑93 (MQ=255)
                         aGCGCAACTCACAAGCCGCGAAAAAAATCGCGTGCTGAAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGc                                                              <  2:413569/93‑1 (MQ=255)
                          gcgcACCTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGcc                                                             <  2:2233645/93‑1 (MQ=255)
                            gcAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCa                                                           >  1:4478809/1‑93 (MQ=255)
                             cAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAg                                                          >  2:4578215/1‑93 (MQ=255)
                             cAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAg                                                          <  2:5018323/93‑1 (MQ=255)
                               aCTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGa                                                        <  2:199869/93‑1 (MQ=255)
                                ctctCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGAt                                                       <  2:328642/93‑1 (MQ=255)
                                 tctcCAGCCGCGAAAAAAATTGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAAAGCCCACGacg                                                      >  2:1296182/1‑91 (MQ=255)
                                 tctcCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATg                                                      <  2:5913387/93‑1 (MQ=255)
                                   cccAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGtt                                                    <  1:3862053/92‑1 (MQ=255)
                                   cccAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGtt                                                    <  1:2565569/92‑1 (MQ=255)
                                     cAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGc                                                  <  1:3732165/93‑1 (MQ=255)
                                     cAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGc                                                  <  2:4242396/93‑1 (MQ=255)
                                     cAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGc                                                  <  1:4925059/93‑1 (MQ=255)
                                     aaGCCGCGAAAAAAATCGCGCGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGTAATCATCCTCAACGCTAACGCCCCGGATGTTGc                                                  >  2:3159717/2‑93 (MQ=255)
                                        ccGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGa                                               <  1:703112/93‑1 (MQ=255)
                                        ccGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGa                                               <  1:2633195/93‑1 (MQ=255)
                                         cgcgAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAc                                              <  1:6447269/93‑1 (MQ=255)
                                          gcgAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAcg                                             >  2:893302/1‑93 (MQ=255)
                                           cgAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAcgc                                            <  2:336541/93‑1 (MQ=255)
                                            gAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAcgcg                                           <  2:1010726/93‑1 (MQ=255)
                                            gAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAcgcg                                           >  1:2287374/1‑93 (MQ=255)
                                             aaaaaaaTCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAcgcgc                                          >  2:4013060/1‑93 (MQ=255)
                                             aaaaaaaTCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGATGAcgcgc                                          <  1:5818394/93‑1 (MQ=255)
                                                aaaaTCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAg                                       >  2:610113/1‑93 (MQ=255)
                                                  aaTCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGcc                                     >  2:2383836/1‑93 (MQ=255)
                                                   aTCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCa                                    <  2:168392/93‑1 (MQ=255)
                                                     cgcgTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAAt                                  <  2:304095/93‑1 (MQ=255)
                                                      gcgTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATg                                 >  1:472704/1‑93 (MQ=255)
                                                      gcgTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATg                                 >  2:6354493/1‑93 (MQ=255)
                                                      gcgTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATg                                 <  1:5433012/93‑1 (MQ=255)
                                                          gCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCt                             >  1:558485/1‑93 (MQ=255)
                                                          gCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCt                             >  2:2330353/1‑93 (MQ=255)
                                                          gCTGAAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCt                             <  1:2180336/93‑1 (MQ=255)
                                                            tGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTa                           >  1:584084/1‑93 (MQ=255)
                                                             ggAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTag                          <  1:3985873/93‑1 (MQ=255)
                                                              aaaaaaaTCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagc                         <  2:5581088/92‑1 (MQ=255)
                                                               aaaaaaTCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagcg                        <  2:3862911/93‑1 (MQ=255)
                                                               aaaaaaTCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagcg                        >  1:5976614/1‑93 (MQ=255)
                                                                 aaaaTCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagcgaa                      >  1:4856685/1‑93 (MQ=255)
                                                                  aaaCCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagcgaag                     <  2:2455698/93‑1 (MQ=255)
                                                                   aaTCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagcgaagc                    <  1:4757959/93‑1 (MQ=255)
                                                                   aaTCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagcgaagc                    <  1:2157043/93‑1 (MQ=255)
                                                                   aaTCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTagcgaagc                    >  2:1137138/1‑93 (MQ=255)
                                                                      cGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGAt                 <  1:6200688/93‑1 (MQ=255)
                                                                        ccGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGc               >  1:2452342/1‑93 (MQ=255)
                                                                         cGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCt              <  2:919611/93‑1 (MQ=255)
                                                                         cGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCt              >  2:5315771/1‑93 (MQ=255)
                                                                          gATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCtt             <  1:1052497/93‑1 (MQ=255)
