Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
308,315 |
A→G |
L81P (CTG→CCG) |
yagX ← |
hypothetical protein |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 308,315 | 0 | A | G | 99.6%
| 896.8
/ ‑4.9
| 260 | L81P (CTG→CCG) | yagX | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (136/123); total (137/123) |
Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.17e-01 |
Only 100 of 281 total aligned reads displayed.
ATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCAGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCGTCC > NC_000913/308225‑308404
|
aTCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTccggc > 1:2393300/1‑93 (MQ=255)
tCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTccggcc > 1:6330603/1‑93 (MQ=255)
cAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTAATTTCCGGATGCGTAGCTGTCCATCGTccggcca > 1:3300914/1‑93 (MQ=255)
aGCTGCTGTCTAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTccggccag > 1:768826/1‑93 (MQ=255)
aGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTccggccag > 1:360766/1‑93 (MQ=255)
tgctgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATa < 2:4915127/93‑1 (MQ=255)
tgctgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATa < 2:2892559/93‑1 (MQ=255)
gctgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATaa > 1:3673333/1‑93 (MQ=255)
gctgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATaa > 1:5085274/1‑93 (MQ=255)
ctgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATaaa > 1:4202191/1‑93 (MQ=255)
ctgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATaaa < 1:6127310/93‑1 (MQ=255)
ctgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATaaa > 2:3275951/1‑93 (MQ=255)
tgTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATaaaa < 2:5410844/93‑1 (MQ=255)
gTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAg < 2:5433404/93‑1 (MQ=255)
gTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAg > 1:2185488/1‑93 (MQ=255)
gTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAg > 2:5277147/1‑93 (MQ=255)
gTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAg < 1:4661093/93‑1 (MQ=255)
tCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAgc < 1:580032/93‑1 (MQ=255)
gAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAgcgc < 2:358879/93‑1 (MQ=255)
gAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAgcgc > 2:4727217/1‑93 (MQ=255)
aGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCt > 1:2830431/1‑93 (MQ=255)
tttGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGc > 1:915154/1‑93 (MQ=255)
tttGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGc > 2:4515205/1‑93 (MQ=255)
ttGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGGTAAAAGCGCTGcc < 2:6205361/93‑1 (MQ=255)
ttGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGcc < 1:1260430/93‑1 (MQ=255)
ttCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGAt > 2:4281749/1‑93 (MQ=255)
ttCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGAt < 1:4956775/93‑1 (MQ=255)
tCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGAtt < 1:4832908/93‑1 (MQ=255)
tGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCt > 2:3421578/1‑93 (MQ=255)
gACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTg < 2:767592/93‑1 (MQ=255)
acacTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGa < 2:2514154/93‑1 (MQ=255)
acTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATc > 2:1394386/1‑93 (MQ=255)
cTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCg < 1:6206483/93‑1 (MQ=255)
cTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCg > 2:5014002/1‑93 (MQ=255)
cTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCg > 2:4448735/1‑93 (MQ=255)
tGGGGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGt > 2:3525031/1‑93 (MQ=255)
ggCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTc > 2:2770687/1‑93 (MQ=255)
gCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTcc > 1:5940012/1‑93 (MQ=255)
cGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCt < 2:1785787/93‑1 (MQ=255)
ttATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTgg > 1:5318873/1‑93 (MQ=255)
ttATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTgg > 2:5822176/1‑93 (MQ=255)
tATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGc > 1:4407875/1‑93 (MQ=255)
aTCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCg > 1:5590410/1‑93 (MQ=255)
tCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGa > 2:5243851/1‑93 (MQ=255)
tCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGa > 2:3374104/1‑93 (MQ=255)
cTTCCCTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGAc < 1:46825/93‑1 (MQ=255)
cTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCTGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGAc < 2:3900659/93‑1 (MQ=255)
cTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGAc > 1:3494625/1‑93 (MQ=255)
tCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGAccc < 1:3775645/93‑1 (MQ=255)
tCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGAccc < 1:2629829/93‑1 (MQ=255)
tCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGAccc < 1:5516128/93‑1 (MQ=255)
aCTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTg > 2:2739412/1‑93 (MQ=255)
ctctctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTgg < 1:4052731/93‑1 (MQ=255)
tctctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAACAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGc > 1:486886/1‑93 (MQ=255)
tctctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGc > 2:3312582/1‑93 (MQ=255)
tctctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGc > 2:5947962/1‑93 (MQ=255)
ctctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCt > 2:537084/1‑93 (MQ=255)
tctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTa < 1:6079502/93‑1 (MQ=255)
tctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTa > 2:1558378/1‑93 (MQ=255)
ctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTAc < 1:2976791/93‑1 (MQ=255)
ctTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTAc < 1:653360/93‑1 (MQ=255)
ttCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTAcc < 1:229161/93‑1 (MQ=255)
gCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCga > 1:3685366/1‑93 (MQ=255)
gCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCga > 2:4820646/1‑93 (MQ=255)
cTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCgag > 1:1580500/1‑93 (MQ=255)
cTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCgag > 2:1756941/1‑93 (MQ=255)
gTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAGAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGAt > 1:4548718/1‑93 (MQ=255)
gTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCgagag > 1:206418/1‑92 (MQ=255)
gTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGAt > 1:4780975/1‑93 (MQ=255)
tATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATg > 2:5910764/1‑93 (MQ=255)
tATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATg > 1:3036596/1‑93 (MQ=255)
aTTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGa > 1:730201/1‑93 (MQ=255)
ttttCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGaa > 2:5569039/1‑93 (MQ=255)
ttttCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGaa > 1:2762773/1‑93 (MQ=255)
tttCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAat < 2:3134928/93‑1 (MQ=255)
tCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAatat < 1:2450932/93‑1 (MQ=255)
ccGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAAtata < 2:2060932/93‑1 (MQ=255)
cGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATag < 2:2338355/93‑1 (MQ=255)
cGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATag < 1:1275445/93‑1 (MQ=255)
ggATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTgg > 2:1271924/1‑62 (MQ=255)
ggATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATaga < 1:1441692/93‑1 (MQ=255)
gATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATagag > 1:1737050/1‑93 (MQ=255)
cGTAGCTGTCCATCGTCCGGCGAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCggg < 2:2597545/93‑1 (MQ=255)
gTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGa < 2:5722023/93‑1 (MQ=255)
gTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGa > 2:5088332/1‑93 (MQ=255)
tAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAc > 1:1205779/1‑93 (MQ=255)
tAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAc > 2:903119/1‑93 (MQ=255)
tAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAc > 2:4387181/1‑93 (MQ=255)
tAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAc > 2:3848940/1‑93 (MQ=255)
tAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAc > 1:1823767/1‑93 (MQ=255)
gCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGc > 1:639217/1‑93 (MQ=255)
cTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCt > 1:5361387/1‑93 (MQ=255)
tGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTc < 2:2138254/93‑1 (MQ=255)
tGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTc < 2:1617583/93‑1 (MQ=255)
gTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCa < 1:3459884/93‑1 (MQ=255)
gTCAATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCa < 2:6125802/93‑1 (MQ=255)
ccATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATg > 2:1065542/1‑93 (MQ=255)
ccATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATg > 1:450456/1‑93 (MQ=255)
cATCGTCCGTCCAGATAAAAGCGCTGCCGATTCGCGGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGc < 2:4156788/93‑1 (MQ=255)
aTCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGcc < 1:856390/93‑1 (MQ=255)
|
ATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCAGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCGTCC > NC_000913/308225‑308404
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCAGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCGTCCTGAA > NC_000913/308222‑308408
|
GCCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCG < SRR4302537.3004380/94‑1 (MQ=60)
GCCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCG < SRR4302537.2394263/94‑1 (MQ=60)
GCCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCG > SRR4302537.3649203/1‑94 (MQ=60)
GCCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCG < SRR4302537.13791/94‑1 (MQ=60)
GCCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCG > SRR4302537.1643349/1‑94 (MQ=60)
CCATCAGCTGCTGTCTAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGG < SRR4302537.1035433/94‑1 (MQ=60)
CCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGG < SRR4302537.4084370/94‑1 (MQ=60)
CATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGC > SRR4302537.2410153/1‑94 (MQ=60)
CATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGC > SRR4302537.412253/1‑94 (MQ=60)
CATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGC > SRR4302537.149910/1‑94 (MQ=60)
ATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCC > SRR4302537.4351448/1‑94 (MQ=60)
ATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCC > SRR4302537.3360203/1‑94 (MQ=60)
ATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCC > SRR4302537.6373891/1‑94 (MQ=60)
TCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCA > SRR4302537.4350458/1‑94 (MQ=60)
TCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTAATTTCCGGATGCGTAGCTGTCCATCGTCCGGCCA > SRR4302537.3324255/1‑94 (MQ=60)
CAGCTGCTGTCTAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAG > SRR4302537.774098/1‑94 (MQ=60)
CAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAG > SRR4302537.127427/1‑94 (MQ=60)
CAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAG > SRR4302537.363275/1‑94 (MQ=60)
CAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAG < SRR4302537.6132299/94‑1 (MQ=60)
AGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGA > SRR4302537.4999030/1‑94 (MQ=60)
AGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGA > SRR4302537.1834383/1‑94 (MQ=60)
GCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGAT < SRR4302537.2843553/94‑1 (MQ=60)
CTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCAATCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATA > SRR4302537.5109093/1‑94 (MQ=60)
TGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAA > SRR4302537.5120273/1‑94 (MQ=60)
TGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAA > SRR4302537.3699176/1‑94 (MQ=60)
GCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAA > SRR4302537.4231528/1‑94 (MQ=60)
CTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAA < SRR4302537.6169424/94‑1 (MQ=60)
TGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAG > SRR4302537.2200886/1‑94 (MQ=60)
TGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAG < SRR4302537.3486785/94‑1 (MQ=60)
TGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAG > SRR4302537.1429237/1‑94 (MQ=60)
GTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGC > SRR4302537.2422735/1‑94 (MQ=60)
GTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGC < SRR4302537.4693311/94‑1 (MQ=60)
TCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCG < SRR4302537.584001/94‑1 (MQ=60)
CGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGC > SRR4302537.4685912/1‑94 (MQ=60)
CGAGTTTGTTCGCTGACACTGGCGTTATCCTCCCTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGC < SRR4302537.6189721/94‑1 (MQ=60)
GAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCT < SRR4302537.3516349/94‑1 (MQ=60)
GAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCT > SRR4302537.705359/1‑94 (MQ=60)
GAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCT > SRR4302537.2850208/1‑94 (MQ=60)
AGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTG < SRR4302537.2115235/94‑1 (MQ=60)
GTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGC < SRR4302537.3687593/94‑1 (MQ=60)
GTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGC > SRR4302537.921472/1‑94 (MQ=60)
TTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCC > SRR4302537.2738740/1‑94 (MQ=60)
TTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCG < SRR4302537.1269197/94‑1 (MQ=60)
TTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATT < SRR4302537.4990949/94‑1 (MQ=60)
TCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTC < SRR4302537.4866280/94‑1 (MQ=60)
TCGCTGACACTGGCGTTATCTTCACTCCCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTC > SRR4302537.2863775/1‑94 (MQ=60)
TGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTG < SRR4302537.2819584/94‑1 (MQ=60)
TGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTG < SRR4302537.4761237/94‑1 (MQ=60)
ACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGAT < SRR4302537.5977690/94‑1 (MQ=60)
ACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTACGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGAT < SRR4302537.2047325/94‑1 (MQ=60)
CACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATC > SRR4302537.2298120/1‑94 (MQ=60)
CACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATC < SRR4302537.879784/94‑1 (MQ=60)
CACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATC < SRR4302537.2930195/94‑1 (MQ=60)
ACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCG > SRR4302537.5134214/1‑94 (MQ=60)
ACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCG < SRR4302537.821465/94‑1 (MQ=60)
ACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCG > SRR4302537.903652/1‑94 (MQ=60)
CTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGT < SRR4302537.6249251/94‑1 (MQ=60)
TGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTC < SRR4302537.561307/94‑1 (MQ=60)
GGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCC > SRR4302537.5980781/1‑94 (MQ=60)
GCCGTTATCTTCGCTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCC < SRR4302537.3614064/94‑1 (MQ=60)
GCTTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCT < SRR4302537.5510607/94‑1 (MQ=60)
CGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTG > SRR4302537.468700/1‑94 (MQ=60)
CGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCAGCCAGATACAAGCGCTGCCGATTCGCTGATCGTACTG > SRR4302537.6231879/1‑94 (MQ=60)
GTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGG < SRR4302537.5692619/94‑1 (MQ=60)
GTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGG > SRR4302537.5355386/1‑94 (MQ=60)
ctgctgaaccgctcttccgatctattccgtCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGC < SRR4302537.1280764/64‑1 (MQ=60)
TTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGC < SRR4302537.2318254/94‑1 (MQ=60)
TTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGC > SRR4302537.4438296/1‑94 (MQ=60)
TATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCG > SRR4302537.5628628/1‑94 (MQ=60)
ATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGA > SRR4302537.4880482/1‑94 (MQ=60)
ATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGA > SRR4302537.2150012/1‑94 (MQ=60)
TCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGAC > SRR4302537.3519349/1‑94 (MQ=60)
CTTCCCTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACC < SRR4302537.47172/94‑1 (MQ=60)
CTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACC > SRR4302537.6114953/1‑94 (MQ=60)
TCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCT < SRR4302537.3802155/94‑1 (MQ=60)
TCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCT < SRR4302537.3707648/94‑1 (MQ=60)
TCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCT < SRR4302537.5553791/94‑1 (MQ=60)
TCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCT < SRR4302537.3054388/94‑1 (MQ=60)
TCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCT < SRR4302537.2648243/94‑1 (MQ=60)
CACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTG > SRR4302537.3243211/1‑94 (MQ=60)
CTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAACAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGC > SRR4302537.490229/1‑94 (MQ=60)
CTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGC > SRR4302537.4709128/1‑94 (MQ=60)
CTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGC < SRR4302537.4081070/94‑1 (MQ=60)
TCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCT > SRR4302537.234488/1‑94 (MQ=60)
TCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTAC < SRR4302537.5832574/94‑1 (MQ=60)
TCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTAC < SRR4302537.6121279/94‑1 (MQ=60)
CTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACC < SRR4302537.657813/94‑1 (MQ=60)
CTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACC > SRR4302537.4882737/1‑94 (MQ=60)
CTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACC < SRR4302537.2997623/94‑1 (MQ=60)
CTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACC < SRR4302537.3111648/94‑1 (MQ=60)
TTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCG < SRR4302537.230783/94‑1 (MQ=60)
TCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGG > SRR4302537.1731708/1‑94 (MQ=60)
TCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGG > SRR4302537.4730946/1‑94 (MQ=60)
TCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGG < SRR4302537.4568303/94‑1 (MQ=60)
AGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGA > SRR4302537.3711286/1‑94 (MQ=60)
AGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGA > SRR4302537.1335587/1‑94 (MQ=60)
AGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGA > SRR4302537.5239849/1‑94 (MQ=60)
GCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAG > SRR4302537.1591547/1‑94 (MQ=60)
CTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGA > SRR4302537.264380/1‑94 (MQ=60)
TGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAGAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGAT > SRR4302537.4580197/1‑94 (MQ=60)
TGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGAT > SRR4302537.4964367/1‑94 (MQ=60)
TGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGAT < SRR4302537.4819543/94‑1 (MQ=60)
TGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGAT > SRR4302537.4813982/1‑94 (MQ=60)
TGTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGAG > SRR4302537.207896/1‑94 (MQ=60)
GTATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATG > SRR4302537.3057763/1‑94 (MQ=60)
TATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGA > SRR4302537.735188/1‑94 (MQ=60)
ATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAA > SRR4302537.2782047/1‑94 (MQ=60)
ATTTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAA > SRR4302537.4952924/1‑94 (MQ=60)
TTTCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATA < SRR4302537.6473284/94‑1 (MQ=60)
TCCGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATA < SRR4302537.2468175/94‑1 (MQ=60)
CGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGA < SRR4302537.1628458/94‑1 (MQ=60)
CGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGA < SRR4302537.4006717/94‑1 (MQ=60)
CGGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGA < SRR4302537.1284315/94‑1 (MQ=60)
GGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAG < SRR4302537.1451739/94‑1 (MQ=60)
GGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAG < SRR4302537.5472366/94‑1 (MQ=60)
GGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAG > SRR4302537.6322104/1‑94 (MQ=60)
GGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAG > SRR4302537.6322105/1‑94 (MQ=60)
GGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAG > SRR4302537.6384199/1‑94 (MQ=60)
GGATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAG > SRR4302537.1749166/1‑94 (MQ=60)
GATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGC < SRR4302537.1853787/94‑1 (MQ=60)
ATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCG > SRR4302537.2540909/1‑94 (MQ=60)
ATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCG < SRR4302537.3604422/94‑1 (MQ=60)
ATGCGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCG < SRR4302537.785168/94‑1 (MQ=60)
CGTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGA > SRR4302537.3746968/1‑94 (MQ=60)
GTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCTCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAC < SRR4302537.3770966/94‑1 (MQ=60)
GTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAC > SRR4302537.1214171/1‑94 (MQ=60)
GTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAC > SRR4302537.752144/1‑94 (MQ=60)
GTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAC > SRR4302537.1836479/1‑94 (MQ=60)
GTAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGAC < SRR4302537.1266522/94‑1 (MQ=60)
TAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACG < SRR4302537.3906615/94‑1 (MQ=60)
TAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACG < SRR4302537.3391616/94‑1 (MQ=60)
TAGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACG < SRR4302537.5958023/94‑1 (MQ=60)
AGCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGC > SRR4302537.643569/1‑94 (MQ=60)
GCTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCT > SRR4302537.5398096/1‑94 (MQ=60)
CTGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTC > SRR4302537.751682/1‑94 (MQ=60)
TGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCA > SRR4302537.6001140/1‑94 (MQ=60)
TGTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCA < SRR4302537.6509816/94‑1 (MQ=60)
GTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCAT < SRR4302537.3484346/94‑1 (MQ=60)
GTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCAT > SRR4302537.47113/1‑94 (MQ=60)
GTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCAT < SRR4302537.6420997/94‑1 (MQ=60)
GTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCAT < SRR4302537.4559936/94‑1 (MQ=60)
GTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCAT < SRR4302537.5372784/94‑1 (MQ=60)
GTCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCAT < SRR4302537.4081858/94‑1 (MQ=60)
GTCCATCGCCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGGCGCTCAT < SRR4302537.365131/94‑1 (MQ=60)
TCCATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATG > SRR4302537.453572/1‑94 (MQ=60)
CATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCC > SRR4302537.4504117/1‑94 (MQ=60)
CATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCC < SRR4302537.2754968/94‑1 (MQ=60)
ATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCG < SRR4302537.862268/94‑1 (MQ=60)
ATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCG > SRR4302537.2213191/1‑94 (MQ=60)
ATCGTCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCG > SRR4302537.1549771/1‑94 (MQ=60)
TCCGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCGTCCT < SRR4302537.5564443/94‑1 (MQ=60)
CGGCCAGATAAAATCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCGTCCTGA < SRR4302537.3581541/94‑1 (MQ=60)
CGGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGGCGCTCATGCCGTCCTGA < SRR4302537.1185539/94‑1 (MQ=60)
GGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCGTCCTGAA > SRR4302537.508721/1‑94 (MQ=60)
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GCCATCAGCTGCTGTCGAGTTTGTTCGCTGACACTGGCGTTATCTTCACTCTCTTCCAGCTGTATTTTCCGGATGCGTAGCTGTCCATCGTCCAGCCAGATAAAAGCGCTGCCGATTCGCTGATCGTCCTGGCGACCCTGGCTACCGGCGAGATGAATATAGAGCGGGACGCTCATGCCGTCCTGAA > NC_000913/308222‑308408
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Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |