Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	323,547	C→T	A189V (GCC→GTC)	ykgG →	putative transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	323,547	0	C	T	100.0%	905.6 / NA	254	A189V (GCC→GTC)	ykgG	putative transporter
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (135/119); total (135/119)

Only 100 of 258 total aligned reads displayed.

TCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGCCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATG  >  NC_000913/323457‑323636

tcacGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCg                                                                                         <  1:5658856/90‑1 (MQ=255)

tCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCg                                                                                         >  2:2091771/1‑93 (MQ=255)

tCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCg                                                                                         >  1:5818524/1‑93 (MQ=255)

  ccGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGt                                                                                       >  1:3513635/1‑93 (MQ=255)

   cGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGGGCAGGTCGGTg                                                                                      >  2:4117620/1‑93 (MQ=255)

   cGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTg                                                                                      <  1:1887681/93‑1 (MQ=255)

   cGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTg                                                                                      >  1:876060/1‑93 (MQ=255)

   cGGAATATTCTCTTTTTATCCGGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTg                                                                                      <  2:3616569/93‑1 (MQ=255)

     gAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGaa                                                                                    >  1:4958793/1‑93 (MQ=255)

     gAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGaa                                                                                    >  2:6430787/1‑93 (MQ=255)

     gAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGaa                                                                                    >  2:2898268/1‑93 (MQ=255)

     gAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGaa                                                                                    <  2:5845579/93‑1 (MQ=255)

     gAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGaa                                                                                    >  2:5885183/1‑93 (MQ=255)

      aaTATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAAc                                                                                   >  1:1012962/1‑93 (MQ=255)

      aaTATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAAc                                                                                   <  2:1274268/93‑1 (MQ=255)

       atatTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACg                                                                                  >  2:5575851/1‑93 (MQ=255)

         atTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGaa                                                                                >  2:3887021/1‑93 (MQ=255)

         atTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGaa                                                                                <  1:3821036/93‑1 (MQ=255)

         atTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGaa                                                                                >  2:1119424/1‑93 (MQ=255)

           tctcTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATg                                                                              >  2:3128396/1‑93 (MQ=255)

           tctcTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATg                                                                              <  2:81404/93‑1 (MQ=255)

              ctTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCt                                                                           <  1:1615013/93‑1 (MQ=255)

                ttttATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTc                                                                         <  1:4161241/93‑1 (MQ=255)

                ttttATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCCTc                                                                         >  2:239651/1‑93 (MQ=255)

                 tttATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTcc                                                                        <  1:232508/93‑1 (MQ=255)

                 tttATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTcc                                                                        <  1:22849/93‑1 (MQ=255)

                   tATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTg                                                                      >  2:927771/1‑93 (MQ=255)

                   tATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTg                                                                      >  2:4864951/1‑93 (MQ=255)

                     tCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCa                                                                    <  2:2736078/93‑1 (MQ=255)

                     tCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCa                                                                    >  1:3372210/1‑93 (MQ=255)

                      ccTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCAt                                                                   >  2:4029938/1‑93 (MQ=255)

                      ccTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCAt                                                                   >  2:3495699/1‑93 (MQ=255)

                       cTGCGTATAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCAtt                                                                  >  2:6137697/1‑93 (MQ=255)

                       cTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCAtt                                                                  >  2:4846795/1‑93 (MQ=255)

                        tGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGCACGAATGACTTCCTGCATTa                                                                 >  2:77445/1‑93 (MQ=255)

                          cGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAAc                                                               <  2:4489680/93‑1 (MQ=255)

                            tAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAAcat                                                             >  2:4380006/1‑93 (MQ=255)

                            tAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAAcat                                                             <  2:2473357/93‑1 (MQ=255)

                            tAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAAcat                                                             >  2:2238828/1‑93 (MQ=255)

                                 gCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTa                                                        <  1:500048/93‑1 (MQ=255)

                                 gCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTa                                                        <  2:5195257/93‑1 (MQ=255)

                                 gCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTa                                                        <  2:3345078/93‑1 (MQ=255)

                                  cACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAg                                                       >  1:6169868/1‑93 (MQ=255)

                                  cACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAg                                                       <  2:1073363/93‑1 (MQ=255)

                                   aCTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGc                                                      >  2:440055/1‑93 (MQ=255)

                                   aCTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGc                                                      >  1:6103775/1‑93 (MQ=255)

                                    cTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCg                                                     >  2:2063816/1‑93 (MQ=255)

                                    cTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCg                                                     >  1:3682401/1‑93 (MQ=255)

                                     tATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCgg                                                    >  2:36960/1‑93 (MQ=255)

                                     tATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCgg                                                    >  1:1899931/1‑93 (MQ=255)

                                      aTCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGc                                                   <  2:3318689/93‑1 (MQ=255)

                                       tCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGcc                                                  >  1:3258667/1‑93 (MQ=255)

                                        ccTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGccc                                                 <  1:2663538/93‑1 (MQ=255)

                                         cTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGcccc                                                >  1:5241462/1‑93 (MQ=255)

                                          tGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCa                                               <  1:675319/93‑1 (MQ=255)

                                           gCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAg                                              <  1:3008004/93‑1 (MQ=255)

                                           gCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAg                                              <  1:5846692/93‑1 (MQ=255)

                                             cgcgTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCTGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGtt                                            >  1:4557912/1‑93 (MQ=255)

                                                gtgtAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCaa                                         <  1:4077359/93‑1 (MQ=255)

                                                 tgtAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAAc                                        <  2:4303873/93‑1 (MQ=255)

                                                 tgtAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAAc                                        <  2:3782943/93‑1 (MQ=255)

                                                   tAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAAcgg                                      <  1:5485430/93‑1 (MQ=255)

                                                    aGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGGTCAAcggc                                     >  1:2036855/1‑93 (MQ=255)

                                                       gcAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGa                                  >  1:77981/1‑93 (MQ=255)

                                                       gcAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGa                                  >  1:3180059/1‑93 (MQ=255)

                                                         aaCTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGata                                <  1:738451/93‑1 (MQ=255)

                                                         aaCTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGata                                <  1:2094475/93‑1 (MQ=255)

                                                         aaCTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGata                                >  1:4346293/1‑93 (MQ=255)

                                                          aCTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGatat                               >  2:6048601/1‑93 (MQ=255)

                                                           cTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATAtt                              <  2:1187464/93‑1 (MQ=255)

                                                            tCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTg                             >  1:1372072/1‑93 (MQ=255)

                                                              gCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAg                           >  1:5463991/1‑93 (MQ=255)

                                                                aGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCt                         >  2:1220403/1‑93 (MQ=255)

                                                                aGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCt                         <  1:3637756/93‑1 (MQ=255)

                                                                 gAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCtt                        >  1:1301605/1‑93 (MQ=255)

                                                                    aaaTTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCAGCCCCAGTTCAACGGCGGATATTGAGCTTATc                     <  1:6425030/93‑1 (MQ=255)

                                                                     aaTTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCa                    >  1:1241248/1‑93 (MQ=255)

                                                                      aTTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCaa                   <  1:3948961/93‑1 (MQ=255)

                                                                      aTTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCaa                   <  1:1540364/93‑1 (MQ=255)

                                                                      aTTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCaa                   >  2:1522578/1‑93 (MQ=255)

                                                                       ttGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCaaa                  >  2:5362569/1‑93 (MQ=255)

                                                                        tGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAg                 <  2:543855/93‑1 (MQ=255)

                                                                         gCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAgt                <  1:4014813/93‑1 (MQ=255)

                                                                         gCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAgt                <  1:3478780/93‑1 (MQ=255)

                                                                           aTCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAgtcg              >  1:3753322/1‑93 (MQ=255)

