Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
385,203 |
A→G |
S269G (AGC→GGC) |
tauA → |
TauA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 385,203 | 0 | A | G | 96.3%
| 708.0
/ 12.0
| 219 | S269G (AGC→GGC) | tauA | TauA |
| Reads supporting (aligned to +/- strand): ref base A (5/3); new base G (116/94); total (122/97) |
| Fisher's exact test for biased strand distribution p-value = 7.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.61e-01 |
Only 100 of 228 total aligned reads displayed.
GTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACG > NC_000913/385113‑385292
|
gTCGTGAAAGCGTTCGCTAAAAGCGCAATCGATGCTCAGAAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGc < 1:2904118/93‑1 (MQ=255)
tCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCa > 1:4272040/1‑93 (MQ=255)
tCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCa > 2:3530983/1‑93 (MQ=255)
cGTGAAAGCGCTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCaa < 1:4525455/93‑1 (MQ=255)
gTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCaa‑a > 1:356513/1‑93 (MQ=255)
gAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACTGCCGCAAAACATCGGCAA‑ACt > 1:480198/1‑93 (MQ=255)
gAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACt < 2:2844889/93‑1 (MQ=255)
aaaGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTg > 2:4745217/1‑93 (MQ=255)
aaGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTgg > 2:123258/1‑93 (MQ=255)
aaGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTgg < 1:1229133/93‑1 (MQ=255)
gCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAA‑ACTGgcg > 1:6256664/1‑93 (MQ=255)
gTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCCGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGcgcg > 2:2117029/1‑93 (MQ=255)
ttCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGt < 1:6061164/93‑1 (MQ=255)
ttCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGt < 1:4982455/93‑1 (MQ=255)
ttCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGt < 2:3306246/93‑1 (MQ=255)
gCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAACACATCGGCAA‑ACTGGCGGGATTa > 2:618616/1‑93 (MQ=255)
cTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTaa > 1:2662054/1‑93 (MQ=255)
cTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTaa < 2:4376730/93‑1 (MQ=255)
tAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTCACCCAGACGTGTGGCTGAAACAGCCGGAAAACATC‑GCAACACTGGTGCGTTTAAg > 2:3770497/1‑93 (MQ=255)
tAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAg > 1:6392356/1‑93 (MQ=255)
tAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAg > 2:5315438/1‑93 (MQ=255)
aaaaGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAgc < 1:5760639/93‑1 (MQ=255)
aaaaGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAgc < 1:6177181/93‑1 (MQ=255)
aaaGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAgcg > 1:4556185/1‑93 (MQ=255)
aaaGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAgcg < 1:5493603/93‑1 (MQ=255)
aaGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAgcgg < 2:4093276/93‑1 (MQ=255)
gcgcCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAgcggcg > 1:4703507/1‑93 (MQ=255)
cgcCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGt < 1:2032999/93‑1 (MQ=255)
cgcCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGt < 2:5373443/93‑1 (MQ=255)
gcCATCGATGCTCAGCAGCCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTg < 1:2416418/93‑1 (MQ=255)
gcCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTg > 2:3806644/1‑93 (MQ=255)
gcCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTg < 2:70287/93‑1 (MQ=255)
cATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGcc < 2:5150612/93‑1 (MQ=255)
aTCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAGACATCAGCAA‑ACTAGCGCGTTTAAGACGCGTGCCt > 2:5791464/1‑93 (MQ=255)
tCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTg < 1:6307420/93‑1 (MQ=255)
cGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGa > 2:3044303/1‑93 (MQ=255)
cGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGa < 2:5762919/93‑1 (MQ=255)
gATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGaa < 1:2513278/93‑1 (MQ=255)
aaTGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGaa < 1:4498870/92‑1 (MQ=255)
aTGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAg > 1:3998893/1‑93 (MQ=255)
gCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGt < 2:4869797/93‑1 (MQ=255)
gCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGt < 1:1575993/93‑1 (MQ=255)
tCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGa > 1:6008778/1‑93 (MQ=255)
tCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGa > 1:593017/1‑93 (MQ=255)
tCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGa > 1:103088/1‑93 (MQ=255)
gCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGt > 2:2696473/1‑93 (MQ=255)
gCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGt > 2:2868539/1‑93 (MQ=255)
gCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGt > 2:1599719/1‑93 (MQ=255)
gCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGt > 2:9144/1‑93 (MQ=255)
gCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGt < 1:277907/93‑1 (MQ=255)
cAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGtt < 1:365194/93‑1 (MQ=255)
cAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGACGCGTTTAAGCGGCGTGCCTGAAGGTGACGtt > 1:6035480/1‑93 (MQ=255)
aaaCCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGACGTGCCTGAAGGTGACGtt < 2:6291175/92‑1 (MQ=255)
aCCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTcc < 1:3828499/93‑1 (MQ=255)
ccGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCg < 1:732936/93‑1 (MQ=255)
cGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCgg < 2:2024451/93‑1 (MQ=255)
cGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCgg < 2:1559818/93‑1 (MQ=255)
cGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCgg < 2:5421624/93‑1 (MQ=255)
tACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCgggg > 1:5796578/1‑93 (MQ=255)
cATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCt > 2:561316/1‑93 (MQ=255)
aTTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTg < 1:3193053/93‑1 (MQ=255)
ttGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTgg < 1:891274/93‑1 (MQ=255)
ttGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTgg > 2:2545697/1‑93 (MQ=255)
tGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGt < 2:5202108/93‑1 (MQ=255)
gCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTg > 2:5667378/1‑93 (MQ=255)
tAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGaa > 2:1408098/1‑93 (MQ=255)
aaCCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAg < 1:3776836/93‑1 (MQ=255)
aCCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAgg < 1:700415/93‑1 (MQ=255)
aCCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAgg > 2:5082818/1‑93 (MQ=255)
ccAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAgggg < 2:4457031/93‑1 (MQ=255)
ccAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAgggg > 1:4185877/1‑93 (MQ=255)
ccAGACGTGTGGATGAAACAGCCTGAAAACAGCAGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAgggg < 2:6128681/93‑1 (MQ=255)
cAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGa < 2:5759955/93‑1 (MQ=255)
aGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGaa > 2:821652/1‑93 (MQ=255)
aGACGTGGGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGaa > 1:3266266/1‑93 (MQ=255)
gACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAAt > 1:298585/1‑93 (MQ=255)
gACGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAAt < 1:5833259/93‑1 (MQ=255)
aCGTGTGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATa > 1:1141436/1‑93 (MQ=255)
gtgtGGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATAcc > 2:595699/1‑93 (MQ=255)
tgtgGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCt > 1:2281142/1‑93 (MQ=255)
gtgGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTa < 2:2562553/93‑1 (MQ=255)
tgGCTGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTAt > 2:6035922/1‑93 (MQ=255)
ggCTGAAGCAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATc < 2:184634/93‑1 (MQ=255)
tGAAACAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGGATACCTATCTGa > 2:3440246/1‑93 (MQ=255)
gAAACAGTCGGAAAACATCGGCAA‑GCTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGGTGGTGAAGGGGAATACCTATCTGAc < 2:385284/93‑1 (MQ=255)
aaCAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGAcgc < 1:5176505/93‑1 (MQ=255)
aaCAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGAcgc > 2:1367437/1‑93 (MQ=255)
aCAGCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGAcgcc > 1:5031660/1‑93 (MQ=255)
gCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCgca > 1:514796/1‑93 (MQ=255)
gCCGGAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCgca < 2:4496297/93‑1 (MQ=255)
gAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGcaa > 2:1286469/1‑93 (MQ=255)
gAAAACATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGcaa > 2:3696964/1‑93 (MQ=255)
aaaaCATCAGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGcaac < 2:1940769/93‑1 (MQ=255)
aCATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACaaa > 1:3068564/1‑93 (MQ=255)
aCATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACaaa > 2:641439/1‑93 (MQ=255)
aCATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACaaa > 2:313271/1‑93 (MQ=255)
cATCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAAc > 2:424448/1‑93 (MQ=255)
aTCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACg < 1:4404647/93‑1 (MQ=255)
aTCGGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACg > 2:1677381/1‑93 (MQ=255)
aTCAGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACg < 2:4154086/93‑1 (MQ=255)
|
GTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAA‑ACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACG > NC_000913/385113‑385292
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACGGCA > NC_000913/385111‑385295
|
AGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGG < SRR4302537.4309297/94‑1 (MQ=60)
AGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGG < SRR4302537.4639764/94‑1 (MQ=60)
GGTCGTGAAAGCGTTCGCTGAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGC < SRR4302537.699985/94‑1 (MQ=60)
GTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCA > SRR4302537.4301724/1‑94 (MQ=60)
