Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	306,757	A→G	R600R (CGT→CGC)	yagX ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	306,757	0	A	G	100.0%	909.7 / NA	261	R600R (CGT→CGC)	yagX	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (119/142); total (119/142)

Only 100 of 265 total aligned reads displayed.

TTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCACGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATG  >  NC_000913/306668‑306846

ttCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGt                                                                                        <  2:3664222/93‑1 (MQ=255)

      gTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGa                                                                                  >  1:2895228/1‑93 (MQ=255)

      gTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGa                                                                                  <  2:1337538/93‑1 (MQ=255)

       ttCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGAt                                                                                 >  1:4385599/1‑93 (MQ=255)

         ccGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTg                                                                               <  2:3005238/93‑1 (MQ=255)

           gCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGc                                                                             <  1:4569011/93‑1 (MQ=255)

           gCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGc                                                                             >  2:1469554/1‑93 (MQ=255)

           gCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGc                                                                             <  2:2302343/93‑1 (MQ=255)

               gCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCa                                                                         <  1:4488703/93‑1 (MQ=255)

                 gTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAAc                                                                       >  2:3421079/1‑93 (MQ=255)

                 gTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAAc                                                                       >  1:4764071/1‑93 (MQ=255)

                   aaCGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAg                                                                     <  1:6338524/93‑1 (MQ=255)

                   aaCGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAg                                                                     <  1:2992445/93‑1 (MQ=255)

                    aCGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAgg                                                                    >  1:4939986/1‑92 (MQ=255)

                    aCGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGt                                                                    >  1:1321745/1‑93 (MQ=255)

                    aCGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTGTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGt                                                                    <  2:1004707/93‑1 (MQ=255)

                      gAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGTTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGc                                                                  <  1:3462671/93‑1 (MQ=255)

                       aGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCg                                                                 <  2:4921495/93‑1 (MQ=255)

                        gCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGa                                                                >  2:2390021/1‑93 (MQ=255)

                         cGTCGAATTGTGCATCCGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGaa                                                               <  2:4429486/93‑1 (MQ=255)

                         cGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGaa                                                               <  1:5686169/93‑1 (MQ=255)

                          gTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGaag                                                              >  2:1664183/1‑92 (MQ=255)

                          gTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAAt                                                              >  1:2301046/1‑93 (MQ=255)

                          gTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAAt                                                              <  1:1663218/93‑1 (MQ=255)

                            cGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATgg                                                            <  2:5908303/93‑1 (MQ=255)

                             gAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGt                                                           <  1:5250690/93‑1 (MQ=255)

                             gAATGGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGt                                                           <  1:1786589/93‑1 (MQ=255)

                                ttGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTcc                                                        <  1:6455253/93‑1 (MQ=255)

                                 tgtgCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCt                                                       <  1:3721820/93‑1 (MQ=255)

                                 tgtgCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCt                                                       <  2:510566/93‑1 (MQ=255)

                                   tgCATACGCCCCGCCGCTGAGGGGTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtc                                                     >  2:1250774/1‑93 (MQ=255)

                                    gCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtca                                                    <  1:3164671/93‑1 (MQ=255)

                                    gCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtca                                                    <  2:2622122/93‑1 (MQ=255)

                                    gCATACGCCCCGCCGATGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtca                                                    <  1:2647501/93‑1 (MQ=255)

                                     cATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtcat                                                   <  1:2526452/93‑1 (MQ=255)

                                       tACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtcatca                                                 >  2:3129757/1‑93 (MQ=255)

                                       tACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtcatca                                                 >  2:5846485/1‑93 (MQ=255)

                                       tACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtcatca                                                 >  1:1977712/1‑93 (MQ=255)

                                       tACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTtcatca                                                 >  2:3820533/1‑93 (MQ=255)

                                        aCGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCaa                                                <  1:5174342/93‑1 (MQ=255)

                                        aCGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCaa                                                <  1:948836/93‑1 (MQ=255)

                                         cGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCaaa                                               >  1:4633041/1‑93 (MQ=255)

                                          gCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAAc                                              <  2:1916748/93‑1 (MQ=255)