                                                                              aGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGtcgtcg           >  2:2348304/1‑93 (MQ=255)

                                                                              aGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGtcgtcg           <  1:537784/93‑1 (MQ=255)

                                                                              aGAAAGCGCAGGTCGGCGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGtcgtcg           >  2:2005501/1‑93 (MQ=255)

                                                                               gAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCgg          <  1:5916606/93‑1 (MQ=255)

                                                                                 aaGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAg        <  1:2712996/93‑1 (MQ=255)

                                                                                 aaGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAg        <  2:1671711/93‑1 (MQ=255)

                                                                                  aGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGt       <  1:3120372/93‑1 (MQ=255)

                                                                                  aGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGt       <  2:3766663/93‑1 (MQ=255)

                                                                                     gcAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCa    <  2:4957173/93‑1 (MQ=255)

                                                                                     gcAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCa    >  1:167474/1‑93 (MQ=255)

                                                                                      cAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCAt   <  1:5575851/93‑1 (MQ=255)

                                                                                      cAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCAt   >  1:2897761/1‑93 (MQ=255)

                                                                                      cAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCAt   <  1:4226901/93‑1 (MQ=255)

                                                                                       aGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATg  <  2:1384258/93‑1 (MQ=255)

                                                                                       aGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATg  <  2:1877152/93‑1 (MQ=255)

TCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGCCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATG  >  NC_000913/323457‑323636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGCCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATGGCCC  >  NC_000913/323454‑323640

TGCTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGT                                                                                               <  SRR4302537.3697329/94‑1 (MQ=60)

TGCTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGT                                                                                               <  SRR4302537.3272420/94‑1 (MQ=60)

  CTCCCGTAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCG                                                                                             <  SRR4302537.4667643/94‑1 (MQ=60)

  CTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCG                                                                                             >  SRR4302537.5858405/1‑94 (MQ=60)

  CTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCG                                                                                             >  SRR4302537.429062/1‑94 (MQ=60)

  CTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCG                                                                                             <  SRR4302537.4138128/94‑1 (MQ=60)

  CTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCG                                                                                             >  SRR4302537.2153442/1‑94 (MQ=60)

  CTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCG                                                                                             >  SRR4302537.1960159/1‑94 (MQ=60)

   TCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGG                                                                                            >  SRR4302537.6510739/1‑94 (MQ=60)

   TCACGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGG                                                                                            <  SRR4302537.5697588/94‑1 (MQ=60)

    CCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGT                                                                                           >  SRR4302537.3538492/1‑94 (MQ=60)

     CCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTG                                                                                          >  SRR4302537.882085/1‑94 (MQ=60)

     CCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTG                                                                                          <  SRR4302537.4098921/94‑1 (MQ=60)

      CGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGA                                                                                         >  SRR4302537.1093400/1‑94 (MQ=60)

      CGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGA                                                                                         <  SRR4302537.3622618/94‑1 (MQ=60)

      CGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGA                                                                                         <  SRR4302537.1900806/94‑1 (MQ=60)

       GGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAA                                                                                        >  SRR4302537.4992976/1‑94 (MQ=60)

        GAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAAC                                                                                       >  SRR4302537.1019944/1‑94 (MQ=60)

         AATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACG                                                                                      <  SRR4302537.6156041/94‑1 (MQ=60)

         AATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACG                                                                                      <  SRR4302537.2789436/94‑1 (MQ=60)

          ATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGA                                                                                     >  SRR4302537.163464/1‑94 (MQ=60)

          ATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGA                                                                                     >  SRR4302537.5289632/1‑94 (MQ=60)

            ATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAAT                                                                                   <  SRR4302537.3847827/94‑1 (MQ=60)

            ATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAAT                                                                                   >  SRR4302537.5572270/1‑94 (MQ=60)

              TCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGC                                                                                 >  SRR4302537.4156633/1‑94 (MQ=60)