                                                                          gATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCtt             <  2:3711007/93‑1 (MQ=255)
                                                                           aTGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTg            >  2:962703/1‑93 (MQ=255)
                                                                            tGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGa           >  2:3648884/1‑93 (MQ=255)
                                                                            tGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGa           >  2:1211335/1‑93 (MQ=255)
                                                                             gAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGAc          >  2:273661/1‑93 (MQ=255)
                                                                              aaCTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATTTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGAcc         <  1:722136/93‑1 (MQ=255)
                                                                              aaCTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGAcc         >  1:3201120/1‑93 (MQ=255)
                                                                                 tGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTc      >  2:3795594/1‑93 (MQ=255)
                                                                                 tGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTc      <  1:944585/93‑1 (MQ=255)
                                                                                 tGGAAGCGAAAAGCGAAATCATCCTCACCGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTc      <  1:869792/93‑1 (MQ=255)
                                                                                  ggAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCt     >  2:6009031/1‑93 (MQ=255)
                                                                                   gAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTg    >  1:1472385/1‑93 (MQ=255)
                                                                                        |                                                                                         
CCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGC  >  NC_000913/260749‑260926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATTGCCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACT  >  NC_000913/260744‑260929
                                                                                             |                                                                                            
CATTGCCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCG                                                                                              <  SRR4302537.5503435/94‑1 (MQ=60)
CATTGCCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCG                                                                                              <  SRR4302537.6319217/94‑1 (MQ=60)
 ATTGCCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGC                                                                                             >  SRR4302537.1136940/1‑94 (MQ=60)
 ATTGCCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGC                                                                                             >  SRR4302537.4742349/1‑94 (MQ=60)
  TTGCCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCA                                                                                            <  SRR4302537.4410809/94‑1 (MQ=60)
     CCGCGAAGCAAGCCTCGTATAAATGAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAG                                                                                         <  SRR4302537.4550406/94‑1 (MQ=60)
       GCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCG                                                                                       <  SRR4302537.4597139/94‑1 (MQ=60)
       GCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCG                                                                                       <  SRR4302537.1918760/94‑1 (MQ=60)
        CGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGA                                                                                      <  SRR4302537.5269139/94‑1 (MQ=60)
         GAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAA                                                                                     >  SRR4302537.4789144/1‑94 (MQ=60)
         GAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAA                                                                                     >  SRR4302537.2058510/1‑94 (MQ=60)
         GAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAA                                                                                     <  SRR4302537.2735057/94‑1 (MQ=60)
          AAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAA                                                                                    <  SRR4302537.244039/94‑1 (MQ=60)
          AAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAA                                                                                    >  SRR4302537.6390698/1‑94 (MQ=60)
          AAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAA                                                                                    <  SRR4302537.4214717/94‑1 (MQ=60)
          AAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAA                                                                                    <  SRR4302537.411513/94‑1 (MQ=60)
           AGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAAT                                                                                   >  SRR4302537.1538143/1‑94 (MQ=60)
           AGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAAT                                                                                   >  SRR4302537.52710/1‑94 (MQ=60)
            GCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATC                                                                                  <  SRR4302537.2445214/94‑1 (MQ=60)
              AAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCAT                                                                                >  SRR4302537.4350467/1‑94 (MQ=60)
              AAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCAT                                                                                <  SRR4302537.1334915/94‑1 (MQ=60)
              AAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCAT                                                                                >  SRR4302537.1034782/1‑94 (MQ=60)
                GCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCC                                                                              <  SRR4302537.1644913/94‑1 (MQ=60)
                GCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCC                                                                              <  SRR4302537.5142890/94‑1 (MQ=60)
                 CCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCT                                                                             >  SRR4302537.48596/1‑94 (MQ=60)
                 CCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCT                                                                             >  SRR4302537.5176580/1‑94 (MQ=60)
                 CCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCT                                                                             >  SRR4302537.5752491/1‑94 (MQ=60)
                 CCTCGTATAAATAAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCT                                                                             <  SRR4302537.2800966/94‑1 (MQ=60)
                  CTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGTAAAGCGAAATCATCCTC                                                                            <  SRR4302537.2705235/94‑1 (MQ=60)
                     GTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAAC                                                                         >  SRR4302537.5662457/1‑94 (MQ=60)
                     GTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAAC                                                                         <  SRR4302537.1933677/94‑1 (MQ=60)
                     GTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAAC                                                                         <  SRR4302537.4485462/94‑1 (MQ=60)
                     GTATAAATTAGCGAAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAAC                                                                         <  SRR4302537.835034/94‑1 (MQ=60)
                      TATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACG                                                                        <  SRR4302537.1012975/94‑1 (MQ=60)
                      TATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACG                                                                        >  SRR4302537.5869844/1‑94 (MQ=60)
                       ATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGC                                                                       <  SRR4302537.5696147/94‑1 (MQ=60)
                       ATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGC                                                                       >  SRR4302537.2914585/1‑94 (MQ=60)
                         AAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTA                                                                     >  SRR4302537.5754967/1‑94 (MQ=60)
                         AAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTA                                                                     >  SRR4302537.3042176/1‑94 (MQ=60)
                           ATTGGCGCACCTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAAC                                                                   <  SRR4302537.401062/94‑1 (MQ=60)
                           ATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAAC                                                                   >  SRR4302537.821795/1‑94 (MQ=60)
                           ATTAGCGCAACCCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAAC                                                                   <  SRR4302537.353990/94‑1 (MQ=60)
                           ATTAGCCCACCTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAAC                                                                   <  SRR4302537.5562694/94‑1 (MQ=60)
                           ATAAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAAC                                                                   <  SRR4302537.717800/94‑1 (MQ=60)
                                CGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCA                                                              <  SRR4302537.3741666/94‑1 (MQ=60)
                                CGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCA                                                              >  SRR4302537.4509792/1‑94 (MQ=60)
                                 GCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAG                                                             <  SRR4302537.921919/94‑1 (MQ=60)
                                 GCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAG                                                             >  SRR4302537.866745/1‑94 (MQ=60)
                                  CAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGG                                                            >  SRR4302537.3831092/1‑94 (MQ=60)
                                  CAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGG                                                            >  SRR4302537.2599776/1‑94 (MQ=60)
                                    ACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGAT                                                          >  SRR4302537.1458167/1‑94 (MQ=60)
                                     CTCTCCAGCCGCGAAAAAAATCGCGAGCTGGAAAAAAACGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATG                                                         >  SRR4302537.6513184/1‑94 (MQ=60)
                                       CTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTT                                                       >  SRR4302537.2260414/1‑94 (MQ=60)
                                        CCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTG                                                      <  SRR4302537.3889086/94‑1 (MQ=60)
                                        CCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTG                                                      <  SRR4302537.2583545/94‑1 (MQ=60)
                                          CAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCT                                                    <  SRR4302537.3758382/94‑1 (MQ=60)
                                          CAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCT                                                    <  SRR4302537.4959015/94‑1 (MQ=60)
                                          CAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCT                                                    <  SRR4302537.4731477/94‑1 (MQ=60)
                                           AGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTG                                                   >  SRR4302537.1518730/1‑94 (MQ=60)
                                             CCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAC                                                 <  SRR4302537.707924/94‑1 (MQ=60)
                                             CCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGAC                                                 <  SRR4302537.2651624/94‑1 (MQ=60)
                                              CGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACG                                                <  SRR4302537.6491001/94‑1 (MQ=60)
                                                CGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCG                                              >  SRR4302537.2303508/1‑94 (MQ=60)
                                                  AAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCG                                            >  SRR4302537.3770317/1‑94 (MQ=60)
                                                  AAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGATGACGCGCG                                            <  SRR4302537.5858275/94‑1 (MQ=60)
                                                   aaaaaatcgagagaaaaAAAAACTCGCCGATGAACAGGAAGCGAAAAGAAAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGA                                           <  SRR4302537.4718331/77‑1 (MQ=58)
                                                       AATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCA                                       >  SRR4302537.5091830/1‑94 (MQ=60)
                                                        ATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAA                                      >  SRR4302537.2019176/1‑94 (MQ=60)
                                                          CGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATG                                    >  SRR4302537.4750116/1‑94 (MQ=60)
                                                          CGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATG                                    >  SRR4302537.475939/1‑94 (MQ=60)
                                                          CGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATG                                    >  SRR4302537.6399688/1‑94 (MQ=60)
                                                          CGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATG                                    <  SRR4302537.4486799/94‑1 (MQ=60)
                                                           GCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGG                                   <  SRR4302537.5470066/94‑1 (MQ=60)
                                                           GCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGG                                   >  SRR4302537.6212416/1‑94 (MQ=60)
                                                           GCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGG                                   <  SRR4302537.4902535/94‑1 (MQ=60)
                                                           GCGTGCTGAAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCAAGGATGTTGCTGACGCGCGAGCCAATGG                                   <  SRR4302537.2194296/94‑1 (MQ=60)
                                                            CGTGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGC                                  >  SRR4302537.2629839/1‑94 (MQ=60)
                                                            CGTGCTGGAAAAAATCGCCGATGAACGGGAAGCGCAAAGCAAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGC                                  <  SRR4302537.3178126/94‑1 (MQ=60)