                                          gCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATAGGCACCAACAGTGCGAATGGTTACTTCATCAAAc                                              >  1:124543/1‑93 (MQ=255)

                                           ccccGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGATCCTTCATCAAACt                                             >  2:5476143/1‑93 (MQ=255)

                                            cccGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTg                                            >  1:1175080/1‑93 (MQ=255)

                                            cccGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTAGCACCAACAGTGCGAATGGTTCCTTCATCAAACTg                                            >  2:2656097/1‑93 (MQ=255)

                                             ccgccgCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGt                                           >  2:3986535/1‑93 (MQ=255)

                                             ccgccgCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGt                                           <  2:4118760/93‑1 (MQ=255)

                                             ccgccgCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGt                                           <  2:5794320/93‑1 (MQ=255)

                                              cgncgcNNAGGGTTTTGTCATNNCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGtt                                          <  1:5844240/93‑1 (MQ=255)

                                               gccgcTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGttt                                         <  1:1688840/93‑1 (MQ=255)

                                               gccgcTGAGGATTTTGTCATCACCGGTATCGCCAGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGTTTCCTTCATCAAACTGttt                                         <  1:3860604/93‑1 (MQ=255)

                                                ccgcTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTg                                        <  1:4872051/93‑1 (MQ=255)

                                                ccccTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTg                                        <  1:5307628/90‑1 (MQ=255)

                                                 cgcTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGc                                       >  1:502189/1‑93 (MQ=255)

                                                  gcTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCg                                      >  2:5396065/1‑93 (MQ=255)

                                                  gcTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCg                                      <  2:6225250/93‑1 (MQ=255)

                                                  gcTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCg                                      >  1:5621270/1‑93 (MQ=255)

                                                  gcTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCg                                      >  1:3709257/1‑93 (MQ=255)

                                                    tGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGCCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTg                                    <  2:5162075/93‑1 (MQ=255)

                                                     gAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGc                                   >  2:3896566/1‑93 (MQ=255)

                                                      aGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCt                                  >  2:6002151/1‑93 (MQ=255)

                                                        ggTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGa                                >  1:3639151/1‑93 (MQ=255)

                                                         gTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTgtc                               <  2:6186991/93‑3 (MQ=255)

                                                          ttttGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACa                              <  1:2757828/93‑1 (MQ=255)

                                                          ttttGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACa                              <  1:6136533/93‑1 (MQ=255)

                                                           tttGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAg                             <  1:1899286/93‑1 (MQ=255)

                                                           tttGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAg                             <  1:2022703/93‑1 (MQ=255)

                                                           tttGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAg                             <  1:4494034/93‑1 (MQ=255)

                                                             tGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGt                           <  2:2281145/93‑1 (MQ=255)

                                                              gTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGtt                          <  2:567053/93‑1 (MQ=255)

                                                               tcatcaCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGttt                         >  1:5379278/1‑93 (MQ=255)

                                                               tcatcaCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGttt                         >  1:4219448/1‑93 (MQ=255)

                                                                catcaCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTg                        >  1:1003052/1‑93 (MQ=255)

                                                                 atcaCTGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGc                       >  1:785184/1‑93 (MQ=255)

                                                                 atcaCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGc                       >  1:244774/1‑93 (MQ=255)

                                                                  tcaCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTgtc                      >  2:182338/1‑91 (MQ=255)

                                                                   caCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCa                     >  2:3303611/1‑93 (MQ=255)

                                                                      cGGTGTCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATgg                  <  1:2220257/93‑1 (MQ=255)

                                                                      cGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATgg                  >  2:4554124/1‑93 (MQ=255)

                                                                       ggTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGgt                 >  2:2102113/1‑93 (MQ=255)

                                                                        gTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGgtg                <  1:5267155/93‑1 (MQ=255)

                                                                        gTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGgtg                >  1:2691007/1‑93 (MQ=255)

                                                                         tATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGgtgt               >  2:779611/1‑93 (MQ=255)

                                                                         tATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGgtgt               <  2:4794117/93‑1 (MQ=255)

                                                                         tATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTAACAGGTTTGCCATGgtgt               <  1:2583166/93‑1 (MQ=255)

                                                                          aTCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTa              <  1:3995664/93‑1 (MQ=255)