                 CTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTT                                                                              <  SRR4302537.1626296/94‑1 (MQ=60)

                 CTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTT                                                                              <  SRR4302537.3257189/94‑1 (MQ=60)

                 CTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTT                                                                              >  SRR4302537.2549981/1‑94 (MQ=60)

                  TTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTC                                                                             <  SRR4302537.5151232/94‑1 (MQ=60)

                  TTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTC                                                                             <  SRR4302537.341630/94‑1 (MQ=60)

                  TTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTC                                                                             >  SRR4302537.3157481/1‑94 (MQ=60)

                   TTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCC                                                                            <  SRR4302537.4190302/94‑1 (MQ=60)

                    TTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCT                                                                           <  SRR4302537.23025/94‑1 (MQ=60)

                    TTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCT                                                                           <  SRR4302537.234149/94‑1 (MQ=60)

                    TTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCT                                                                           <  SRR4302537.2306381/94‑1 (MQ=60)

                       ATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCA                                                                        >  SRR4302537.3396107/1‑94 (MQ=60)

                        TCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCAT                                                                       <  SRR4302537.85981/94‑1 (MQ=60)

                          CTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTA                                                                     <  SRR4302537.5945088/94‑1 (MQ=60)

                             CGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAGTTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACA                                                                  >  SRR4302537.358163/1‑94 (MQ=60)

                             CGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACA                                                                  >  SRR4302537.3980608/1‑94 (MQ=60)

                             CGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACA                                                                  <  SRR4302537.1636897/94‑1 (MQ=60)

                             CGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACA                                                                  <  SRR4302537.1611917/94‑1 (MQ=60)

                               TAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATC                                                                <  SRR4302537.368427/94‑1 (MQ=60)

                                AAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCA                                                               <  SRR4302537.3011182/94‑1 (MQ=60)

                                AAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCA                                                               >  SRR4302537.1950644/1‑94 (MQ=60)

                                AAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCA                                                               <  SRR4302537.698160/94‑1 (MQ=60)

                                  AAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATT                                                             >  SRR4302537.3825249/1‑94 (MQ=60)

                                   AGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTA                                                            <  SRR4302537.5646824/94‑1 (MQ=60)

                                    GCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAG                                                           >  SRR4302537.6212353/1‑94 (MQ=60)

                                    GCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAG                                                           <  SRR4302537.503486/94‑1 (MQ=60)

                                     CACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGC                                                          >  SRR4302537.6145713/1‑94 (MQ=60)

                                      ACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCG                                                         >  SRR4302537.4395764/1‑94 (MQ=60)

                                      ACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCG                                                         >  SRR4302537.3708299/1‑94 (MQ=60)

                                       CTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGG                                                        >  SRR4302537.1913127/1‑94 (MQ=60)

                                       CTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGG                                                        >  SRR4302537.5977152/1‑94 (MQ=60)

                                       CTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGG                                                        <  SRR4302537.3129522/94‑1 (MQ=60)

                                         ATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCC                                                      >  SRR4302537.3281644/1‑94 (MQ=60)

                                         ATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCC                                                      >  SRR4302537.5377975/1‑94 (MQ=60)

                                         ATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCC                                                      >  SRR4302537.205579/1‑94 (MQ=60)

                                         ATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCC                                                      >  SRR4302537.2704231/1‑94 (MQ=60)

                                           CCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCC                                                    <  SRR4302537.3991257/94‑1 (MQ=60)

                                           CCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCC                                                    <  SRR4302537.1351241/94‑1 (MQ=60)

                                           CCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCC                                                    >  SRR4302537.5277533/1‑94 (MQ=60)

                                           CCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCC                                                    <  SRR4302537.2682144/94‑1 (MQ=60)

                                            CTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCA                                                   >  SRR4302537.1789018/1‑94 (MQ=60)

                                             TGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAG                                                  <  SRR4302537.679942/94‑1 (MQ=60)

                                              GCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGT                                                 <  SRR4302537.5886782/94‑1 (MQ=60)

