Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	272,783	A→G	Y233C (TAC→TGC)	ykfC →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	272,783	0	A	G	100.0%	870.3 / NA	247	Y233C (TAC→TGC)	ykfC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (133/114); total (133/114)

Only 100 of 247 total aligned reads displayed.

GTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCA  >  NC_000913/272693‑272872

gTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGcc                                                                                         >  2:1623894/1‑93 (MQ=255)

gTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGcc                                                                                         >  2:1915373/1‑93 (MQ=255)

 tctcTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCt                                                                                        <  1:2785824/93‑1 (MQ=255)

   tctTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGc                                                                                      >  2:1201181/1‑93 (MQ=255)

   tctTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGc                                                                                      <  1:1860623/93‑1 (MQ=255)

    ctTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCa                                                                                     <  2:5240816/93‑1 (MQ=255)

         gggCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAgc                                                                                <  2:4209929/93‑1 (MQ=255)

         gggCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAgc                                                                                <  2:764823/93‑1 (MQ=255)

         gggCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAgc                                                                                <  1:2706877/93‑1 (MQ=255)

            cggcCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCt                                                                             <  1:1267577/93‑1 (MQ=255)

             ggcCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTa                                                                            >  1:6114992/1‑93 (MQ=255)

             ggcCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTa                                                                            >  1:5435949/1‑93 (MQ=255)

              gcCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTAc                                                                           >  1:2014595/1‑93 (MQ=255)

               ccAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTAcc                                                                          >  1:6316770/1‑93 (MQ=255)

               ccAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTAcc                                                                          <  2:3816015/93‑1 (MQ=255)

                cAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCt                                                                         <  2:2475122/93‑1 (MQ=255)

                cAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCt                                                                         <  2:4499443/93‑1 (MQ=255)

                cAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCt                                                                         >  2:849967/1‑93 (MQ=255)

                    gAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGc                                                                     <  1:585856/93‑1 (MQ=255)

                      aGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCgg                                                                   <  1:1034468/93‑1 (MQ=255)

                      aGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCgg                                                                   <  1:971756/93‑1 (MQ=255)

                        gtgtGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGa                                                                 >  1:6465609/1‑93 (MQ=255)

                          gtgCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGaaa                                                               <  1:1593679/93‑1 (MQ=255)

                          gtgCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGaaa                                                               <  1:1429882/93‑1 (MQ=255)

                            gCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGc                                                             <  1:2926730/93‑1 (MQ=255)

                             ccACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGcc                                                            >  1:4691990/1‑93 (MQ=255)

                             ccACAGGGCGGTGTTATATCGCCGCTATTATCAAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGcc                                                            <  2:2305780/93‑1 (MQ=255)

                               acaGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAg                                                          <  1:5685109/93‑1 (MQ=255)

                                caGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGa                                                         >  1:2423546/1‑93 (MQ=255)

                                 aGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGaa                                                        <  1:5017895/93‑1 (MQ=255)

                                  gggCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGaaa                                                       >  1:1575448/1‑93 (MQ=255)

                                  gggCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGaaa                                                       >  1:3817064/1‑93 (MQ=255)

                                  gggCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGaaa                                                       <  1:2107261/93‑1 (MQ=255)

                                   ggCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGaaaa                                                      <  1:4626811/93‑1 (MQ=255)

                                   ggCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGaaaa                                                      >  2:5022326/1‑93 (MQ=255)

                                   ggCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGaaaa                                                      <  2:1492450/93‑1 (MQ=255)

                                     cGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGa                                                    <  1:3191668/93‑1 (MQ=255)

                                      ggTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGAt                                                   >  2:2803463/1‑93 (MQ=255)

                                      ggTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGAt                                                   >  2:5132389/1‑93 (MQ=255)

                                       gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAACGCCAGAAAAGATc                                                  >  1:1970574/1‑93 (MQ=255)

                                         gtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCgg                                                <  2:4592371/93‑1 (MQ=255)

                                          ttgtatCGCCGCTAATAACCGACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCggt                                               <  2:3686526/90‑1 (MQ=255)

                                          ttATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCggt                                               >  2:3736516/1‑93 (MQ=255)

                                          ttATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCggt                                               <  2:5822741/93‑1 (MQ=255)

                                            atatCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCggtgg                                             <  2:2625053/93‑1 (MQ=255)

                                            atatCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCggtgg                                             <  1:2604648/93‑1 (MQ=255)

                                            atatCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCggtgg                                             >  2:41001/1‑93 (MQ=255)

                                                 gccgcTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTg                                        >  1:6256564/1‑93 (MQ=255)