                                                                           tCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAg             >  1:1432736/1‑93 (MQ=255)

                                                                            cGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGc            <  1:3630737/93‑1 (MQ=255)

                                                                             gCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGcc           <  2:2039014/93‑1 (MQ=255)

                                                                              ccGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCg          >  2:4245974/1‑93 (MQ=255)

                                                                                ggAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGtt        >  2:2831521/1‑93 (MQ=255)

                                                                                 gagaTGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGttt       >  1:661014/1‑93 (MQ=255)

                                                                                 gagaTGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGttt       <  2:5684777/93‑1 (MQ=255)

                                                                                 gagaTGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGttt       <  1:6031159/93‑1 (MQ=255)

                                                                                  agaTGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGtttt      >  2:3035441/1‑93 (MQ=255)

                                                                                  agaTGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGtttt      >  1:893114/1‑93 (MQ=255)

                                                                                   gaTGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTtg     >  2:4357526/1‑93 (MQ=255)

                                                                                   gaTGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTtg     <  1:5427366/93‑1 (MQ=255)

TTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCACGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATG  >  NC_000913/306668‑306846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCACGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATGAGT  >  NC_000913/306664‑306849

GACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCG                                                                                              <  SRR4302537.3093959/94‑1 (MQ=60)

  CGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCG                                                                                            <  SRR4302537.1981337/94‑1 (MQ=60)

      CAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGAC                                                                                        >  SRR4302537.2600054/1‑94 (MQ=60)

       AGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACA                                                                                       >  SRR4302537.4559241/1‑94 (MQ=60)

       AGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACA                                                                                       >  SRR4302537.5327857/1‑94 (MQ=60)

       AGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACA                                                                                       >  SRR4302537.647061/1‑94 (MQ=60)

       AGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACA                                                                                       >  SRR4302537.6228440/1‑94 (MQ=60)

       AGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACA                                                                                       <  SRR4302537.3407168/94‑1 (MQ=60)

         CGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGA                                                                                     >  SRR4302537.2915552/1‑94 (MQ=60)

          GTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGAT                                                                                    >  SRR4302537.4415861/1‑94 (MQ=60)

          GTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGAT                                                                                    <  SRR4302537.2611540/94‑1 (MQ=60)

          GTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGAT                                                                                    >  SRR4302537.5711170/1‑94 (MQ=60)

          GTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGAT                                                                                    >  SRR4302537.3090951/1‑94 (MQ=60)

            TCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTG                                                                                  <  SRR4302537.4095403/94‑1 (MQ=60)

             CCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGG                                                                                 >  SRR4302537.4576268/1‑94 (MQ=60)

              CGCTGGCGTAACGAGCGTCGAATGGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGC                                                                                <  SRR4302537.1587456/94‑1 (MQ=60)

               GCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCA                                                                               <  SRR4302537.4600632/94‑1 (MQ=60)

                 TGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACC                                                                             <  SRR4302537.4606846/94‑1 (MQ=60)

                 TGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGGTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACC                                                                             >  SRR4302537.5628124/1‑94 (MQ=60)

                  GGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCA                                                                            >  SRR4302537.2971251/1‑94 (MQ=60)

                   GCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAA                                                                           <  SRR4302537.4519755/94‑1 (MQ=60)

                    CGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAAC                                                                          >  SRR4302537.4796974/1‑94 (MQ=60)

                    CGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAAC                                                                          <  SRR4302537.2166480/94‑1 (MQ=60)

                      TAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAG                                                                        <  SRR4302537.952010/94‑1 (MQ=60)

                      TAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAG                                                                        >  SRR4302537.5864800/1‑94 (MQ=60)

                       AACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGT                                                                       >  SRR4302537.1330957/1‑94 (MQ=60)

                       AACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGT                                                                       <  SRR4302537.3013326/94‑1 (MQ=60)

                       AACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGT                                                                       <  SRR4302537.6381842/94‑1 (MQ=60)

                       AACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGT                                                                       >  SRR4302537.5081503/1‑94 (MQ=60)

                       AACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGG                                                                       >  SRR4302537.4974055/1‑94 (MQ=60)