                                              GCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGT                                                 <  SRR4302537.3028944/94‑1 (MQ=60)

                                               CCGCGTGTAGCGCATCTCGCAGAAAAAGTGCATCAGAAAGCGCAGGTCGGTGAACGAATTCCTTCCTGCATTAACATCATTAGCGGCCCCAGTT                                                <  SRR4302537.72575/94‑1 (MQ=60)

                                               CCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCTGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTT                                                >  SRR4302537.4589465/1‑94 (MQ=60)

                                                 GCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCA                                              >  SRR4302537.3021254/1‑94 (MQ=60)

                                                 GCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCA                                              <  SRR4302537.269340/94‑1 (MQ=60)

                                                  CGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAA                                             >  SRR4302537.760948/1‑94 (MQ=60)

                                                   GTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAAC                                            <  SRR4302537.4105828/94‑1 (MQ=60)

                                                    TGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACG                                           >  SRR4302537.1303933/1‑94 (MQ=60)

                                                    TGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACG                                           <  SRR4302537.1455880/94‑1 (MQ=60)

                                                     GTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGG                                          <  SRR4302537.5880537/94‑1 (MQ=60)

                                                     GTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGG                                          <  SRR4302537.2142760/94‑1 (MQ=60)

                                                      TAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGC                                         <  SRR4302537.5522875/94‑1 (MQ=60)

                                                      TAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGGTCAACGGC                                         >  SRR4302537.2051055/1‑94 (MQ=60)

                                                       AGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCG                                        <  SRR4302537.5501231/94‑1 (MQ=60)

                                                       AGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCG                                        <  SRR4302537.432910/94‑1 (MQ=60)

                                                         CGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGA                                      >  SRR4302537.78552/1‑94 (MQ=60)

                                                         CGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGA                                      >  SRR4302537.3202408/1‑94 (MQ=60)

                                                          GCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGAT                                     >  SRR4302537.3338036/1‑94 (MQ=60)

                                                           CAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATA                                    >  SRR4302537.4376423/1‑94 (MQ=60)

                                                           CAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATA                                    <  SRR4302537.5023351/94‑1 (MQ=60)

                                                           CAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATA                                    <  SRR4302537.5023350/94‑1 (MQ=60)

                                                            AACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATAT                                   <  SRR4302537.2109245/94‑1 (MQ=60)

                                                            AACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATAT                                   <  SRR4302537.743483/94‑1 (MQ=60)

                                                             ACTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATT                                  <  SRR4302537.3831899/94‑1 (MQ=60)

                                                              CTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTG                                 >  SRR4302537.1381650/1‑94 (MQ=60)

                                                              CTCGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTG                                 >  SRR4302537.1307597/1‑94 (MQ=60)

                                                                CGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAG                               >  SRR4302537.5418622/1‑94 (MQ=60)

                                                                CGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAG                               >  SRR4302537.3517675/1‑94 (MQ=60)

                                                                CGCAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAG                               >  SRR4302537.5501260/1‑94 (MQ=60)

                                                                  CAGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCT                             <  SRR4302537.6080980/94‑1 (MQ=60)

                                                                   AGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTT                            <  SRR4302537.3663373/94‑1 (MQ=60)

                                                                   AGAAAAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTT                            >  SRR4302537.1310655/1‑94 (MQ=60)

                                                                       AAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCA                        >  SRR4302537.1249876/1‑94 (MQ=60)

                                                                       AAATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCAGCCCCAGTTCAACGGCGGATATTGAGCTTATCA                        <  SRR4302537.6468691/94‑1 (MQ=60)

                                                                        AATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAA                       >  SRR4302537.5830860/1‑94 (MQ=60)

                                                                        AATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAA                       >  SRR4302537.1747486/1‑94 (MQ=60)

                                                                        AATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAA                       >  SRR4302537.4118659/1‑94 (MQ=60)

                                                                         ATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAA                      <  SRR4302537.3976580/94‑1 (MQ=60)