                                                 gccgcTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTg                                        >  2:4783017/1‑93 (MQ=255)

                                                 gccgcTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTg                                        <  2:1032003/93‑1 (MQ=255)

                                                     cTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAAt                                    >  1:5086377/1‑93 (MQ=255)

                                                      tattatCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATa                                   >  1:2553171/1‑93 (MQ=255)

                                                      tattatCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATa                                   >  2:52852/1‑93 (MQ=255)

                                                       attatCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATaa                                  >  1:5564001/1‑93 (MQ=255)

                                                       attatCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATaa                                  >  1:6215888/1‑93 (MQ=255)

                                                       attatCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATaa                                  <  2:5290602/93‑1 (MQ=255)

                                                        ttatCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAAc                                 <  2:3788237/93‑1 (MQ=255)

                                                          atCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAg                               <  2:6345273/93‑1 (MQ=255)

                                                          atCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAg                               >  2:1803678/1‑93 (MQ=255)

                                                           tCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGt                              >  2:4425974/1‑93 (MQ=255)

                                                           tCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGt                              >  1:5152323/1‑93 (MQ=255)

                                                            cGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTa                             <  1:5741479/93‑1 (MQ=255)

                                                              aaCATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATc                           >  2:6219210/1‑93 (MQ=255)

                                                              aaCATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATc                           <  2:355266/93‑1 (MQ=255)

                                                               aCATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATcc                          >  1:2270508/1‑93 (MQ=255)

                                                                 atcatGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCaa                        <  2:830376/93‑1 (MQ=255)

                                                                   catGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACg                      <  2:43649/93‑1 (MQ=255)

                                                                    atGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACgg                     >  2:5087823/1‑93 (MQ=255)

                                                                    atGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACgg                     >  1:920569/1‑93 (MQ=255)

                                                                    atGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACgg                     <  1:2196351/93‑1 (MQ=255)

                                                                    atGCTGAATGAGTTCGATAAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACgg                     >  1:1718511/1‑93 (MQ=255)

                                                                     tGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACggg                    >  1:4942617/1‑93 (MQ=255)

                                                                     tGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACggg                    <  1:5237019/93‑1 (MQ=255)

                                                                     tGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACggg                    <  2:4036461/93‑1 (MQ=255)

                                                                       cTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGc                  >  1:3251519/1‑93 (MQ=255)

                                                                         gAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCg                >  2:5183930/1‑93 (MQ=255)

                                                                          aaTGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGa               >  2:1384795/1‑93 (MQ=255)

                                                                           aTGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGaa              >  1:4151716/1‑93 (MQ=255)

                                                                            tGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAg             >  2:2007408/1‑93 (MQ=255)

                                                                             gAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGt            >  1:885243/1‑93 (MQ=255)

                                                                             gAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGt            <  2:6050444/93‑1 (MQ=255)

                                                                             gAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGt            >  2:1775747/1‑93 (MQ=255)

                                                                             gAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGGTGTGCTGGAATAACAGTATCCAACGGGGCCGAAGt            <  2:3959605/93‑1 (MQ=255)

                                                                                ttCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcg         <  1:3520703/93‑1 (MQ=255)

                                                                                ttCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcg         >  2:4841990/1‑93 (MQ=255)

                                                                                ttCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcg         <  1:4430199/93‑1 (MQ=255)

                                                                                 tCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcgg        <  1:4878578/93‑1 (MQ=255)

                                                                                  cGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCCACGGGGTCGAAGTAcggc       >  2:5591783/1‑93 (MQ=255)

                                                                                  cGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcggc       <  1:5033694/93‑1 (MQ=255)

                                                                                   gATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcggcg      >  2:3195618/1‑93 (MQ=255)

                                                                                   gATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcggcg      >  1:4094527/1‑93 (MQ=255)

                                                                                    aTCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcggcgg     >  1:3097810/1‑93 (MQ=255)

                                                                                     tCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAcggcggg    >  1:6034182/1‑92 (MQ=255)

                                                                                      cAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTc   >  1:3413899/1‑93 (MQ=255)

                                                                                      cAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTc   >  1:6083738/1‑93 (MQ=255)

                                                                                      cAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTc   >  2:3931691/1‑93 (MQ=255)

                                                                                      cAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTc   >  2:900657/1‑93 (MQ=255)

                                                                                       aaTGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCa  <  1:4717278/93‑1 (MQ=255)

                                                                                       aaTGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCa  <  2:5521478/93‑1 (MQ=255)

                                                                                       aaTGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCa  >  2:1419066/1‑93 (MQ=255)

GTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCA  >  NC_000913/272693‑272872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGA  >  NC_000913/272690‑272876

TCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATG                                                                                               <  SRR4302537.1074608/94‑1 (MQ=60)

TCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATG                                                                                               <  SRR4302537.499903/94‑1 (MQ=60)

    TCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTG                                                                                           >  SRR4302537.2146435/1‑94 (MQ=60)

    TCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTG                                                                                           <  SRR4302537.2805302/94‑1 (MQ=60)

      TCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCA                                                                                         <  SRR4302537.1873578/94‑1 (MQ=60)

        TTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATG                                                                                       <  SRR4302537.4015259/94‑1 (MQ=60)

            GGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCG                                                                                   <  SRR4302537.5457904/94‑1 (MQ=60)

            GGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCG                                                                                   <  SRR4302537.2725775/94‑1 (MQ=60)

               CGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTA                                                                                >  SRR4302537.5473028/1‑94 (MQ=60)

               CGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTA                                                                                >  SRR4302537.6157011/1‑94 (MQ=60)

               CGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTA                                                                                <  SRR4302537.1276392/94‑1 (MQ=60)

                GGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTAC                                                                               <  SRR4302537.1355761/94‑1 (MQ=60)

                GGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTAC                                                                               >  SRR4302537.2028637/1‑94 (MQ=60)

                 GCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACC                                                                              >  SRR4302537.6359997/1‑94 (MQ=60)

                 GCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACC                                                                              <  SRR4302537.892917/94‑1 (MQ=60)

                     GTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAG                                                                          >  SRR4302537.187725/1‑94 (MQ=60)

                      TGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTGCCTGAGC                                                                         <  SRR4302537.5927253/94‑1 (MQ=60)

                      TGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGC                                                                         <  SRR4302537.5058392/94‑1 (MQ=60)

                      TGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGC                                                                         <  SRR4302537.2033316/94‑1 (MQ=60)

                       GAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCG                                                                        <  SRR4302537.589856/94‑1 (MQ=60)

                       GAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCG                                                                        >  SRR4302537.4689279/1‑94 (MQ=60)

                       GAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCG                                                                        >  SRR4302537.266150/1‑94 (MQ=60)

                         AGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGG                                                                      <  SRR4302537.1041595/94‑1 (MQ=60)

                         AGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGG                                                                      <  SRR4302537.978453/94‑1 (MQ=60)

                          GGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGA                                                                     >  SRR4302537.276969/1‑94 (MQ=60)

                          GGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGA                                                                     >  SRR4302537.6509403/1‑94 (MQ=60)

                           GTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATAAGCGCTACCTGAGCGGGAA                                                                    <  SRR4302537.5042860/94‑1 (MQ=60)

                            TGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGAGAAA                                                                   >  SRR4302537.3248477/1‑94 (MQ=60)

                             GTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAG                                                                  <  SRR4302537.1604818/94‑1 (MQ=60)

                             GTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAG                                                                  <  SRR4302537.1439835/94‑1 (MQ=60)

                             GTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAC                                                                  >  SRR4302537.5336031/1‑94 (MQ=60)

                              TGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGC                                                                 >  SRR4302537.2550214/1‑94 (MQ=60)

                              TGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGC                                                                 >  SRR4302537.2593416/1‑94 (MQ=60)

                               GCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCC                                                                <  SRR4302537.2947284/94‑1 (MQ=60)

                               GCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCC                                                                >  SRR4302537.4724441/1‑94 (MQ=60)

                                 CACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAG                                                              >  SRR4302537.6190338/1‑94 (MQ=60)

                                 CACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAG                                                              <  SRR4302537.3532226/94‑1 (MQ=60)

                                 CACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAG                                                              >  SRR4302537.6162585/1‑94 (MQ=60)

                                  ACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGA                                                             >  SRR4302537.4810501/1‑94 (MQ=60)

                                  ACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGA                                                             >  SRR4302537.2440619/1‑94 (MQ=60)

                                  ACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGA                                                             <  SRR4302537.5723989/94‑1 (MQ=60)

                                   CAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAA                                                            <  SRR4302537.1004801/94‑1 (MQ=60)

                                   CAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAA                                                            <  SRR4302537.2006467/94‑1 (MQ=60)

                                   CAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAA                                                            >  SRR4302537.5766341/1‑94 (MQ=60)

                                    AGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAA                                                           >  SRR4302537.1586434/1‑94 (MQ=60)

                                    AGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAA                                                           <  SRR4302537.5052462/94‑1 (MQ=60)

                                    AGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAA                                                           >  SRR4302537.3843833/1‑94 (MQ=60)