                        ACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTG                                                                      <  SRR4302537.2407259/94‑1 (MQ=60)

                         CGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGC                                                                     <  SRR4302537.4667792/94‑1 (MQ=60)

                          GAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGTTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCG                                                                    <  SRR4302537.3487153/94‑1 (MQ=60)

                           AGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGA                                                                   >  SRR4302537.6022329/1‑94 (MQ=60)

                            GCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAA                                                                  <  SRR4302537.1888466/94‑1 (MQ=60)

                             CGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAAT                                                                 >  SRR4302537.2016990/1‑94 (MQ=60)

                             CGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAAT                                                                 >  SRR4302537.2381501/1‑94 (MQ=60)

                             CGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAAT                                                                 >  SRR4302537.2317290/1‑94 (MQ=60)

                             CGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAAT                                                                 <  SRR4302537.5725061/94‑1 (MQ=60)

                             CGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAAT                                                                 >  SRR4302537.1979177/1‑94 (MQ=60)

                              GTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATG                                                                <  SRR4302537.5462723/94‑1 (MQ=60)

                              GTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATG                                                                <  SRR4302537.106225/94‑1 (MQ=60)

                              GTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATG                                                                <  SRR4302537.1849434/94‑1 (MQ=60)

                              GTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATG                                                                <  SRR4302537.1674870/94‑1 (MQ=60)

                                 GAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTT                                                             <  SRR4302537.5286822/94‑1 (MQ=60)

                                 GAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTT                                                             <  SRR4302537.2667398/94‑1 (MQ=60)

                                 GAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTT                                                             <  SRR4302537.5248426/94‑1 (MQ=60)

                                 GAATGGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTT                                                             <  SRR4302537.1799048/94‑1 (MQ=60)

                                  AATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTC                                                            <  SRR4302537.1268315/94‑1 (MQ=60)

                                  AATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTC                                                            <  SRR4302537.5567946/94‑1 (MQ=60)

                                  AATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTC                                                            <  SRR4302537.4662202/94‑1 (MQ=60)

                                   ATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCC                                                           >  SRR4302537.1226644/1‑94 (MQ=60)

                                    TTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCT                                                          <  SRR4302537.6499013/94‑1 (MQ=60)

                                    TTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCT                                                          >  SRR4302537.1776662/1‑94 (MQ=60)

                                     TGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTT                                                         <  SRR4302537.3747969/94‑1 (MQ=60)

                                       TGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCA                                                       >  SRR4302537.3743212/1‑94 (MQ=60)

                                        GCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCAT                                                      <  SRR4302537.6078746/94‑1 (MQ=60)

                                        GCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCAT                                                      <  SRR4302537.3186893/94‑1 (MQ=60)

                                        GCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCAT                                                      <  SRR4302537.5227790/94‑1 (MQ=60)

                                        GCATACGCCCCGCCGATGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCAT                                                      <  SRR4302537.2666013/94‑1 (MQ=60)

                                         CATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATC                                                     <  SRR4302537.2544180/94‑1 (MQ=60)

                                          ATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCA                                                    >  SRR4302537.1991454/1‑94 (MQ=60)

                                            ACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAA                                                  >  SRR4302537.4665090/1‑94 (MQ=60)

                                            ACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAA                                                  <  SRR4302537.5209958/94‑1 (MQ=60)

                                            ACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAA                                                  <  SRR4302537.955399/94‑1 (MQ=60)

                                             CGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATAGGCACCAACAGTGCGAATGGTTACTTCATCAAAC                                                 >  SRR4302537.125437/1‑94 (MQ=60)

                                              GCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACT                                                >  SRR4302537.6274642/1‑94 (MQ=60)

                                               CCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTG                                               >  SRR4302537.813795/1‑94 (MQ=60)

                                               CCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTG                                               >  SRR4302537.1183251/1‑94 (MQ=60)

                                               CCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTG                                               >  SRR4302537.4343895/1‑94 (MQ=60)

                                                CCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGT                                              <  SRR4302537.2698087/94‑1 (MQ=60)

                                                 CCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTT                                             <  SRR4302537.5309279/94‑1 (MQ=60)

                                                  CGNCGCNNAGGGTTTTGTCATNNCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTT                                            <  SRR4302537.5884311/94‑1 (MQ=60)

