Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
282,839 |
G→A |
A139T (GCG→ACG) |
yagF → |
putative dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 282,839 | 0 | G | A | 99.5%
| 662.0
/ NA
| 187 | A139T (GCG→ACG) | yagF | putative dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (94/92); minor base C (0/1); total (94/93) |
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 202 total aligned reads displayed.
ATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACGCGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCGCC > NC_000913/282749‑282928
|
aTCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGAcacg < 1:2418338/93‑1 (MQ=255)
tCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACacgg < 2:2880699/93‑1 (MQ=255)
cccGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACacggc < 1:2972968/93‑1 (MQ=255)
cccGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACacggc > 2:2483536/1‑93 (MQ=255)
ccGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAAAGACacggcg > 1:1274820/1‑93 (MQ=255)
cGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGa < 2:4471672/93‑1 (MQ=255)
gTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGAt > 2:5237174/1‑93 (MQ=255)
ttCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATc > 1:1159532/1‑93 (MQ=255)
ttCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATc < 1:2554226/93‑1 (MQ=255)
tggcgGCTTTCGTCAGCGATCCGTCCGACGGGCGCCCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCg < 2:2269877/91‑1 (MQ=255)
tCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCg < 1:1528541/93‑1 (MQ=255)
cgcgGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCgt < 1:63404/93‑1 (MQ=255)
gcgGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCgtg > 1:5802824/1‑93 (MQ=255)
cgGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCgtgt < 1:3265808/93‑1 (MQ=255)
cgGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCgtgt > 2:2789461/1‑93 (MQ=255)
cgGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCgtgt < 2:562228/93‑1 (MQ=255)
cgGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCgtgt > 2:4127069/1‑93 (MQ=255)
cgGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCgtgt > 1:964605/1‑93 (MQ=255)
ggCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGtt < 1:5941426/93‑1 (MQ=255)
ggCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGtt > 1:2739282/1‑93 (MQ=255)
ggCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGtt > 1:4158452/1‑93 (MQ=255)
ggCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGtt < 2:1158142/93‑1 (MQ=255)
gCCTTGGTCAGCGATCCGTGCGACGGGCGCTCGCAGGTCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGttt < 2:1651331/93‑1 (MQ=255)
gCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGttt < 2:1962806/93‑1 (MQ=255)
ccTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTc > 1:1869389/1‑93 (MQ=255)
ccTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTc < 2:214594/93‑1 (MQ=255)
cTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCTATCGTGTTTcg > 2:2889282/1‑93 (MQ=255)
ttCGTCGGCGATCCGTGCGACGGGCGCTCGCGGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTcgc < 1:176493/93‑1 (MQ=255)
ttCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTcgc > 1:6102795/1‑93 (MQ=255)
gTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTcgccgc < 2:4999793/93‑1 (MQ=255)
gTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTcgccgc > 1:4980704/1‑93 (MQ=255)
cAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCt < 2:536195/93‑1 (MQ=255)
cAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCt < 2:4879252/93‑1 (MQ=255)
cAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCt > 1:1393939/1‑93 (MQ=255)
aGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTg > 2:4829260/1‑93 (MQ=255)
aGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTg > 1:858927/1‑93 (MQ=255)
cGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGTCGCCTGAt > 1:2864999/1‑93 (MQ=255)
aTCCGTGCGGCGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGAttc < 2:3369901/93‑3 (MQ=255)
aTCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATcc > 1:820859/1‑93 (MQ=255)
cGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCt < 2:1945831/93‑1 (MQ=255)
cGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCt > 2:1715483/1‑93 (MQ=255)
gCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTccc < 2:4164949/93‑1 (MQ=255)
gACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTg > 1:3216836/1‑93 (MQ=255)
aCGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGc > 1:6393953/1‑93 (MQ=255)
ggCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGa < 1:1250535/93‑1 (MQ=255)
ggCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGa > 1:5516977/1‑93 (MQ=255)
ggCGCCCGCAGCGCACGCACCGTATGTTCGATTCCCTGCCGTACCGCAACGACCCGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGa < 2:5043988/93‑1 (MQ=255)
gcTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGAcgc < 2:505357/93‑1 (MQ=255)
gcTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGAcgc > 1:2888014/1‑93 (MQ=255)
cTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGAcgcg > 1:2372527/1‑93 (MQ=255)
tCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACgcgg > 1:1837956/1‑93 (MQ=255)
cGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACgcggc < 2:4935537/93‑1 (MQ=255)
gCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGCTTCGGCGCCTGATCCGCTCCCTGCCGACgcggcg > 1:3338658/1‑93 (MQ=255)
gggCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGCCGATCGAGTTTCGCCGCCTGATCCGCTCCCTGCCGACGcggcggcc > 1:2703143/1‑91 (MQ=255)
ggCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCggcgggcg > 2:2562486/1‑93 (MQ=255)
acgcacgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTg > 1:3614798/1‑93 (MQ=255)
gcacgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGAt < 2:2370909/93‑1 (MQ=255)
gcacgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGAt > 1:3737923/1‑93 (MQ=255)
gcacgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGAt < 1:978609/93‑1 (MQ=255)
cacgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATc < 1:5415854/93‑1 (MQ=255)
cacgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATc > 1:1936691/1‑93 (MQ=255)
cacgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATc < 1:3414122/93‑1 (MQ=255)
acgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCg > 1:3030394/1‑93 (MQ=255)
acgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCg < 2:2100630/93‑1 (MQ=255)
cgGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCgg > 2:614743/1‑93 (MQ=255)
tATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGt < 2:1357182/93‑1 (MQ=255)
ttGTTCGATTACCTGCCGTACCGCAACGACCCGGCGATCGTGTTTCGCCCCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTa < 1:4307534/92‑1 (MQ=255)
tGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAg < 1:5613096/93‑1 (MQ=255)
tGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAg > 1:3499134/1‑93 (MQ=255)
gTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGc < 2:4975750/93‑1 (MQ=255)
ttCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCg > 1:6468998/1‑93 (MQ=255)
cGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGAc > 2:6020098/1‑93 (MQ=255)
cGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGAc < 2:3145827/93‑1 (MQ=255)
cGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGAc > 2:3866924/1‑93 (MQ=255)
gATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGAcc > 2:5400465/1‑93 (MQ=255)
gATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGAcc < 2:4571023/93‑1 (MQ=255)
aTTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCt < 2:1304766/93‑1 (MQ=255)
aTTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCt > 1:1422306/1‑93 (MQ=255)
aTTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCt > 1:4781046/1‑93 (MQ=255)
tCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGc < 1:1819915/93‑1 (MQ=255)
tCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGc < 1:5350240/93‑1 (MQ=255)
cccTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCg > 1:4007452/1‑93 (MQ=255)
ccTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGa < 1:1803303/93‑1 (MQ=255)
ccTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGa < 2:4045779/93‑1 (MQ=255)
ccTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGa < 1:2063742/93‑1 (MQ=255)
tGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTCGCGACCTGCGATa > 1:1367483/1‑93 (MQ=255)
gCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATaa < 2:6274077/93‑1 (MQ=255)
gCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATaa > 2:1082420/1‑93 (MQ=255)
cGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAg > 2:2697699/1‑93 (MQ=255)
cGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAg < 1:5862749/93‑1 (MQ=255)
gTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAgg < 1:4511062/93‑1 (MQ=255)
gTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAgg > 2:5744891/1‑93 (MQ=255)
gTACCGCAAAGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAgg < 1:2249612/93‑1 (MQ=255)
tACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAggg > 1:5819361/1‑93 (MQ=255)
aCCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGc > 1:1057392/1‑93 (MQ=255)
ccGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCt > 1:6164748/1‑93 (MQ=255)
cAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGcc < 1:1436427/93‑1 (MQ=255)
aaCGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGccc > 2:4144412/1‑93 (MQ=255)
aaCGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGccc > 1:519792/1‑93 (MQ=255)
gacaCGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCGcc > 1:4715192/1‑93 (MQ=255)
|
ATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACGCGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCGCC > NC_000913/282749‑282928
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACGCGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCGCCACCA > NC_000913/282746‑282932
|
GGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACA < SRR4302537.2360700/94‑1 (MQ=60)
GGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACA < SRR4302537.4094293/94‑1 (MQ=60)
GGATCCCTTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACAC < SRR4302537.866351/94‑1 (MQ=60)
GGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACAC < SRR4302537.6255073/94‑1 (MQ=60)
GCATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACAC < SRR4302537.3600895/94‑1 (MQ=60)
GATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACG < SRR4302537.3599687/94‑1 (MQ=60)
ATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGG > SRR4302537.5756578/1‑94 (MQ=60)
ATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGG < SRR4302537.2435381/94‑1 (MQ=60)
CCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCG < SRR4302537.2993794/94‑1 (MQ=60)
CCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAAAGACACGGCG > SRR4302537.1283686/1‑94 (MQ=60)
GTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATC > SRR4302537.2172618/1‑94 (MQ=60)
GTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATC < SRR4302537.2045170/94‑1 (MQ=60)
GTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATC > SRR4302537.1167600/1‑94 (MQ=60)
TTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCG < SRR4302537.2572139/94‑1 (MQ=60)
TCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGT > SRR4302537.300529/1‑94 (MQ=60)
TCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGT < SRR4302537.1539222/94‑1 (MQ=60)
CGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTG > SRR4302537.5842611/1‑94 (MQ=60)
CGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTG < SRR4302537.63878/94‑1 (MQ=60)
GCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGT > SRR4302537.971261/1‑94 (MQ=60)
CGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTT < SRR4302537.3288842/94‑1 (MQ=60)
CGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTT > SRR4302537.2458931/1‑94 (MQ=60)
CGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTT < SRR4302537.1863118/94‑1 (MQ=60)
CGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTT > SRR4302537.2758397/1‑94 (MQ=60)
CGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTT > SRR4302537.4187491/1‑94 (MQ=60)
GGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTT > SRR4302537.3098056/1‑94 (MQ=60)
GGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTT < SRR4302537.5982206/94‑1 (MQ=60)
GCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTC > SRR4302537.1334630/1‑94 (MQ=60)
GCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTC > SRR4302537.2800869/1‑94 (MQ=60)
GCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTC > SRR4302537.1882403/1‑94 (MQ=60)
CCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCG > SRR4302537.3425614/1‑94 (MQ=60)
CCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCG < SRR4302537.1516834/94‑1 (MQ=60)
CCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCG > SRR4302537.1404296/1‑94 (MQ=60)
CTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGC > SRR4302537.6144726/1‑94 (MQ=60)
TTCGTCGGCGATCCGTGCGACGGGCGCTCGCGGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCC < SRR4302537.177744/94‑1 (MQ=60)
CGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCAGGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGC < SRR4302537.617033/94‑1 (MQ=60)
CGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGC > SRR4302537.5015030/1‑94 (MQ=60)
TCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCT > SRR4302537.1403659/1‑94 (MQ=60)
CAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTG < SRR4302537.4708464/94‑1 (MQ=60)
CAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTG > SRR4302537.864825/1‑94 (MQ=60)
CAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTG < SRR4302537.5870221/94‑1 (MQ=60)
GCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGTCGCCTGAT > SRR4302537.2885086/1‑94 (MQ=60)
GCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGAT < SRR4302537.5844900/94‑1 (MQ=60)
GATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCC > SRR4302537.826494/1‑94 (MQ=60)
GATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCC > SRR4302537.5501019/1‑94 (MQ=60)
CCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCT < SRR4302537.1841693/94‑1 (MQ=60)
CGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTG < SRR4302537.1259265/94‑1 (MQ=60)
CGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTG > SRR4302537.3239470/1‑94 (MQ=60)
GACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGC > SRR4302537.6437502/1‑94 (MQ=60)
GGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGA > SRR4302537.5554646/1‑94 (MQ=60)
GGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGAC > SRR4302537.1828345/1‑94 (MQ=60)
GGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGAC < SRR4302537.1259242/94‑1 (MQ=60)
CGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGC > SRR4302537.2908283/1‑94 (MQ=60)
CGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGC > SRR4302537.6199050/1‑94 (MQ=60)
GCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCG > SRR4302537.2389244/1‑94 (MQ=60)
CTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGG > SRR4302537.733579/1‑94 (MQ=60)
CTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGG > SRR4302537.1850748/1‑94 (MQ=60)
CGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCG > SRR4302537.958766/1‑94 (MQ=60)
CGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCG > SRR4302537.332783/1‑94 (MQ=60)
CGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGCTTCGGCGCCTGATCCGCTCCCTGCCGACGCGGCG > SRR4302537.3362295/1‑94 (MQ=60)
CAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGG < SRR4302537.176835/94‑1 (MQ=60)
AGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGC < SRR4302537.6008332/94‑1 (MQ=60)
AGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGC < SRR4302537.6296942/94‑1 (MQ=60)
AGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGCCGATCGAGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGCC > SRR4302537.2722019/1‑94 (MQ=60)
GGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCG > SRR4302537.4931770/1‑94 (MQ=60)
GCACCCCCGGTATGTTCGATCCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGT < SRR4302537.4782214/94‑1 (MQ=60)
CACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTG > SRR4302537.3640279/1‑94 (MQ=60)
CACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTG > SRR4302537.2644443/1‑94 (MQ=60)
CACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTG < SRR4302537.2358314/94‑1 (MQ=60)
CGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGAT > SRR4302537.3764171/1‑94 (MQ=60)
CGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGAT > SRR4302537.4276546/1‑94 (MQ=60)
GCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATC > SRR4302537.1950158/1‑94 (MQ=60)
GCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATC < SRR4302537.985363/94‑1 (MQ=60)
GCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGGGATC > SRR4302537.2432595/1‑94 (MQ=60)
CACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCG < SRR4302537.3438299/94‑1 (MQ=60)
CACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCG < SRR4302537.3869101/94‑1 (MQ=60)
CACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCG > SRR4302537.3051522/1‑94 (MQ=60)
CACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCG < SRR4302537.5452778/94‑1 (MQ=60)
CACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCG > SRR4302537.5417052/1‑94 (MQ=60)
ACGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGG < SRR4302537.592563/94‑1 (MQ=60)
CGGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGC > SRR4302537.4099801/1‑94 (MQ=60)
GGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCG > SRR4302537.3669037/1‑94 (MQ=60)
GGTATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACCCGGCGGGCGGTGCTCGGCG > SRR4302537.4362049/1‑94 (MQ=60)
ttatgtgcgaggCCCTGCCGTGCCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGT < SRR4302537.1141147/82‑1 (MQ=60)
GTATGTTCGATTCCCTGCCGTACGGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCGCCCTGCCGACGCGGCGGGCGGTGATCGGCGT < SRR4302537.5884384/94‑1 (MQ=60)
TTGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGTCGGTGATCGGCGTAG < SRR4302537.2993737/94‑1 (MQ=60)
TTGTTCGATTACCTGCCGTACCGCAACGACCCGGCGATCGTGTTTCGCCCCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAG < SRR4302537.4337475/94‑1 (MQ=60)
ATGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAG > SRR4302537.3523892/1‑94 (MQ=60)
TGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGC < SRR4302537.5651474/94‑1 (MQ=60)
TGTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGGGATCGGCGTAGG > SRR4302537.1390422/1‑94 (MQ=60)
GTTCGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCG > SRR4302537.6512839/1‑94 (MQ=60)
CGATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACC > SRR4302537.5287486/1‑94 (MQ=60)
TATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCG > SRR4302537.3259321/1‑94 (MQ=60)
GATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCT > SRR4302537.4814053/1‑94 (MQ=60)
GATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCT > SRR4302537.1432210/1‑94 (MQ=60)
GATTCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCT > SRR4302537.6432473/1‑94 (MQ=60)
TCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCTACCTGCG > SRR4302537.651182/1‑94 (MQ=60)
TCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCG > SRR4302537.4035501/1‑94 (MQ=60)
TCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCG < SRR4302537.1832597/94‑1 (MQ=60)
TCCCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCG < SRR4302537.5386896/94‑1 (MQ=60)
CCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGAT < SRR4302537.1815887/94‑1 (MQ=60)
CCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGAT > SRR4302537.1939822/1‑94 (MQ=60)
CCTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGAT < SRR4302537.2078233/94‑1 (MQ=60)
CTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTCGCGACCTGCGATA > SRR4302537.1377014/1‑94 (MQ=60)
CTGCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATA < SRR4302537.2894058/94‑1 (MQ=60)
GCCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAA < SRR4302537.1814726/94‑1 (MQ=60)
CCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCGTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAG < SRR4302537.1218990/94‑1 (MQ=60)
CCGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAG < SRR4302537.3581452/94‑1 (MQ=60)
cgcagCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGG < SRR4302537.314806/89‑1 (MQ=60)
CGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGG < SRR4302537.5902955/94‑1 (MQ=60)
CGTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGG < SRR4302537.1160436/94‑1 (MQ=60)
GTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGG < SRR4302537.2735611/94‑1 (MQ=60)
GTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGG > SRR4302537.5859244/1‑94 (MQ=60)
GTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGG < SRR4302537.3513888/94‑1 (MQ=60)
GTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGG > SRR4302537.5189713/1‑94 (MQ=60)
GTACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGG < SRR4302537.4542259/94‑1 (MQ=60)
GTACCGCAAAGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGG < SRR4302537.2265489/94‑1 (MQ=60)
TACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGC > SRR4302537.1064686/1‑94 (MQ=60)
ACCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCT > SRR4302537.6207186/1‑94 (MQ=60)
CCGCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTG > SRR4302537.1435178/1‑94 (MQ=60)
GCAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCC < SRR4302537.828487/94‑1 (MQ=60)
CAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCC < SRR4302537.1446415/94‑1 (MQ=60)
CAACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCC > SRR4302537.523368/1‑94 (MQ=60)
AACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCG < SRR4302537.971420/94‑1 (MQ=60)
AACGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGGGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCC > SRR4302537.5563783/1‑94 (MQ=60)
CGACACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCGCC > SRR4302537.4747803/1‑94 (MQ=60)
ACGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCGCCACCA > SRR4302537.4184779/1‑94 (MQ=60)
|
GGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGGCGCTCGCAGGGCACGCACGGTATGTTCGATTCCCTGCCGTACCGCAACGACGCGGCGATCGTGTTTCGCCGCCTGATCCGCTCCCTGCCGACGCGGCGGGCGGTGATCGGCGTAGCGACCTGCGATAAAGGGCTGCCCGCCACCA > NC_000913/282746‑282932
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