                                     GGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAA                                                          <  SRR4302537.233828/94‑1 (MQ=60)

                                     GGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAA                                                          <  SRR4302537.2122116/94‑1 (MQ=60)

                                      GGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAG                                                         >  SRR4302537.2630992/1‑94 (MQ=60)

                                      GGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAG                                                         >  SRR4302537.5612766/1‑94 (MQ=60)

                                      GGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAG                                                         <  SRR4302537.4658830/94‑1 (MQ=60)

                                        CGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGAT                                                       <  SRR4302537.3214109/94‑1 (MQ=60)

                                        CAGTGTGATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGAT                                                       <  SRR4302537.6131568/94‑1 (MQ=60)

                                         GGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAACGCCAGAAAAGATC                                                      >  SRR4302537.3975697/1‑94 (MQ=60)

                                         GGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAACGCCAGAAAAGATC                                                      >  SRR4302537.1984276/1‑94 (MQ=60)

                                         GGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATC                                                      <  SRR4302537.5177536/94‑1 (MQ=60)

                                         GGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATC                                                      <  SRR4302537.5235385/94‑1 (MQ=60)

                                            GTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGT                                                   <  SRR4302537.1609689/94‑1 (MQ=60)

                                             TTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTG                                                  >  SRR4302537.1981985/1‑94 (MQ=60)

                                              TATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGT                                                 >  SRR4302537.4724346/1‑94 (MQ=60)

                                              TATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGG                                                 >  SRR4302537.6498293/1‑94 (MQ=60)

                                               ATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGT                                                <  SRR4302537.2622860/94‑1 (MQ=60)

                                                TATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTA                                               >  SRR4302537.1096257/1‑94 (MQ=60)

                                                TATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTA                                               >  SRR4302537.3797369/1‑94 (MQ=60)

                                                   CGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTG                                            <  SRR4302537.6269615/94‑1 (MQ=60)

                                                   CGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTG                                            >  SRR4302537.6299538/1‑94 (MQ=60)

                                                   CGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTG                                            <  SRR4302537.3243344/94‑1 (MQ=60)

                                                   CGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTG                                            >  SRR4302537.6299539/1‑94 (MQ=60)

                                                     CCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGA                                          <  SRR4302537.1622050/94‑1 (MQ=60)

                                                       GCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAAT                                        >  SRR4302537.5121392/1‑94 (MQ=60)

                                                       GCTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAAT                                        >  SRR4302537.5121393/1‑94 (MQ=60)

                                                        CTATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATA                                       >  SRR4302537.2571081/1‑94 (MQ=60)

                                                         TATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAA                                      >  SRR4302537.5602029/1‑94 (MQ=60)

                                                         TATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAA                                      >  SRR4302537.6258687/1‑94 (MQ=60)

                                                         TATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAA                                      >  SRR4302537.2934460/1‑94 (MQ=60)

                                                         TATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAA                                      >  SRR4302537.5602030/1‑94 (MQ=60)

                                                         TATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAA                                      >  SRR4302537.2080002/1‑94 (MQ=60)

                                                          ATTATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAAC                                     <  SRR4302537.4746390/94‑1 (MQ=60)

                                                            TATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAG                                   >  SRR4302537.2264620/1‑94 (MQ=60)

                                                             ATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGT                                  >  SRR4302537.977870/1‑94 (MQ=60)

                                                             ATCGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGT                                  >  SRR4302537.5187825/1‑94 (MQ=60)

                                                               CGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTAT                                >  SRR4302537.5680011/1‑94 (MQ=60)

                                                               CGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTAT                                >  SRR4302537.98155/1‑94 (MQ=60)

                                                               CGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTAT                                <  SRR4302537.5780792/94‑1 (MQ=60)

                                                               CGAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTAT                                <  SRR4302537.5876928/94‑1 (MQ=60)

                                                                GAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATC                               >  SRR4302537.499384/1‑94 (MQ=60)

                                                                GAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATC                               <  SRR4302537.1539236/94‑1 (MQ=60)

                                                                GAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATC                               >  SRR4302537.1588317/1‑94 (MQ=60)

                                                                GAACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATC                               <  SRR4302537.3503264/94‑1 (MQ=60)

                                                                 AACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCC                              >  SRR4302537.4957978/1‑94 (MQ=60)

                                                                 AACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCC                              >  SRR4302537.2286542/1‑94 (MQ=60)

                                                                 AACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCC                              <  SRR4302537.6329202/94‑1 (MQ=60)

                                                                 AACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCC                              >  SRR4302537.3338957/1‑94 (MQ=60)

                                                                  ACATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCA                             >  SRR4302537.801722/1‑94 (MQ=60)