                                                  CGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTT                                            <  SRR4302537.998051/94‑1 (MQ=60)

                                                  CGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTT                                            >  SRR4302537.1694019/1‑94 (MQ=60)

                                                   GCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTG                                           <  SRR4302537.1700664/94‑1 (MQ=60)

                                                   GCCGCTGAGGATTTTGTCATCACCGGTATCGCCAGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGTTTCCTTCATCAAACTGTTTG                                           <  SRR4302537.3887628/94‑1 (MQ=60)

                                                    CCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGC                                          >  SRR4302537.505639/1‑94 (MQ=60)

                                                    CCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGC                                          <  SRR4302537.4905678/94‑1 (MQ=60)

                                                    CCCCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGC                                          <  SRR4302537.5344096/94‑1 (MQ=60)

                                                     CGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCG                                         >  SRR4302537.3735334/1‑94 (MQ=60)

                                                     CGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCG                                         >  SRR4302537.5659705/1‑94 (MQ=60)

                                                      GCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGT                                        <  SRR4302537.2533583/94‑1 (MQ=60)

                                                       CTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTG                                       >  SRR4302537.2239589/1‑94 (MQ=60)

                                                       CTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTG                                       >  SRR4302537.1401369/1‑94 (MQ=60)

                                                          AGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTG                                    <  SRR4302537.4945210/94‑1 (MQ=60)

                                                          AGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTG                                    >  SRR4302537.5363308/1‑94 (MQ=60)

                                                           GGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTacggaatagatcggaagagcgg                                   >  SRR4302537.4324264/1‑72 (MQ=60)

                                                           GGGTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGA                                   >  SRR4302537.3664780/1‑94 (MQ=60)

                                                             GTTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACA                                 <  SRR4302537.708435/94‑1 (MQ=60)

                                                              TTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAG                                <  SRR4302537.2777079/94‑1 (MQ=60)

                                                              TTTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAG                                <  SRR4302537.6178721/94‑1 (MQ=60)

                                                               TTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGG                               <  SRR4302537.5800960/94‑1 (MQ=60)

                                                               TTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGG                               <  SRR4302537.2036813/94‑1 (MQ=60)

                                                               TTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGG                               <  SRR4302537.1912480/94‑1 (MQ=60)

                                                               TTTGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGG                               <  SRR4302537.4525123/94‑1 (MQ=60)

                                                                 TGTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTT                             <  SRR4302537.2614103/94‑1 (MQ=60)

                                                                  GTCATCACCGGTATCGCCGGAGATGGCGCGTGTCAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTT                            >  SRR4302537.4940322/1‑94 (MQ=60)

                                                                  GTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTT                            >  SRR4302537.5416069/1‑94 (MQ=60)

                                                                  GTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTT                            >  SRR4302537.451987/1‑94 (MQ=60)

                                                                  GTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTT                            >  SRR4302537.4492972/1‑94 (MQ=60)

                                                                  GTCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTT                            >  SRR4302537.4248849/1‑94 (MQ=60)

                                                                   TCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTG                           >  SRR4302537.1009973/1‑94 (MQ=60)

                                                                   TCATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTG                           <  SRR4302537.3976772/94‑1 (MQ=60)

                                                                    CATCACTGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGC                          >  SRR4302537.790573/1‑94 (MQ=60)

                                                                    CATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGC                          >  SRR4302537.2791997/1‑94 (MQ=60)

                                                                    CATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGC                          >  SRR4302537.246508/1‑94 (MQ=60)

                                                                     ATCACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACCGGGTTGCC                         >  SRR4302537.979360/1‑94 (MQ=60)

                                                                       CACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCAT                       >  SRR4302537.3804734/1‑94 (MQ=60)

                                                                        CCCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATG                      <  SRR4302537.4831029/94‑1 (MQ=60)

                                                                        ACCGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATG                      <  SRR4302537.1774546/94‑1 (MQ=60)

                                                                          CGGTGTCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGT                    <  SRR4302537.2235904/94‑1 (MQ=60)

                                                                          CGGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGT                    <  SRR4302537.2736348/94‑1 (MQ=60)

                                                                          CGGGATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGT                    <  SRR4302537.5443588/94‑1 (MQ=60)