GTCGTGAAAGCGTTCGCTAAAAGCGCAATCGATGCTCAGAAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCA < SRR4302537.2924522/94‑1 (MQ=60)
CGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAA > SRR4302537.358990/1‑94 (MQ=60)
CGTGAAAGCGCTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAA < SRR4302537.4556767/94‑1 (MQ=60)
GTGACAGCGTACGCTAAAAGCGCCATCGATGCTCAGCAACCTTACATTGCTATCCCAGACGTGTGCCTGAAACATCCGGAAAACATCGGCAAAC < SRR4302537.228236/94‑1 (MQ=60)
TGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACTGCCGCAAAACATCGGCAAACT > SRR4302537.483491/1‑94 (MQ=60)
TGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACT > SRR4302537.4419456/1‑94 (MQ=60)
TGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACT < SRR4302537.2344146/94‑1 (MQ=60)
TGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACT > SRR4302537.4767060/1‑94 (MQ=60)
AAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGG > SRR4302537.4533057/1‑94 (MQ=60)
AAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGC < SRR4302537.1237681/94‑1 (MQ=60)
AGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCG > SRR4302537.3001831/1‑94 (MQ=60)
AGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAAACTGGCG > SRR4302537.6299638/1‑94 (MQ=60)
GCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGC > SRR4302537.4576862/1‑94 (MQ=60)
GCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGC < SRR4302537.6358852/94‑1 (MQ=60)
GCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGC < SRR4302537.6102306/94‑1 (MQ=60)
CGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCG > SRR4302537.5837631/1‑94 (MQ=60)
TTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTT < SRR4302537.5016796/94‑1 (MQ=60)
TTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTT < SRR4302537.6102809/94‑1 (MQ=60)
TTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAAACTGGCGCGTT > SRR4302537.6143234/1‑94 (MQ=60)
CGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTA < SRR4302537.2571739/94‑1 (MQ=60)
GCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAA > SRR4302537.2680650/1‑94 (MQ=60)
GCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAA < SRR4302537.5066174/94‑1 (MQ=60)
CTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAG > SRR4302537.659572/1‑94 (MQ=60)
CTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAG > SRR4302537.6435902/1‑94 (MQ=60)
AAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCG < SRR4302537.5800099/94‑1 (MQ=60)
AAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCG < SRR4302537.2877989/94‑1 (MQ=60)
AAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCG > SRR4302537.4587731/1‑94 (MQ=60)
AAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCG < SRR4302537.6219723/94‑1 (MQ=60)
AAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGG < SRR4302537.5531110/94‑1 (MQ=60)
AAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGG < SRR4302537.4963889/94‑1 (MQ=60)
AGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCG > SRR4302537.4736046/1‑94 (MQ=60)
CGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTG > SRR4302537.4219025/1‑94 (MQ=60)
CGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTG < SRR4302537.2047168/94‑1 (MQ=60)
GCCATCGATGCTCAGCAGCCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGC < SRR4302537.2433421/94‑1 (MQ=60)
CCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCC > SRR4302537.6050712/1‑94 (MQ=60)
CATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCT > SRR4302537.5809693/1‑94 (MQ=60)
CATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCT > SRR4302537.790598/1‑94 (MQ=60)
ATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTG < SRR4302537.3145606/94‑1 (MQ=60)
ATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTG > SRR4302537.4480421/1‑94 (MQ=60)
ATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTG > SRR4302537.613062/1‑94 (MQ=60)
TCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGA < SRR4302537.6350611/94‑1 (MQ=60)
CGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAA > SRR4302537.1050932/1‑94 (MQ=60)
GATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAG > SRR4302537.4026893/1‑94 (MQ=60)
GATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAG < SRR4302537.2530946/94‑1 (MQ=60)
GATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAG < SRR4302537.3022835/94‑1 (MQ=60)
AATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAG < SRR4302537.4529986/94‑1 (MQ=60)
TGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGT < SRR4302537.6282308/94‑1 (MQ=60)
TGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGT > SRR4302537.3810062/1‑94 (MQ=60)
TGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGT > SRR4302537.1805338/1‑94 (MQ=60)
GCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTG < SRR4302537.1586983/94‑1 (MQ=60)
CTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGA > SRR4302537.597073/1‑94 (MQ=60)
CTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGA > SRR4302537.6050063/1‑94 (MQ=60)
CTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGA > SRR4302537.103831/1‑94 (MQ=60)
CTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGA > SRR4302537.6384673/1‑94 (MQ=60)
TCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGAG > SRR4302537.5046409/1‑94 (MQ=60)
CAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACG > SRR4302537.382076/1‑94 (MQ=60)
AGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGT > SRR4302537.4664979/1‑94 (MQ=60)
GCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTT < SRR4302537.279848/94‑1 (MQ=60)
GCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTT > SRR4302537.4580/1‑94 (MQ=60)
GCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGACGCGTTTAAGCGGCGTGCCTGAAGGTGACGTT > SRR4302537.6076952/1‑94 (MQ=60)
CAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTC > SRR4302537.723011/1‑94 (MQ=60)
CAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTC < SRR4302537.3514982/94‑1 (MQ=60)
CAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTC < SRR4302537.367730/94‑1 (MQ=60)
CAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTC > SRR4302537.1535131/1‑94 (MQ=60)
AACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCC > SRR4302537.515288/1‑94 (MQ=60)
AACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCC < SRR4302537.3681157/94‑1 (MQ=60)
ACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGGAGGTGACGTTCCG > SRR4302537.2025732/1‑94 (MQ=60)
ACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCG < SRR4302537.3855340/94‑1 (MQ=60)
CCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGG < SRR4302537.737938/94‑1 (MQ=60)
CGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGG > SRR4302537.3644706/1‑94 (MQ=60)
CGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGG < SRR4302537.4022438/94‑1 (MQ=60)
CGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGG > SRR4302537.2788023/1‑94 (MQ=60)
GTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGG > SRR4302537.5836319/1‑94 (MQ=60)
ACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCT > SRR4302537.4873309/1‑94 (MQ=60)
ATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGG < SRR4302537.3215504/94‑1 (MQ=60)
TTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGT < SRR4302537.897413/94‑1 (MQ=60)
TTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGT < SRR4302537.4177232/94‑1 (MQ=60)
GCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGA < SRR4302537.536882/94‑1 (MQ=60)
AACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGG < SRR4302537.3803353/94‑1 (MQ=60)
ACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGG < SRR4302537.705206/94‑1 (MQ=60)
CCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGG > SRR4302537.4215105/1‑94 (MQ=60)
CCCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGG > SRR4302537.2994003/1‑94 (MQ=60)
CCAGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGCTCCGGGGCTGGTGAAGGGGA > SRR4302537.5913932/1‑94 (MQ=60)
CAGACGTGGGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAA > SRR4302537.3289305/1‑94 (MQ=60)
AGACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAAT > SRR4302537.300669/1‑94 (MQ=60)
TACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATA > SRR4302537.1149366/1‑94 (MQ=60)
GACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATA < SRR4302537.5873239/94‑1 (MQ=60)
GACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATA > SRR4302537.5896873/1‑94 (MQ=60)
ACGTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATAC > SRR4302537.2529374/1‑94 (MQ=60)
GTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCT < SRR4302537.1202122/94‑1 (MQ=60)
GTGTGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCT > SRR4302537.2297241/1‑94 (MQ=60)
TGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATC < SRR4302537.5680254/94‑1 (MQ=60)
TGGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATC < SRR4302537.3277806/94‑1 (MQ=60)
GGCTGAAACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCT > SRR4302537.4303241/1‑94 (MQ=60)
AACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCC < SRR4302537.5212131/94‑1 (MQ=60)
AACAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCC > SRR4302537.5066303/1‑94 (MQ=60)
CAGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGC > SRR4302537.5585156/1‑94 (MQ=60)
AGCCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCA > SRR4302537.518337/1‑94 (MQ=60)
CCGGAAAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGC > SRR4302537.3384218/1‑94 (MQ=60)
CGGAAAGCATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCA < SRR4302537.6340401/94‑1 (MQ=60)
AAACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAA > SRR4302537.5202490/1‑94 (MQ=60)
AACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAA < SRR4302537.2655852/94‑1 (MQ=60)
AACATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAA > SRR4302537.3089946/1‑94 (MQ=60)
CATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACG < SRR4302537.6038309/94‑1 (MQ=60)
ATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACGG > SRR4302537.2098400/1‑94 (MQ=60)
ATCGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACGG < SRR4302537.4435038/94‑1 (MQ=60)
CGGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACGGCA < SRR4302537.282886/94‑1 (MQ=60)
|
AGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAACAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTATCTGACGCCGCAGCAACAAACGGCA > NC_000913/385111‑385295
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