                                                                   CATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAA                            >  SRR4302537.477236/1‑94 (MQ=60)

                                                                   CATCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAA                            >  SRR4302537.3157759/1‑94 (MQ=60)

                                                                     TCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACG                          <  SRR4302537.654894/94‑1 (MQ=60)

                                                                     TCATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACG                          <  SRR4302537.144147/94‑1 (MQ=60)

                                                                      CATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGG                         >  SRR4302537.926922/1‑94 (MQ=60)

                                                                      CATGCTGAATGAGTTCGATAAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGG                         >  SRR4302537.1730524/1‑94 (MQ=60)

                                                                       ATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGG                        >  SRR4302537.4427774/1‑94 (MQ=60)

                                                                       ATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGG                        <  SRR4302537.2211827/94‑1 (MQ=60)

                                                                       ATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGG                        <  SRR4302537.2460693/94‑1 (MQ=60)

                                                                       ATGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGG                        >  SRR4302537.4976701/1‑94 (MQ=60)

                                                                        TGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGG                       <  SRR4302537.5273053/94‑1 (MQ=60)

                                                                        TGCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGG                       >  SRR4302537.6092000/1‑94 (MQ=60)

                                                                         GCTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGC                      >  SRR4302537.3274439/1‑94 (MQ=60)

                                                                          CTGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCC                     >  SRR4302537.4506387/1‑94 (MQ=60)

                                                                           TGAATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGAGCGGTGGTACTGGAACAACAGTATCCAACagagcaa                    >  SRR4302537.994294/1‑87 (MQ=60)

                                                                             AATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAA                  >  SRR4302537.4180705/1‑94 (MQ=60)

                                                                              ATGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAG                 <  SRR4302537.2213554/94‑1 (MQ=60)

                                                                               TGAGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGT                >  SRR4302537.891338/1‑94 (MQ=60)

                                                                                 AGTTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTAC              <  SRR4302537.4199282/94‑1 (MQ=60)

                                                                                   TTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGG            <  SRR4302537.4460795/94‑1 (MQ=60)

                                                                                   TTCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGG            <  SRR4302537.3545613/94‑1 (MQ=60)

                                                                                    TCGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGC           <  SRR4302537.4912280/94‑1 (MQ=60)

                                                                                     CGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCG          >  SRR4302537.3067757/1‑94 (MQ=60)

                                                                                     CGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCG          <  SRR4302537.5068348/94‑1 (MQ=60)

                                                                                     CGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCG          >  SRR4302537.4123122/1‑94 (MQ=60)

                                                                                     CGATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCG          >  SRR4302537.4154453/1‑94 (MQ=60)

                                                                                      GATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATCACAGTATCCAACGGGGCCGAAGTGCGGCGG         >  SRR4302537.5126528/1‑94 (MQ=60)

                                                                                      GATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGG         >  SRR4302537.3119432/1‑94 (MQ=60)

                                                                                      GATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGG         >  SRR4302537.3041347/1‑94 (MQ=60)

                                                                                       ATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGT        >  SRR4302537.6110345/1‑94 (MQ=60)

                                                                                       ATCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGG        >  SRR4302537.6075643/1‑94 (MQ=60)

                                                                                        TCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTC       >  SRR4302537.6125539/1‑94 (MQ=60)

                                                                                        TCAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTC       >  SRR4302537.3438075/1‑94 (MQ=60)

                                                                                         CAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCA      >  SRR4302537.173753/1‑94 (MQ=60)

                                                                                         CAATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCA      >  SRR4302537.5806616/1‑94 (MQ=60)

                                                                                          AATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAG     <  SRR4302537.4749898/94‑1 (MQ=60)

                                                                                           ATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGA    >  SRR4302537.1306732/1‑94 (MQ=60)

                                                                                           ATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGA    >  SRR4302537.2390709/1‑94 (MQ=60)

                                                                                           ATGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGA    >  SRR4302537.1619032/1‑94 (MQ=60)

                                                                                            TGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCGGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAG   >  SRR4302537.5706207/1‑94 (MQ=60)

                                                                                            TGCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAG   >  SRR4302537.452662/1‑94 (MQ=60)

                                                                                             GCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGA  >  SRR4302537.5306502/1‑94 (MQ=60)

                                                                                             GCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGA  >  SRR4302537.2086032/1‑94 (MQ=60)

                                                                                             GCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGA  >  SRR4302537.5843384/1‑94 (MQ=60)

                                                                                             GCCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGCACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGA  >  SRR4302537.2919396/1‑94 (MQ=60)

TCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGA  >  NC_000913/272690‑272876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`