                                                                           GGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTG                   >  SRR4302537.2709786/1‑94 (MQ=60)

                                                                           GGTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTG                   >  SRR4302537.2006414/1‑94 (MQ=60)

                                                                            GTATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGT                  <  SRR4302537.5303400/94‑1 (MQ=60)

                                                                             TATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTA                 <  SRR4302537.2909010/94‑1 (MQ=60)

                                                                             TATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTA                 >  SRR4302537.3685827/1‑94 (MQ=60)

                                                                             TATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTA                 <  SRR4302537.3656448/94‑1 (MQ=60)

                                                                             TATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTAACAGGTTTGCCATGGTGTA                 <  SRR4302537.2601243/94‑1 (MQ=60)

                                                                              ATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAG                <  SRR4302537.647921/94‑1 (MQ=60)

                                                                              ATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAG                <  SRR4302537.4023633/94‑1 (MQ=60)

                                                                              ATCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAG                >  SRR4302537.1442705/1‑94 (MQ=60)

                                                                               TCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGC               <  SRR4302537.1252545/94‑1 (MQ=60)

                                                                               TCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGC               <  SRR4302537.5293443/94‑1 (MQ=60)

                                                                               TCGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGC               >  SRR4302537.3733960/1‑94 (MQ=60)

                                                                                CGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCC              <  SRR4302537.3656322/94‑1 (MQ=60)

                                                                                CGCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCC              >  SRR4302537.4838021/1‑94 (MQ=60)

                                                                                 GCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCG             >  SRR4302537.5128018/1‑94 (MQ=60)

                                                                                 GCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCG             <  SRR4302537.2495892/94‑1 (MQ=60)

                                                                                 GCCGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCG             <  SRR4302537.3578553/94‑1 (MQ=60)

                                                                                  CCGTAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACGTTTTGCGTGCTGTCAGGTTTGCCATGGTGTAGCCGT            <  SRR4302537.652307/94‑1 (MQ=60)

                                                                                   CGGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTT           <  SRR4302537.699986/94‑1 (MQ=60)

                                                                                    GGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCTTTCATCAAACTGTTTGCGTGCTGTCAGGTTTGCCATGGTGTCGCCGTTT          >  SRR4302537.606099/1‑94 (MQ=60)

                                                                                    GGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTT          >  SRR4302537.665514/1‑94 (MQ=60)

                                                                                    GGAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTT          <  SRR4302537.2093474/94‑1 (MQ=60)

                                                                                     GAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTT         <  SRR4302537.366000/94‑1 (MQ=60)

                                                                                     GAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTT         >  SRR4302537.899276/1‑94 (MQ=60)

                                                                                     GAGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTT         <  SRR4302537.6072599/94‑1 (MQ=60)

                                                                                      AGATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCGATGGTGTAGCCGTTTTG        >  SRR4302537.4436798/1‑94 (MQ=60)

                                                                                       GATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGA       <  SRR4302537.1567781/94‑1 (MQ=60)

                                                                                       GATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGA       <  SRR4302537.5464371/94‑1 (MQ=60)

                                                                                       GATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGA       >  SRR4302537.5050322/1‑94 (MQ=60)

                                                                                        ATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGAT      <  SRR4302537.794616/94‑1 (MQ=60)

                                                                                        ATGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGAT      >  SRR4302537.1399241/1‑94 (MQ=60)

                                                                                         TGGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATG     <  SRR4302537.3448813/94‑1 (MQ=60)

                                                                                          GGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATGA    <  SRR4302537.3847321/94‑1 (MQ=60)

                                                                                          GGCGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCATTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATGA    <  SRR4302537.292776/94‑1 (MQ=60)

                                                                                            CGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATGAGT  >  SRR4302537.4299162/1‑94 (MQ=60)

                                                                                            CGCGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATGAGT  >  SRR4302537.1361073/1‑94 (MQ=60)

GACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGAGGGTTTTGTCATCACCGGTATCGCCGGAGATGGCACGTGACAGATTGGCACCAACAGTGCGAATGGTTCCTTCATCAAACTGTTTGCGTGCTGACAGGTTTGCCATGGTGTAGCCGTTTTGATGAGT  >  NC_000913/306664‑306849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`