                                                                         ATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAA                      <  SRR4302537.1551113/94‑1 (MQ=60)

                                                                         ATTGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAA                      >  SRR4302537.3230490/1‑94 (MQ=60)

                                                                           TGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGT                    <  SRR4302537.375670/94‑1 (MQ=60)

                                                                           TGCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGT                    <  SRR4302537.5604138/94‑1 (MQ=60)

                                                                            GCATCAGAACGCGCAGTGCGGTGAGCGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTC                   <  SRR4302537.5731998/94‑1 (MQ=60)

                                                                            GCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTC                   <  SRR4302537.3503395/94‑1 (MQ=60)

                                                                            GCATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTC                   <  SRR4302537.4042926/94‑1 (MQ=60)

                                                                             CATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCG                  <  SRR4302537.4220583/94‑1 (MQ=60)

                                                                             CATCAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCG                  >  SRR4302537.3779681/1‑94 (MQ=60)

                                                                                CAGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCG               >  SRR4302537.1507653/1‑94 (MQ=60)

                                                                                 AGAAAGCGTAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGG              <  SRR4302537.646803/94‑1 (MQ=60)

                                                                                 AGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGG              <  SRR4302537.541473/94‑1 (MQ=60)

                                                                                 AGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGG              >  SRR4302537.4845594/1‑94 (MQ=60)

                                                                                 AGAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGCATATTGAGCTTATCAAAGTCGTCGG              >  SRR4302537.6290262/1‑94 (MQ=60)

                                                                                  GAAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGA             <  SRR4302537.5957202/94‑1 (MQ=60)

                                                                                   AAAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAG            >  SRR4302537.3475408/1‑94 (MQ=60)

                                                                                    AAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGT           <  SRR4302537.4536126/94‑1 (MQ=60)

                                                                                    AAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGT           <  SRR4302537.2731944/94‑1 (MQ=60)

                                                                                    AAGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGT           <  SRR4302537.3747013/94‑1 (MQ=60)

                                                                                     AGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTT          <  SRR4302537.5512272/94‑1 (MQ=60)

                                                                                     AGCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTT          <  SRR4302537.3142186/94‑1 (MQ=60)

                                                                                      GCGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTC         <  SRR4302537.772172/94‑1 (MQ=60)

                                                                                       CGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCA        >  SRR4302537.168668/1‑94 (MQ=60)

                                                                                       CGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCA        >  SRR4302537.250126/1‑94 (MQ=60)

                                                                                       CGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCA        <  SRR4302537.3146233/94‑1 (MQ=60)

                                                                                       CGCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGATCA        >  SRR4302537.5924294/1‑94 (MQ=60)

                                                                                        GCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCAT       <  SRR4302537.190114/94‑1 (MQ=60)

                                                                                        GCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCAT       >  SRR4302537.2918119/1‑94 (MQ=60)

                                                                                        GCAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGGTCAT       >  SRR4302537.3904066/1‑94 (MQ=60)

                                                                                         CAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATG      <  SRR4302537.5613958/94‑1 (MQ=60)

                                                                                         CAGGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATG      <  SRR4302537.4256336/94‑1 (MQ=60)

                                                                                           GGTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATGGC    <  SRR4302537.4990456/94‑1 (MQ=60)

                                                                                            GTCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATGGCC   >  SRR4302537.2641639/1‑94 (MQ=60)

                                                                                             TCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGGTCATGGCCC  >  SRR4302537.1551540/1‑94 (MQ=60)

TGCTCCCGGAATATTCTCTTTTTATCCTGCGTAAAAGCACTATCCTGCCGCGTGTAGCGCAACTCGCAGAAAAATTGCATCAGAAAGCGCAGGCCGGTGAACGAATGCCTTCCTGCATTAACATCATTAGCGGCCCCAGTTCAACGGCGGATATTGAGCTTATCAAAGTCGTCGGAGTTCATGGCCC  >  NC_000913/323454‑323640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`