                                                              TGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCT                                >  SRR4302537.6235423/1‑94 (MQ=60)
                                                              TGCTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCT                                >  SRR4302537.562330/1‑94 (MQ=60)
                                                               GCTGAAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTT                               <  SRR4302537.2195700/94‑1 (MQ=60)
                                                                CTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTA                              >  SRR4302537.588074/1‑94 (MQ=60)
                                                                CTGGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTA                              >  SRR4302537.2572895/1‑94 (MQ=60)
                                                                  GGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGC                            <  SRR4302537.4013783/94‑1 (MQ=60)
                                                                  GGAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGC                            >  SRR4302537.298051/1‑94 (MQ=60)
                                                                   GAAAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCG                           >  SRR4302537.6017645/1‑94 (MQ=60)
                                                                     AAAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAA                         >  SRR4302537.4890194/1‑94 (MQ=60)
                                                                      AAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAG                        >  SRR4302537.5298136/1‑94 (MQ=60)
                                                                      AAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAG                        >  SRR4302537.624501/1‑94 (MQ=60)
                                                                      AAAATCGCCGATGAACTGGAAGCGCAAAGCGAAATAATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGCGCCAATGGCCTTAGCGAAG                        >  SRR4302537.1506249/1‑94 (MQ=60)
                                                                      AAAACCGCCGAGAAACTGGAAGCGCAAAGGGAAATCATCCTCAGCGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAG                        <  SRR4302537.3365519/94‑1 (MQ=60)
                                                                        AATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCG                      <  SRR4302537.2172245/94‑1 (MQ=60)
                                                                        AATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCG                      <  SRR4302537.673470/94‑1 (MQ=60)
                                                                        AATCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCG                      <  SRR4302537.4790823/94‑1 (MQ=60)
                                                                          TCGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGAT                    <  SRR4302537.1933480/94‑1 (MQ=60)
                                                                           CGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATG                   >  SRR4302537.3134164/1‑94 (MQ=60)
                                                                           CGCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATG                   <  SRR4302537.6243421/94‑1 (MQ=60)
                                                                            GCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGC                  >  SRR4302537.990834/1‑94 (MQ=60)
                                                                            GCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGC                  >  SRR4302537.5955383/1‑94 (MQ=60)
                                                                            GCCGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGC                  >  SRR4302537.2469596/1‑94 (MQ=60)
                                                                            GCCGATGAACTGAAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGC                  <  SRR4302537.2350450/94‑1 (MQ=60)
                                                                              CTATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTACCGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTT                <  SRR4302537.889049/94‑1 (MQ=60)
                                                                              CGATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTT                >  SRR4302537.1238238/1‑94 (MQ=60)
                                                                              CGATGAACGGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTT                <  SRR4302537.1564049/94‑1 (MQ=60)
                                                                               GATGAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTG               <  SRR4302537.1059758/94‑1 (MQ=60)
                                                                                  GAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACC            <  SRR4302537.2362351/94‑1 (MQ=60)
                                                                                  GAACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACC            >  SRR4302537.3223625/1‑94 (MQ=60)
                                                                                   AACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATTTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCG           <  SRR4302537.727063/94‑1 (MQ=60)
                                                                                   AACTGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCG           <  SRR4302537.5570236/94‑1 (MQ=60)
                                                                                      TGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCT        <  SRR4302537.4482504/94‑1 (MQ=60)
                                                                                      TGGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCT        <  SRR4302537.951114/94‑1 (MQ=60)
                                                                                      TGGAAGCGAAAAGCGAAATCATCCTCACCGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCT        <  SRR4302537.875765/94‑1 (MQ=60)
                                                                                      GGGAAGCGCAAAGCAAAATCATCCTCACCGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCT        <  SRR4302537.3368631/94‑1 (MQ=60)
                                                                                       GGAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTG       >  SRR4302537.1482618/1‑94 (MQ=60)
                                                                                        GAAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGG      <  SRR4302537.5730427/94‑1 (MQ=60)
                                                                                         AAGCGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGC     >  SRR4302537.5769715/1‑94 (MQ=60)
                                                                                           GCGCAAAGCAAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCAC   <  SRR4302537.4688625/94‑1 (MQ=60)
                                                                                            CGCAAAGCGAAATCATCCTCAACGCTACCGCCCAGGATGTTGCGGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACT  <  SRR4302537.2448123/94‑1 (MQ=60)
                                                                                            CGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACT  <  SRR4302537.6344571/94‑1 (MQ=60)
                                                                                            CGCAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACT  >  SRR4302537.6155368/1‑94 (MQ=60)
                                                                                             |                                                                                            
CATTGCCGCGAAGCAAGCCTCGTATAAATTAGCGCAACTCTCCAGCCGCGAAAAAAATCGCGTGCTGGAAAAAATCGCCGATGAACTGGAAGCACAAAGCGAAATCATCCTCAACGCTAACGCCCAGGATGTTGCTGACGCGCGAGCCAATGGCCTTAGCGAAGCGATGCTTGACCGTCTGGCACT  >  NC_000913/260744‑260929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